Wall clock time and date at job start Tue Mar 31 2020 13:31:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42897 * 109.47387 * 2 1
4 4 C 1.42896 * 114.00262 * 180.02562 * 3 2 1
5 5 C 1.52998 * 109.47398 * 180.02562 * 4 3 2
6 6 H 1.09002 * 109.46933 * 184.99810 * 5 4 3
7 7 N 1.46494 * 109.47124 * 64.99548 * 5 4 3
8 8 C 1.34784 * 119.99645 * 155.00076 * 7 5 4
9 9 O 1.21282 * 119.99876 * 0.02562 * 8 7 5
10 10 C 1.50699 * 119.99510 * 180.02562 * 8 7 5
11 11 H 1.09005 * 109.47109 * 299.99748 * 10 8 7
12 12 C 1.50700 * 109.47307 * 60.00298 * 10 8 7
13 13 H 1.07999 * 120.00243 * 32.98280 * 12 10 8
14 14 C 1.37883 * 119.99791 * 212.98342 * 12 10 8
15 15 N 1.31508 * 119.99932 * 188.11724 * 14 12 10
16 16 Si 1.86801 * 119.99932 * 8.39636 * 14 12 10
17 17 H 1.48501 * 109.47205 * 275.04074 * 16 14 12
18 18 H 1.48501 * 109.47411 * 35.03817 * 16 14 12
19 19 H 1.48495 * 109.47227 * 155.04350 * 16 14 12
20 20 C 1.50702 * 109.46511 * 180.02562 * 10 8 7
21 21 C 1.38235 * 120.00035 * 293.75967 * 20 10 8
22 22 C 1.38240 * 119.99852 * 179.78916 * 21 20 10
23 23 C 1.38231 * 120.00233 * 0.44959 * 22 21 20
24 24 C 1.38242 * 119.99602 * 359.80948 * 23 22 21
25 25 C 1.38224 * 120.00271 * 359.97438 * 24 23 22
26 26 C 1.53005 * 109.46764 * 304.99571 * 5 4 3
27 27 C 1.52998 * 109.46764 * 180.02562 * 26 5 4
28 28 C 1.53004 * 109.47275 * 299.99964 * 26 5 4
29 29 H 1.09001 * 109.47179 * 180.02562 * 1 2 3
30 30 H 1.09007 * 109.46906 * 300.00280 * 1 2 3
31 31 H 1.08998 * 109.46956 * 60.00043 * 1 2 3
32 32 H 1.09007 * 109.46906 * 239.99720 * 2 1 3
33 33 H 1.08998 * 109.46956 * 119.99957 * 2 1 3
34 34 H 1.09004 * 109.47368 * 59.99500 * 4 3 2
35 35 H 1.09003 * 109.46820 * 300.00169 * 4 3 2
36 36 H 0.96992 * 120.00456 * 335.00085 * 7 5 4
37 37 H 0.96999 * 120.00146 * 180.27494 * 15 14 12
38 38 H 1.07999 * 120.00006 * 0.02562 * 21 20 10
39 39 H 1.08004 * 119.99747 * 180.27961 * 22 21 20
40 40 H 1.07997 * 120.00121 * 179.83516 * 23 22 21
41 41 H 1.08004 * 119.99444 * 179.97438 * 24 23 22
42 42 H 1.08001 * 120.00526 * 179.97438 * 25 24 23
43 43 H 1.08997 * 109.46741 * 60.00390 * 26 5 4
44 44 H 1.08997 * 109.47173 * 60.00655 * 27 26 5
45 45 H 1.09005 * 109.46706 * 180.02562 * 27 26 5
46 46 H 1.09001 * 109.47304 * 299.99855 * 27 26 5
47 47 H 1.09007 * 109.46598 * 60.00085 * 28 26 5
48 48 H 1.08993 * 109.46515 * 179.97438 * 28 26 5
49 49 H 1.08994 * 109.47153 * 300.00518 * 28 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4309 1.4601 -0.0006
5 6 3.8254 2.9383 0.0001
6 1 4.9083 3.0253 -0.0899
7 7 3.3879 3.5599 1.2524
8 6 4.0198 4.6558 1.7174
9 8 4.9503 5.1276 1.0989
10 6 3.5700 5.2949 3.0060
11 1 2.5308 5.6102 2.9118
12 6 3.6931 4.2991 4.1304
13 1 4.4842 3.5641 4.1166
14 6 2.7956 4.3265 5.1768
15 7 2.9935 3.5681 6.2327
16 14 1.2946 5.4352 5.0911
17 1 1.6590 6.7984 5.5537
18 1 0.8077 5.5017 3.6898
19 1 0.2239 4.8868 5.9617
20 6 4.4337 6.4945 3.2998
21 6 5.7750 6.3263 3.5889
22 6 6.5681 7.4270 3.8542
23 6 6.0180 8.6950 3.8395
24 6 4.6755 8.8627 3.5556
25 6 3.8834 7.7625 3.2860
26 6 3.1571 3.6450 -1.1809
27 6 3.5521 5.1231 -1.1806
28 6 3.6140 2.9958 -2.4888
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 3.8333 0.9766 -0.8908
35 1 3.8340 0.9763 0.8892
36 1 2.6435 3.1828 1.7469
37 1 2.3601 3.5844 6.9672
38 1 6.2040 5.3353 3.6038
39 1 7.6171 7.2959 4.0756
40 1 6.6371 9.5547 4.0493
41 1 4.2456 9.8535 3.5445
42 1 2.8344 7.8935 3.0646
43 1 2.0743 3.5579 -1.0909
44 1 4.6349 5.2098 -1.2709
45 1 3.0756 5.6267 -2.0217
46 1 3.2269 5.5860 -0.2488
47 1 3.3329 1.9426 -2.4892
48 1 3.1375 3.4990 -3.3300
49 1 4.6968 3.0828 -2.5788
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001361425906.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:31:25
Heat of formation + Delta-G solvation = -93.859080 kcal
Electronic energy + Delta-G solvation = -28198.184247 eV
Core-core repulsion = 24509.883014 eV
Total energy + Delta-G solvation = -3688.301234 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.23590 -39.87880 -38.92051 -36.99683 -35.50063 -34.07063 -33.25201 -32.25952
-31.61564 -29.91894 -29.05383 -27.66520 -25.52801 -24.10626 -23.63702 -23.34998
-22.55797 -20.92408 -20.81354 -19.10994 -17.92697 -17.85690 -17.49204 -17.19544
-16.61643 -16.42466 -16.07263 -15.80249 -15.62941 -15.39033 -14.87178 -14.63546
-14.40496 -14.15227 -13.92801 -13.82248 -13.65186 -13.60812 -13.46515 -13.26098
-13.02342 -12.87557 -12.76494 -12.64969 -12.41734 -12.14627 -12.01605 -12.00002
-11.94431 -11.64639 -11.59448 -11.51233 -11.37234 -10.85651 -10.52158 -10.40495
-9.76155 -9.62700 -9.35202 -8.35242 -6.41306 0.65658 0.72485 1.32947
1.35677 1.41386 1.96689 2.29457 2.47766 2.78156 2.95866 3.18251
3.74102 3.92717 4.10600 4.15506 4.21186 4.22643 4.28742 4.33340
4.38042 4.38850 4.41290 4.49675 4.52114 4.55501 4.60311 4.71941
4.83036 4.83366 4.87236 4.91184 4.95185 5.05734 5.08430 5.09871
5.20461 5.24679 5.30850 5.33295 5.41918 5.45803 5.54720 5.70727
5.74549 5.79523 5.96167 6.21052 6.28474 6.31768 6.60255 6.78940
7.23375 7.55473 8.79560
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.011469 B = 0.004996 C = 0.003920
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2440.789754 B = 5602.645707 C = 7141.479927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.051 3.949
3 O -0.398 6.398
4 C 0.061 3.939
5 C 0.151 3.849
6 H 0.081 0.919
7 N -0.714 5.714
8 C 0.535 3.465
9 O -0.574 6.574
10 C 0.023 3.977
11 H 0.069 0.931
12 C -0.498 4.498
13 H 0.039 0.961
14 C 0.038 3.962
15 N -0.929 5.929
16 Si 0.919 3.081
17 H -0.265 1.265
18 H -0.241 1.241
19 H -0.282 1.282
20 C -0.052 4.052
21 C -0.101 4.101
22 C -0.133 4.133
23 C -0.137 4.137
24 C -0.125 4.125
25 C -0.154 4.154
26 C -0.095 4.095
27 C -0.131 4.131
28 C -0.136 4.136
29 H 0.089 0.911
30 H 0.049 0.951
31 H 0.063 0.937
32 H 0.065 0.935
33 H 0.045 0.955
34 H 0.089 0.911
35 H 0.047 0.953
36 H 0.406 0.594
37 H 0.269 0.731
38 H 0.089 0.911
39 H 0.134 0.866
40 H 0.150 0.850
41 H 0.147 0.853
42 H 0.117 0.883
43 H 0.073 0.927
44 H 0.045 0.955
45 H 0.057 0.943
46 H 0.028 0.972
47 H 0.067 0.933
48 H 0.064 0.936
49 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.715 -1.370 -14.115 14.439
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.026 4.026
3 O -0.318 6.318
4 C -0.016 4.016
5 C 0.047 3.953
6 H 0.099 0.901
7 N -0.364 5.364
8 C 0.324 3.676
9 O -0.454 6.454
10 C 0.002 3.998
11 H 0.086 0.914
12 C -0.536 4.536
13 H 0.057 0.943
14 C -0.162 4.162
15 N -0.567 5.567
16 Si 0.743 3.257
17 H -0.190 1.190
18 H -0.165 1.165
19 H -0.208 1.208
20 C -0.053 4.053
21 C -0.119 4.119
22 C -0.151 4.151
23 C -0.155 4.155
24 C -0.143 4.143
25 C -0.172 4.172
26 C -0.114 4.114
27 C -0.189 4.189
28 C -0.193 4.193
29 H 0.108 0.892
30 H 0.068 0.932
31 H 0.082 0.918
32 H 0.084 0.916
33 H 0.063 0.937
34 H 0.107 0.893
35 H 0.066 0.934
36 H 0.241 0.759
37 H 0.079 0.921
38 H 0.107 0.893
39 H 0.152 0.848
40 H 0.167 0.833
41 H 0.164 0.836
42 H 0.135 0.865
43 H 0.091 0.909
44 H 0.064 0.936
45 H 0.076 0.924
46 H 0.047 0.953
47 H 0.086 0.914
48 H 0.083 0.917
49 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -2.252 -0.973 -14.378 14.585
hybrid contribution -0.682 -0.369 1.013 1.276
sum -2.934 -1.342 -13.364 13.748
Atomic orbital electron populations
1.21748 0.93162 1.03185 1.02505 1.22632 0.96163 0.83012 1.00748
1.87886 1.20617 1.27776 1.95525 1.22758 0.82101 0.95010 1.01725
1.21171 0.98982 0.91102 0.84089 0.90130 1.45875 1.36528 1.29369
1.24603 1.20751 0.81578 0.79925 0.85380 1.90568 1.30287 1.64280
1.60270 1.18433 0.96527 0.92725 0.92157 0.91377 1.20445 1.14268
1.14672 1.04197 0.94290 1.25666 1.00352 0.96155 0.94052 1.70002
1.37742 1.41550 1.07386 0.86117 0.79948 0.79970 0.79705 1.19042
1.16497 1.20800 1.20075 0.94629 0.94347 0.96214 1.20797 0.94081
0.98107 0.98920 1.21350 1.00188 0.92907 1.00692 1.21329 0.95559
0.97238 1.01361 1.21338 0.94359 0.98749 0.99851 1.21219 1.00155
0.92628 1.03171 1.21370 1.00571 0.94718 0.94775 1.21780 1.00831
0.96122 1.00134 1.21775 1.01228 1.00921 0.95399 0.89243 0.93192
0.91832 0.91632 0.93658 0.89284 0.93428 0.75901 0.92145 0.89280
0.84827 0.83267 0.83557 0.86475 0.90883 0.93582 0.92428 0.95301
0.91371 0.91658 0.92657
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.65 10.28 71.98 0.74 -1.91 16
2 C 0.05 1.01 6.66 71.98 0.48 1.49 16
3 O -0.40 -10.25 9.19 -148.98 -1.37 -11.62 16
4 C 0.06 1.53 5.17 71.98 0.37 1.90 16
5 C 0.15 4.64 2.24 44.99 0.10 4.74 16
6 H 0.08 2.69 7.58 -2.39 -0.02 2.68 16
7 N -0.71 -27.09 4.85 -442.53 -2.15 -29.23 16
8 C 0.54 23.66 5.40 87.66 0.47 24.14 16
9 O -0.57 -26.81 12.55 -3.04 -0.04 -26.85 16
10 C 0.02 1.09 1.97 -13.03 -0.03 1.06 16
11 H 0.07 3.13 4.81 -2.38 -0.01 3.12 16
12 C -0.50 -26.94 8.00 25.60 0.20 -26.74 16
13 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16
14 C 0.04 2.09 5.47 84.66 0.46 2.56 16
15 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16
16 Si 0.92 41.74 27.32 68.60 1.87 43.61 16
17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
18 H -0.24 -10.01 6.40 99.48 0.64 -9.37 16
19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
20 C -0.05 -2.37 4.30 -19.86 -0.09 -2.46 16
21 C -0.10 -4.59 8.32 22.27 0.19 -4.40 16
22 C -0.13 -5.00 10.05 22.27 0.22 -4.78 16
23 C -0.14 -4.47 10.05 22.27 0.22 -4.24 16
24 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16
25 C -0.15 -6.19 9.67 22.27 0.22 -5.97 16
26 C -0.09 -2.60 2.49 -10.79 -0.03 -2.63 16
27 C -0.13 -4.16 7.71 71.98 0.56 -3.60 16
28 C -0.14 -2.79 8.84 71.98 0.64 -2.16 16
29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
30 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16
31 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16
32 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16
33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
34 H 0.09 1.71 6.71 -2.39 -0.02 1.69 16
35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16
36 H 0.41 15.65 8.27 -92.71 -0.77 14.88 16
37 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16
38 H 0.09 4.40 7.89 -2.91 -0.02 4.37 16
39 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16
40 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16
41 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16
42 H 0.12 4.34 7.95 -2.91 -0.02 4.31 16
43 H 0.07 2.09 7.56 -2.39 -0.02 2.08 16
44 H 0.05 1.57 7.53 -2.39 -0.02 1.56 16
45 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16
46 H 0.03 1.06 5.77 -2.39 -0.01 1.05 16
47 H 0.07 1.21 6.55 -2.38 -0.02 1.20 16
48 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
49 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16
Total: -1.00 -66.60 389.59 3.67 -62.93
By element:
Atomic # 1 Polarization: 42.70 SS G_CDS: 0.09 Total: 42.79 kcal
Atomic # 6 Polarization: -31.97 SS G_CDS: 4.96 Total: -27.01 kcal
Atomic # 7 Polarization: -82.01 SS G_CDS: -1.85 Total: -83.86 kcal
Atomic # 8 Polarization: -37.06 SS G_CDS: -1.41 Total: -38.46 kcal
Atomic # 14 Polarization: 41.74 SS G_CDS: 1.87 Total: 43.61 kcal
Total: -66.60 3.67 -62.93 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001361425906.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.928 kcal
(2) G-P(sol) polarization free energy of solvation -66.597 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.525 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.931 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.859 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds