Wall clock time and date at job start Tue Mar 31 2020 13:31:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42897 * 109.47387 * 2 1
4 4 C 1.42896 * 114.00262 * 180.02562 * 3 2 1
5 5 C 1.52998 * 109.47398 * 180.02562 * 4 3 2
6 6 H 1.09002 * 109.46933 * 184.99810 * 5 4 3
7 7 N 1.46494 * 109.47124 * 64.99548 * 5 4 3
8 8 C 1.34784 * 119.99645 * 155.00076 * 7 5 4
9 9 O 1.21282 * 119.99876 * 0.02562 * 8 7 5
10 10 C 1.50699 * 119.99510 * 180.02562 * 8 7 5
11 11 H 1.09005 * 109.47109 * 299.99748 * 10 8 7
12 12 C 1.50700 * 109.47307 * 60.00298 * 10 8 7
13 13 H 1.07999 * 120.00243 * 32.98280 * 12 10 8
14 14 C 1.37883 * 119.99791 * 212.98342 * 12 10 8
15 15 N 1.31508 * 119.99932 * 188.11724 * 14 12 10
16 16 Si 1.86801 * 119.99932 * 8.39636 * 14 12 10
17 17 H 1.48501 * 109.47205 * 275.04074 * 16 14 12
18 18 H 1.48501 * 109.47411 * 35.03817 * 16 14 12
19 19 H 1.48495 * 109.47227 * 155.04350 * 16 14 12
20 20 C 1.50702 * 109.46511 * 180.02562 * 10 8 7
21 21 C 1.38235 * 120.00035 * 293.75967 * 20 10 8
22 22 C 1.38240 * 119.99852 * 179.78916 * 21 20 10
23 23 C 1.38231 * 120.00233 * 0.44959 * 22 21 20
24 24 C 1.38242 * 119.99602 * 359.80948 * 23 22 21
25 25 C 1.38224 * 120.00271 * 359.97438 * 24 23 22
26 26 C 1.53005 * 109.46764 * 304.99571 * 5 4 3
27 27 C 1.52998 * 109.46764 * 180.02562 * 26 5 4
28 28 C 1.53004 * 109.47275 * 299.99964 * 26 5 4
29 29 H 1.09001 * 109.47179 * 180.02562 * 1 2 3
30 30 H 1.09007 * 109.46906 * 300.00280 * 1 2 3
31 31 H 1.08998 * 109.46956 * 60.00043 * 1 2 3
32 32 H 1.09007 * 109.46906 * 239.99720 * 2 1 3
33 33 H 1.08998 * 109.46956 * 119.99957 * 2 1 3
34 34 H 1.09004 * 109.47368 * 59.99500 * 4 3 2
35 35 H 1.09003 * 109.46820 * 300.00169 * 4 3 2
36 36 H 0.96992 * 120.00456 * 335.00085 * 7 5 4
37 37 H 0.96999 * 120.00146 * 180.27494 * 15 14 12
38 38 H 1.07999 * 120.00006 * 0.02562 * 21 20 10
39 39 H 1.08004 * 119.99747 * 180.27961 * 22 21 20
40 40 H 1.07997 * 120.00121 * 179.83516 * 23 22 21
41 41 H 1.08004 * 119.99444 * 179.97438 * 24 23 22
42 42 H 1.08001 * 120.00526 * 179.97438 * 25 24 23
43 43 H 1.08997 * 109.46741 * 60.00390 * 26 5 4
44 44 H 1.08997 * 109.47173 * 60.00655 * 27 26 5
45 45 H 1.09005 * 109.46706 * 180.02562 * 27 26 5
46 46 H 1.09001 * 109.47304 * 299.99855 * 27 26 5
47 47 H 1.09007 * 109.46598 * 60.00085 * 28 26 5
48 48 H 1.08993 * 109.46515 * 179.97438 * 28 26 5
49 49 H 1.08994 * 109.47153 * 300.00518 * 28 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4309 1.4601 -0.0006
5 6 3.8254 2.9383 0.0001
6 1 4.9083 3.0253 -0.0899
7 7 3.3879 3.5599 1.2524
8 6 4.0198 4.6558 1.7174
9 8 4.9503 5.1276 1.0989
10 6 3.5700 5.2949 3.0060
11 1 2.5308 5.6102 2.9118
12 6 3.6931 4.2991 4.1304
13 1 4.4842 3.5641 4.1166
14 6 2.7956 4.3265 5.1768
15 7 2.9935 3.5681 6.2327
16 14 1.2946 5.4352 5.0911
17 1 1.6590 6.7984 5.5537
18 1 0.8077 5.5017 3.6898
19 1 0.2239 4.8868 5.9617
20 6 4.4337 6.4945 3.2998
21 6 5.7750 6.3263 3.5889
22 6 6.5681 7.4270 3.8542
23 6 6.0180 8.6950 3.8395
24 6 4.6755 8.8627 3.5556
25 6 3.8834 7.7625 3.2860
26 6 3.1571 3.6450 -1.1809
27 6 3.5521 5.1231 -1.1806
28 6 3.6140 2.9958 -2.4888
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 3.8333 0.9766 -0.8908
35 1 3.8340 0.9763 0.8892
36 1 2.6435 3.1828 1.7469
37 1 2.3601 3.5844 6.9672
38 1 6.2040 5.3353 3.6038
39 1 7.6171 7.2959 4.0756
40 1 6.6371 9.5547 4.0493
41 1 4.2456 9.8535 3.5445
42 1 2.8344 7.8935 3.0646
43 1 2.0743 3.5579 -1.0909
44 1 4.6349 5.2098 -1.2709
45 1 3.0756 5.6267 -2.0217
46 1 3.2269 5.5860 -0.2488
47 1 3.3329 1.9426 -2.4892
48 1 3.1375 3.4990 -3.3300
49 1 4.6968 3.0828 -2.5788
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001361425906.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:31:26
Heat of formation + Delta-G solvation = -77.239758 kcal
Electronic energy + Delta-G solvation = -28197.463579 eV
Core-core repulsion = 24509.883014 eV
Total energy + Delta-G solvation = -3687.580566 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-39.70710 -38.50747 -37.62029 -35.74918 -33.61396 -32.62920 -31.45224 -31.32689
-30.07386 -28.56958 -27.56692 -26.49422 -23.70924 -22.86848 -22.76765 -21.79264
-21.05174 -19.61603 -19.25198 -17.11670 -16.63530 -16.33034 -16.22536 -15.94918
-15.38526 -14.83427 -14.67177 -14.42260 -14.20358 -13.78739 -13.47285 -13.15198
-12.82625 -12.74600 -12.64281 -12.62614 -12.46315 -12.21589 -12.02547 -11.86612
-11.83524 -11.54590 -11.48799 -11.24579 -11.07241 -11.01156 -10.78864 -10.43268
-10.38371 -10.37255 -10.21578 -9.88521 -9.53589 -9.50175 -8.86396 -8.64553
-8.26559 -8.07157 -7.75596 -6.27998 -4.30845 2.21351 2.27887 3.19431
3.24517 3.28421 3.61365 3.72327 4.02051 4.25276 4.69306 4.88967
5.00589 5.04057 5.05467 5.19951 5.28440 5.33587 5.41126 5.52880
5.55974 5.59771 5.60636 5.65274 5.75813 5.82844 5.86611 5.90715
6.00547 6.06718 6.09187 6.15405 6.18217 6.22807 6.34404 6.35477
6.38049 6.51670 6.63514 6.80187 6.82936 6.90999 7.17259 7.22392
7.27816 7.31780 7.35377 7.65715 7.86040 8.23615 8.41040 8.72546
9.20964 9.31149 10.83234
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.011469 B = 0.004996 C = 0.003920
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2440.789754 B = 5602.645707 C = 7141.479927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.058 3.942
3 O -0.380 6.380
4 C 0.054 3.946
5 C 0.156 3.844
6 H 0.094 0.906
7 N -0.719 5.719
8 C 0.536 3.464
9 O -0.558 6.558
10 C 0.021 3.979
11 H 0.067 0.933
12 C -0.510 4.510
13 H 0.081 0.919
14 C 0.086 3.914
15 N -0.882 5.882
16 Si 0.864 3.136
17 H -0.267 1.267
18 H -0.262 1.262
19 H -0.285 1.285
20 C -0.024 4.024
21 C -0.071 4.071
22 C -0.130 4.130
23 C -0.144 4.144
24 C -0.129 4.129
25 C -0.136 4.136
26 C -0.102 4.102
27 C -0.137 4.137
28 C -0.142 4.142
29 H 0.067 0.933
30 H 0.065 0.935
31 H 0.060 0.940
32 H 0.043 0.957
33 H 0.049 0.951
34 H 0.059 0.941
35 H 0.057 0.943
36 H 0.408 0.592
37 H 0.268 0.732
38 H 0.116 0.884
39 H 0.110 0.890
40 H 0.108 0.892
41 H 0.108 0.892
42 H 0.106 0.894
43 H 0.077 0.923
44 H 0.060 0.940
45 H 0.038 0.962
46 H 0.057 0.943
47 H 0.052 0.948
48 H 0.052 0.948
49 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.900 -2.760 -12.340 12.787
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.019 4.019
3 O -0.300 6.300
4 C -0.023 4.023
5 C 0.051 3.949
6 H 0.111 0.889
7 N -0.371 5.371
8 C 0.326 3.674
9 O -0.437 6.437
10 C 0.000 4.000
11 H 0.085 0.915
12 C -0.547 4.547
13 H 0.099 0.901
14 C -0.118 4.118
15 N -0.518 5.518
16 Si 0.691 3.309
17 H -0.193 1.193
18 H -0.187 1.187
19 H -0.211 1.211
20 C -0.025 4.025
21 C -0.089 4.089
22 C -0.148 4.148
23 C -0.162 4.162
24 C -0.147 4.147
25 C -0.154 4.154
26 C -0.122 4.122
27 C -0.194 4.194
28 C -0.200 4.200
29 H 0.086 0.914
30 H 0.084 0.916
31 H 0.079 0.921
32 H 0.062 0.938
33 H 0.067 0.933
34 H 0.077 0.923
35 H 0.076 0.924
36 H 0.244 0.756
37 H 0.078 0.922
38 H 0.134 0.866
39 H 0.128 0.872
40 H 0.126 0.874
41 H 0.126 0.874
42 H 0.124 0.876
43 H 0.095 0.905
44 H 0.080 0.920
45 H 0.057 0.943
46 H 0.076 0.924
47 H 0.071 0.929
48 H 0.071 0.929
49 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -1.432 -2.344 -12.568 12.864
hybrid contribution -1.043 0.066 0.487 1.153
sum -2.475 -2.278 -12.080 12.540
Atomic orbital electron populations
1.21731 0.93928 1.01943 1.03226 1.22423 0.95507 0.84145 0.99836
1.87911 1.20769 1.25948 1.95357 1.22857 0.81793 0.96939 1.00748
1.20958 0.99539 0.89363 0.85066 0.88850 1.45867 1.37233 1.30316
1.23662 1.21013 0.81508 0.79209 0.85716 1.90593 1.29619 1.63562
1.59892 1.18502 0.96122 0.92864 0.92528 0.91538 1.20514 1.15944
1.15079 1.03203 0.90080 1.24966 0.97590 0.94714 0.94562 1.69875
1.36339 1.39200 1.06340 0.87000 0.83385 0.81983 0.78570 1.19259
1.18745 1.21100 1.20056 0.94358 0.93664 0.94417 1.20824 0.93422
0.98139 0.96488 1.21023 0.99162 0.92987 1.01633 1.20844 0.95205
0.96731 1.03423 1.20866 0.94237 0.97790 1.01832 1.20959 0.99120
0.92680 1.02661 1.21443 1.01067 0.95824 0.93855 1.21860 1.01837
0.94763 1.00976 1.21829 1.01017 1.00207 0.96974 0.91431 0.91576
0.92062 0.93847 0.93321 0.92296 0.92432 0.75631 0.92197 0.86563
0.87227 0.87428 0.87369 0.87554 0.90488 0.92046 0.94299 0.92367
0.92869 0.92926 0.92872
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.46 10.28 37.16 0.38 -1.07 16
2 C 0.06 0.62 6.66 37.16 0.25 0.87 16
3 O -0.38 -5.09 9.19 -35.23 -0.32 -5.41 16
4 C 0.05 0.69 5.17 37.16 0.19 0.88 16
5 C 0.16 2.38 2.24 -67.93 -0.15 2.23 16
6 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16
7 N -0.72 -13.16 4.85 -53.81 -0.26 -13.42 16
8 C 0.54 11.37 5.40 -10.98 -0.06 11.31 16
9 O -0.56 -12.50 12.55 5.56 0.07 -12.43 16
10 C 0.02 0.49 1.97 -94.07 -0.19 0.30 16
11 H 0.07 1.51 4.81 -51.93 -0.25 1.26 16
12 C -0.51 -13.10 8.00 -34.44 -0.28 -13.38 16
13 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16
14 C 0.09 2.30 5.47 -17.82 -0.10 2.20 16
15 N -0.88 -25.06 13.96 55.43 0.77 -24.29 16
16 Si 0.86 20.11 27.32 -169.99 -4.64 15.46 16
17 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16
18 H -0.26 -5.74 6.40 56.52 0.36 -5.38 16
19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
20 C -0.02 -0.54 4.30 -104.62 -0.45 -0.99 16
21 C -0.07 -1.56 8.32 -39.58 -0.33 -1.89 16
22 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16
23 C -0.14 -2.57 10.05 -39.58 -0.40 -2.97 16
24 C -0.13 -2.38 10.05 -39.59 -0.40 -2.78 16
25 C -0.14 -2.82 9.67 -39.59 -0.38 -3.20 16
26 C -0.10 -1.45 2.49 -90.62 -0.23 -1.68 16
27 C -0.14 -2.18 7.71 37.16 0.29 -1.90 16
28 C -0.14 -1.64 8.84 37.16 0.33 -1.31 16
29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16
34 H 0.06 0.63 6.71 -51.93 -0.35 0.28 16
35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.41 7.57 8.27 -40.82 -0.34 7.23 16
37 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16
38 H 0.12 2.65 7.89 -52.49 -0.41 2.24 16
39 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16
40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16
41 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16
42 H 0.11 2.05 7.95 -52.49 -0.42 1.63 16
43 H 0.08 1.15 7.56 -51.93 -0.39 0.76 16
44 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16
45 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16
46 H 0.06 1.07 5.77 -51.93 -0.30 0.77 16
47 H 0.05 0.56 6.55 -51.92 -0.34 0.22 16
48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
49 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
LS Contribution 389.59 15.07 5.87 5.87
Total: -1.00 -29.22 389.59 -8.68 -37.91
By element:
Atomic # 1 Polarization: 20.84 SS G_CDS: -8.26 Total: 12.59 kcal
Atomic # 6 Polarization: -14.36 SS G_CDS: -1.91 Total: -16.27 kcal
Atomic # 7 Polarization: -38.22 SS G_CDS: 0.51 Total: -37.71 kcal
Atomic # 8 Polarization: -17.59 SS G_CDS: -0.25 Total: -17.85 kcal
Atomic # 14 Polarization: 20.11 SS G_CDS: -4.64 Total: 15.46 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -29.22 -8.68 -37.91 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001361425906.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.335 kcal
(2) G-P(sol) polarization free energy of solvation -29.222 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.556 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.240 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds