Wall clock time and date at job start Tue Mar 31 2020 13:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47104 * 2 1 4 4 C 1.42909 * 114.00009 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46907 * 29.99449 * 4 3 2 6 6 C 1.53000 * 109.46786 * 270.00072 * 4 3 2 7 7 C 1.52996 * 109.47079 * 299.99816 * 6 4 3 8 8 C 1.53001 * 109.47198 * 300.00193 * 7 6 4 9 9 C 1.53000 * 109.47263 * 59.99920 * 8 7 6 10 10 H 1.09003 * 109.46981 * 59.99972 * 9 8 7 11 11 N 1.46900 * 109.47509 * 179.97438 * 9 8 7 12 12 C 1.46894 * 110.99906 * 275.00319 * 11 9 8 13 13 C 1.50700 * 109.47254 * 179.97438 * 12 11 9 14 14 C 1.38333 * 119.96453 * 89.99707 * 13 12 11 15 15 C 1.38274 * 120.13746 * 180.02562 * 14 13 12 16 16 C 1.38129 * 120.07011 * 359.97438 * 15 14 13 17 17 C 1.38854 * 119.93159 * 0.02562 * 16 15 14 18 18 O 1.35747 * 120.07185 * 180.02562 * 17 16 15 19 19 C 1.34833 * 116.99666 * 354.46672 * 18 17 16 20 20 H 1.08000 * 120.00088 * 5.04878 * 19 18 17 21 21 C 1.38654 * 120.00108 * 185.05776 * 19 18 17 22 22 N 1.31551 * 120.00609 * 179.97438 * 21 19 18 23 23 Si 1.86810 * 119.99694 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47284 * 90.00063 * 23 21 19 25 25 H 1.48495 * 109.46818 * 210.00139 * 23 21 19 26 26 H 1.48498 * 109.47013 * 329.99658 * 23 21 19 27 27 C 1.38075 * 119.96880 * 269.73013 * 13 12 11 28 28 C 1.52991 * 109.47237 * 150.00029 * 4 3 2 29 29 H 1.08992 * 109.46930 * 60.00088 * 1 2 3 30 30 H 1.08996 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46816 * 299.99969 * 1 2 3 32 32 H 1.09004 * 109.47296 * 239.99871 * 2 1 3 33 33 H 1.09004 * 109.47071 * 120.00251 * 2 1 3 34 34 H 1.09003 * 109.46981 * 179.97438 * 6 4 3 35 35 H 1.09002 * 109.47182 * 60.00113 * 6 4 3 36 36 H 1.09008 * 109.47098 * 180.02562 * 7 6 4 37 37 H 1.09000 * 109.47767 * 60.00062 * 7 6 4 38 38 H 1.09003 * 109.47144 * 299.99992 * 8 7 6 39 39 H 1.08999 * 109.47146 * 180.02562 * 8 7 6 40 40 H 1.00896 * 110.99812 * 151.04709 * 11 9 8 41 41 H 1.08995 * 109.47398 * 299.99475 * 12 11 9 42 42 H 1.09004 * 109.47392 * 59.99786 * 12 11 9 43 43 H 1.08001 * 119.92754 * 0.02720 * 14 13 12 44 44 H 1.07997 * 119.96675 * 179.97438 * 15 14 13 45 45 H 1.07999 * 120.03535 * 180.02562 * 16 15 14 46 46 H 0.96993 * 120.00745 * 179.97438 * 22 21 19 47 47 H 1.08004 * 120.03017 * 359.97438 * 27 13 12 48 48 H 1.09008 * 109.47013 * 299.99879 * 28 4 3 49 49 H 1.09003 * 109.47137 * 179.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8632 0.6016 -0.5147 6 6 3.9399 1.5001 1.4417 7 6 3.3332 2.7051 2.1634 8 6 3.7426 3.9908 1.4421 9 6 3.2337 3.9508 -0.0002 10 1 2.1471 3.8647 0.0002 11 7 3.6263 5.1855 -0.6925 12 6 2.6545 6.2590 -0.4460 13 6 3.0900 7.5069 -1.1699 14 6 2.6668 7.7367 -2.4667 15 6 3.0646 8.8802 -3.1345 16 6 3.8859 9.7972 -2.5080 17 6 4.3125 9.5695 -1.2064 18 8 5.1193 10.4690 -0.5878 19 6 5.5632 11.5042 -1.3289 20 1 5.2099 11.6344 -2.3411 21 6 6.4734 12.4016 -0.7916 22 7 6.9070 13.4113 -1.5148 23 14 7.0842 12.1766 0.9595 24 1 8.3021 11.3271 0.9536 25 1 7.4082 13.5024 1.5447 26 1 6.0277 11.5218 1.7719 27 6 3.9066 8.4225 -0.5363 28 6 3.8404 2.7457 -0.7218 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.0266 1.5857 1.4413 35 1 3.6482 0.5841 1.9555 36 1 3.6961 2.7338 3.1908 37 1 2.2465 2.6191 2.1638 38 1 4.8293 4.0769 1.4417 39 1 3.3107 4.8493 1.9565 40 1 3.7434 5.0238 -1.6815 41 1 1.6737 5.9517 -0.8088 42 1 2.5993 6.4606 0.6239 43 1 2.0242 7.0214 -2.9585 44 1 2.7329 9.0566 -4.1470 45 1 4.1960 10.6904 -3.0300 46 1 7.5435 14.0393 -1.1388 47 1 4.2328 8.2448 0.4778 48 1 3.4778 2.7172 -1.7494 49 1 4.9270 2.8320 -0.7218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333611671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:53 Heat of formation + Delta-G solvation = -66.627607 kcal Electronic energy + Delta-G solvation = -26469.782940 eV Core-core repulsion = 22782.662552 eV Total energy + Delta-G solvation = -3687.120388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.83661 -39.14629 -37.43897 -36.54800 -34.45213 -32.34762 -31.73606 -31.19623 -29.77916 -29.36929 -28.24355 -25.36836 -24.48506 -23.21610 -22.76423 -21.74281 -21.60302 -20.41874 -19.79749 -17.70329 -17.15853 -16.61197 -16.24726 -15.90722 -15.43894 -15.09418 -14.99192 -14.75410 -14.33675 -14.10585 -13.91496 -13.66946 -13.48614 -13.24703 -13.01440 -12.77526 -12.65604 -12.36893 -12.31901 -12.13101 -12.04260 -11.90476 -11.76749 -11.49688 -11.28853 -11.27508 -10.92096 -10.81065 -10.73558 -10.63262 -10.52503 -10.20668 -10.09883 -9.71248 -9.34483 -8.83911 -8.34355 -8.08907 -7.32965 -6.37506 -4.04140 2.08510 2.30969 3.25422 3.29368 3.36759 3.44350 4.10541 4.27810 4.43454 4.53170 4.61293 4.69376 4.81582 4.82848 4.90073 4.98261 5.00825 5.03426 5.14100 5.23699 5.25520 5.30778 5.34421 5.40159 5.47838 5.49973 5.54611 5.67059 5.69410 5.75065 5.80804 5.83929 5.87347 5.94353 5.98199 6.06479 6.14717 6.17693 6.31722 6.35449 6.59581 6.84152 6.96120 7.13271 7.17706 7.26301 7.35371 7.51629 7.65054 7.84821 8.08331 8.98120 9.61463 10.70246 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.002403 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.984391 B =11649.224379 C =12592.962817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.377 6.377 4 C 0.094 3.906 5 H 0.059 0.941 6 C -0.140 4.140 7 C -0.113 4.113 8 C -0.108 4.108 9 C 0.093 3.907 10 H 0.051 0.949 11 N -0.681 5.681 12 C 0.108 3.892 13 C -0.048 4.048 14 C -0.199 4.199 15 C -0.077 4.077 16 C -0.220 4.220 17 C 0.157 3.843 18 O -0.219 6.219 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.259 1.259 27 C -0.166 4.166 28 C -0.117 4.117 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.342 0.658 41 H 0.034 0.966 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.132 0.868 46 H 0.279 0.721 47 H 0.116 0.884 48 H 0.066 0.934 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 -26.636 3.545 28.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.297 6.297 4 C 0.036 3.964 5 H 0.077 0.923 6 C -0.178 4.178 7 C -0.151 4.151 8 C -0.146 4.146 9 C -0.016 4.016 10 H 0.069 0.931 11 N -0.312 5.312 12 C -0.021 4.021 13 C -0.049 4.049 14 C -0.218 4.218 15 C -0.096 4.096 16 C -0.239 4.239 17 C 0.106 3.894 18 O -0.124 6.124 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.183 1.183 27 C -0.186 4.186 28 C -0.154 4.154 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.160 0.840 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.149 0.851 46 H 0.089 0.911 47 H 0.134 0.866 48 H 0.085 0.915 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.000 -26.051 4.274 27.891 hybrid contribution -0.178 -0.389 -0.081 0.436 sum -9.178 -26.440 4.193 28.300 Atomic orbital electron populations 1.21735 0.93865 1.02075 1.03178 1.22473 0.95538 0.84292 0.99724 1.87960 1.20904 1.25793 1.95017 1.22048 0.81257 0.97663 0.95480 0.92267 1.22026 1.00866 0.98925 0.95984 1.21416 1.01202 0.94082 0.98394 1.21533 1.01638 0.96884 0.94528 1.21405 0.98005 0.88074 0.94153 0.93084 1.60513 1.48684 1.06028 1.15977 1.20819 0.92332 0.88979 0.99935 1.19183 0.97196 0.94487 0.94035 1.20495 1.06485 0.99537 0.95313 1.20741 0.96504 0.93794 0.98528 1.21294 1.04031 1.02373 0.96240 1.19099 0.90447 0.88889 0.91002 1.83576 1.57225 1.32810 1.38774 1.20757 1.25095 1.01666 0.98851 0.87696 1.24460 0.95363 0.94541 0.99686 1.69642 1.31170 1.13904 1.37234 0.86182 0.79859 0.77527 0.83346 1.19891 1.20866 1.18347 1.20017 1.03912 0.93829 1.00831 1.21815 1.01596 0.93142 0.98886 0.91880 0.91310 0.91858 0.93660 0.93633 0.90941 0.92177 0.92174 0.91518 0.91367 0.91970 0.83971 0.94817 0.90607 0.87891 0.87324 0.85078 0.91120 0.86555 0.91509 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.40 6.47 37.16 0.24 0.64 16 3 O -0.38 -3.54 8.64 -35.23 -0.30 -3.84 16 4 C 0.09 0.78 2.92 -26.74 -0.08 0.70 16 5 H 0.06 0.42 7.79 -51.93 -0.40 0.02 16 6 C -0.14 -1.11 5.63 -26.73 -0.15 -1.26 16 7 C -0.11 -1.02 5.78 -26.73 -0.15 -1.18 16 8 C -0.11 -1.15 5.43 -26.73 -0.15 -1.30 16 9 C 0.09 1.02 2.35 -67.71 -0.16 0.86 16 10 H 0.05 0.62 7.34 -51.93 -0.38 0.24 16 11 N -0.68 -8.78 6.30 -108.00 -0.68 -9.46 16 12 C 0.11 1.51 5.61 -4.98 -0.03 1.48 16 13 C -0.05 -0.84 5.39 -104.65 -0.56 -1.40 16 14 C -0.20 -3.36 9.70 -39.53 -0.38 -3.75 16 15 C -0.08 -1.43 10.04 -39.61 -0.40 -1.82 16 16 C -0.22 -4.84 9.17 -39.39 -0.36 -5.20 16 17 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 18 O -0.22 -5.89 8.59 0.05 0.00 -5.89 16 19 C -0.39 -11.11 9.95 30.89 0.31 -10.80 16 20 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 21 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 22 N -0.88 -25.75 13.96 55.48 0.77 -24.98 16 23 Si 0.91 22.06 28.62 -169.99 -4.86 17.19 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 27 C -0.17 -3.40 9.64 -39.39 -0.38 -3.78 16 28 C -0.12 -1.08 4.94 -26.74 -0.13 -1.21 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 33 H 0.05 0.29 7.87 -51.93 -0.41 -0.12 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 36 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.07 0.65 7.68 -51.93 -0.40 0.26 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 40 H 0.34 4.26 8.34 -39.29 -0.33 3.94 16 41 H 0.03 0.44 8.00 -51.93 -0.42 0.03 16 42 H 0.08 1.06 7.38 -51.93 -0.38 0.68 16 43 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 45 H 0.13 3.03 5.64 -52.49 -0.30 2.73 16 46 H 0.28 7.52 8.31 -40.82 -0.34 7.19 16 47 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 48 H 0.07 0.61 8.12 -51.92 -0.42 0.19 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 389.31 15.07 5.87 5.87 Total: -1.00 -29.88 389.31 -9.87 -39.74 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.30 Total: 4.80 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -2.36 Total: -23.43 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.09 Total: -34.44 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.30 Total: -9.73 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.88 -9.87 -39.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333611671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.883 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds