Wall clock time and date at job start Tue Mar 31 2020 13:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47104 * 2 1 4 4 C 1.42909 * 114.00009 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46907 * 29.99449 * 4 3 2 6 6 C 1.53000 * 109.46786 * 270.00072 * 4 3 2 7 7 C 1.52996 * 109.47079 * 299.99816 * 6 4 3 8 8 C 1.53001 * 109.47198 * 300.00193 * 7 6 4 9 9 C 1.53000 * 109.47263 * 59.99920 * 8 7 6 10 10 H 1.09003 * 109.46981 * 59.99972 * 9 8 7 11 11 N 1.46900 * 109.47509 * 179.97438 * 9 8 7 12 12 C 1.46894 * 110.99906 * 275.00319 * 11 9 8 13 13 C 1.50700 * 109.47254 * 179.97438 * 12 11 9 14 14 C 1.38333 * 119.96453 * 89.99707 * 13 12 11 15 15 C 1.38274 * 120.13746 * 180.02562 * 14 13 12 16 16 C 1.38129 * 120.07011 * 359.97438 * 15 14 13 17 17 C 1.38854 * 119.93159 * 0.02562 * 16 15 14 18 18 O 1.35747 * 120.07185 * 180.02562 * 17 16 15 19 19 C 1.34833 * 116.99666 * 354.46672 * 18 17 16 20 20 H 1.08000 * 120.00088 * 5.04878 * 19 18 17 21 21 C 1.38654 * 120.00108 * 185.05776 * 19 18 17 22 22 N 1.31551 * 120.00609 * 179.97438 * 21 19 18 23 23 Si 1.86810 * 119.99694 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47284 * 90.00063 * 23 21 19 25 25 H 1.48495 * 109.46818 * 210.00139 * 23 21 19 26 26 H 1.48498 * 109.47013 * 329.99658 * 23 21 19 27 27 C 1.38075 * 119.96880 * 269.73013 * 13 12 11 28 28 C 1.52991 * 109.47237 * 150.00029 * 4 3 2 29 29 H 1.08992 * 109.46930 * 60.00088 * 1 2 3 30 30 H 1.08996 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46816 * 299.99969 * 1 2 3 32 32 H 1.09004 * 109.47296 * 239.99871 * 2 1 3 33 33 H 1.09004 * 109.47071 * 120.00251 * 2 1 3 34 34 H 1.09003 * 109.46981 * 179.97438 * 6 4 3 35 35 H 1.09002 * 109.47182 * 60.00113 * 6 4 3 36 36 H 1.09008 * 109.47098 * 180.02562 * 7 6 4 37 37 H 1.09000 * 109.47767 * 60.00062 * 7 6 4 38 38 H 1.09003 * 109.47144 * 299.99992 * 8 7 6 39 39 H 1.08999 * 109.47146 * 180.02562 * 8 7 6 40 40 H 1.00896 * 110.99812 * 151.04709 * 11 9 8 41 41 H 1.08995 * 109.47398 * 299.99475 * 12 11 9 42 42 H 1.09004 * 109.47392 * 59.99786 * 12 11 9 43 43 H 1.08001 * 119.92754 * 0.02720 * 14 13 12 44 44 H 1.07997 * 119.96675 * 179.97438 * 15 14 13 45 45 H 1.07999 * 120.03535 * 180.02562 * 16 15 14 46 46 H 0.96993 * 120.00745 * 179.97438 * 22 21 19 47 47 H 1.08004 * 120.03017 * 359.97438 * 27 13 12 48 48 H 1.09008 * 109.47013 * 299.99879 * 28 4 3 49 49 H 1.09003 * 109.47137 * 179.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8632 0.6016 -0.5147 6 6 3.9399 1.5001 1.4417 7 6 3.3332 2.7051 2.1634 8 6 3.7426 3.9908 1.4421 9 6 3.2337 3.9508 -0.0002 10 1 2.1471 3.8647 0.0002 11 7 3.6263 5.1855 -0.6925 12 6 2.6545 6.2590 -0.4460 13 6 3.0900 7.5069 -1.1699 14 6 2.6668 7.7367 -2.4667 15 6 3.0646 8.8802 -3.1345 16 6 3.8859 9.7972 -2.5080 17 6 4.3125 9.5695 -1.2064 18 8 5.1193 10.4690 -0.5878 19 6 5.5632 11.5042 -1.3289 20 1 5.2099 11.6344 -2.3411 21 6 6.4734 12.4016 -0.7916 22 7 6.9070 13.4113 -1.5148 23 14 7.0842 12.1766 0.9595 24 1 8.3021 11.3271 0.9536 25 1 7.4082 13.5024 1.5447 26 1 6.0277 11.5218 1.7719 27 6 3.9066 8.4225 -0.5363 28 6 3.8404 2.7457 -0.7218 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.0266 1.5857 1.4413 35 1 3.6482 0.5841 1.9555 36 1 3.6961 2.7338 3.1908 37 1 2.2465 2.6191 2.1638 38 1 4.8293 4.0769 1.4417 39 1 3.3107 4.8493 1.9565 40 1 3.7434 5.0238 -1.6815 41 1 1.6737 5.9517 -0.8088 42 1 2.5993 6.4606 0.6239 43 1 2.0242 7.0214 -2.9585 44 1 2.7329 9.0566 -4.1470 45 1 4.1960 10.6904 -3.0300 46 1 7.5435 14.0393 -1.1388 47 1 4.2328 8.2448 0.4778 48 1 3.4778 2.7172 -1.7494 49 1 4.9270 2.8320 -0.7218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333611671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:52 Heat of formation + Delta-G solvation = -83.891854 kcal Electronic energy + Delta-G solvation = -26470.531574 eV Core-core repulsion = 22782.662552 eV Total energy + Delta-G solvation = -3687.869022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94744 -40.46681 -38.76050 -37.68864 -35.45568 -34.44137 -32.43792 -32.31675 -31.05001 -30.42940 -29.32299 -27.28984 -25.82097 -23.76078 -23.55709 -23.19380 -22.53106 -21.98827 -20.55996 -19.65558 -18.86422 -17.39160 -16.92705 -16.87386 -16.70743 -16.52616 -16.19712 -15.85301 -15.67388 -15.62901 -15.10953 -14.83129 -14.78999 -14.47195 -14.15450 -14.06245 -13.79986 -13.56830 -13.39991 -13.22512 -13.02645 -12.91634 -12.67198 -12.53599 -12.45104 -12.41011 -12.26600 -12.12590 -12.03338 -11.89952 -11.57409 -11.34068 -11.25087 -10.98376 -10.89713 -10.32019 -9.70151 -9.31977 -9.05023 -8.49511 -6.21967 0.50415 0.69656 1.30785 1.35271 1.51788 2.28399 2.73598 2.80636 2.97077 3.15069 3.37614 3.74319 3.88205 3.97810 4.06840 4.13097 4.20359 4.26724 4.28560 4.32656 4.37657 4.43835 4.52808 4.54754 4.56872 4.58427 4.65080 4.67364 4.71698 4.74701 4.79883 5.00342 5.02954 5.07312 5.09042 5.16249 5.22729 5.25378 5.31015 5.33244 5.34485 5.40511 5.53656 5.68074 5.74323 5.79298 5.92100 6.14166 6.26902 6.39025 6.53135 6.85023 7.60450 8.62096 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.002403 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.984391 B =11649.224379 C =12592.962817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.396 6.396 4 C 0.094 3.906 5 H 0.075 0.925 6 C -0.138 4.138 7 C -0.108 4.108 8 C -0.107 4.107 9 C 0.099 3.901 10 H 0.044 0.956 11 N -0.690 5.690 12 C 0.114 3.886 13 C -0.038 4.038 14 C -0.174 4.174 15 C -0.075 4.075 16 C -0.239 4.239 17 C 0.119 3.881 18 O -0.247 6.247 19 C -0.398 4.398 20 H 0.081 0.919 21 C 0.009 3.991 22 N -0.923 5.923 23 Si 0.970 3.030 24 H -0.266 1.266 25 H -0.266 1.266 26 H -0.265 1.265 27 C -0.171 4.171 28 C -0.114 4.114 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.346 0.654 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.108 0.892 46 H 0.284 0.716 47 H 0.117 0.883 48 H 0.069 0.931 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.734 -30.117 3.874 32.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.317 6.317 4 C 0.036 3.964 5 H 0.093 0.907 6 C -0.176 4.176 7 C -0.146 4.146 8 C -0.145 4.145 9 C -0.010 4.010 10 H 0.062 0.938 11 N -0.321 5.321 12 C -0.014 4.014 13 C -0.039 4.039 14 C -0.193 4.193 15 C -0.093 4.093 16 C -0.258 4.258 17 C 0.070 3.930 18 O -0.155 6.155 19 C -0.474 4.474 20 H 0.099 0.901 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.792 3.208 24 H -0.191 1.191 25 H -0.191 1.191 26 H -0.189 1.189 27 C -0.191 4.191 28 C -0.152 4.152 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.165 0.835 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.164 0.836 44 H 0.159 0.841 45 H 0.125 0.875 46 H 0.094 0.906 47 H 0.135 0.865 48 H 0.088 0.912 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.234 -29.570 4.588 31.625 hybrid contribution -0.027 0.434 -0.314 0.536 sum -10.261 -29.136 4.274 31.184 Atomic orbital electron populations 1.21749 0.93535 1.03043 1.02399 1.22629 0.95870 0.83481 1.00557 1.87937 1.21353 1.27232 1.95135 1.22072 0.81115 0.97601 0.95645 0.90698 1.22019 1.01097 0.98680 0.95768 1.21361 1.00752 0.93789 0.98715 1.21521 1.00978 0.97394 0.94647 1.21371 0.97592 0.87866 0.94163 0.93843 1.60478 1.48545 1.06634 1.16483 1.20758 0.93335 0.87792 0.99557 1.19584 0.95224 0.94753 0.94307 1.21008 1.04673 0.98932 0.94691 1.21103 0.95048 0.93199 0.99918 1.21327 1.05569 1.02838 0.96080 1.19626 0.91281 0.89796 0.92292 1.83518 1.59403 1.33448 1.39102 1.20706 1.25580 1.02783 0.98357 0.90125 1.25268 0.95601 0.94272 1.03764 1.69721 1.32528 1.15042 1.39090 0.85231 0.79082 0.78131 0.78343 1.19126 1.19051 1.18919 1.20235 1.04393 0.93395 1.01056 1.21793 1.01567 0.92849 0.98947 0.92627 0.89523 0.92609 0.92765 0.92791 0.90379 0.91107 0.91606 0.92288 0.92138 0.93239 0.83531 0.92797 0.90719 0.83621 0.84106 0.87455 0.90594 0.86457 0.91213 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.59 6.47 71.98 0.47 1.06 16 3 O -0.40 -6.50 8.64 -148.98 -1.29 -7.79 16 4 C 0.09 1.31 2.92 30.59 0.09 1.40 16 5 H 0.08 0.83 7.79 -2.39 -0.02 0.81 16 6 C -0.14 -1.83 5.63 30.59 0.17 -1.66 16 7 C -0.11 -1.77 5.78 30.59 0.18 -1.59 16 8 C -0.11 -2.15 5.43 30.59 0.17 -1.98 16 9 C 0.10 1.96 2.35 44.92 0.11 2.06 16 10 H 0.04 0.95 7.34 -2.39 -0.02 0.93 16 11 N -0.69 -16.06 6.30 -495.59 -3.12 -19.18 16 12 C 0.11 2.87 5.61 85.56 0.48 3.35 16 13 C -0.04 -1.22 5.39 -19.88 -0.11 -1.33 16 14 C -0.17 -5.23 9.70 22.30 0.22 -5.02 16 15 C -0.07 -2.60 10.04 22.25 0.22 -2.37 16 16 C -0.24 -10.76 9.17 22.39 0.21 -10.56 16 17 C 0.12 5.78 6.65 22.58 0.15 5.93 16 18 O -0.25 -13.90 8.59 -22.74 -0.20 -14.10 16 19 C -0.40 -24.05 9.95 67.92 0.68 -23.38 16 20 H 0.08 5.09 5.44 -2.91 -0.02 5.07 16 21 C 0.01 0.54 5.49 84.83 0.47 1.01 16 22 N -0.92 -56.05 13.96 21.61 0.30 -55.74 16 23 Si 0.97 46.70 28.62 68.60 1.96 48.66 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 27 C -0.17 -6.95 9.64 22.39 0.22 -6.73 16 28 C -0.11 -1.82 4.94 30.59 0.15 -1.67 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.53 8.08 -2.39 -0.02 0.51 16 33 H 0.05 0.53 7.87 -2.38 -0.02 0.51 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.81 7.87 -2.39 -0.02 0.79 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.06 1.06 7.68 -2.39 -0.02 1.04 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.10 7.45 -2.39 -0.02 1.08 16 40 H 0.35 7.55 8.34 -89.70 -0.75 6.80 16 41 H 0.05 1.18 8.00 -2.39 -0.02 1.16 16 42 H 0.07 1.94 7.38 -2.39 -0.02 1.92 16 43 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 44 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 45 H 0.11 5.30 5.64 -2.91 -0.02 5.29 16 46 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 47 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 48 H 0.07 1.08 8.12 -2.38 -0.02 1.06 16 49 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -67.60 389.31 2.43 -65.17 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.18 Total: 25.29 kcal Atomic # 6 Polarization: -46.90 SS G_CDS: 4.59 Total: -42.31 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -2.82 Total: -74.93 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -1.48 Total: -21.88 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.96 Total: 48.66 kcal Total: -67.60 2.43 -65.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333611671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.719 kcal (2) G-P(sol) polarization free energy of solvation -67.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds