Wall clock time and date at job start Tue Mar 31 2020 12:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47287 * 2 1 4 4 C 1.53002 * 109.47432 * 120.00253 * 2 1 3 5 5 C 1.53000 * 109.47231 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46769 * 299.99281 * 5 4 2 7 7 C 1.52996 * 109.47361 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47220 * 175.00199 * 7 6 5 9 9 O 1.21290 * 120.00012 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99736 * 179.97438 * 8 7 6 11 11 C 1.40159 * 119.99983 * 179.97438 * 10 8 7 12 12 C 1.40409 * 125.97033 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.73843 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97718 * 179.97438 * 11 10 8 25 25 C 1.53002 * 109.46657 * 60.00367 * 6 5 4 26 26 C 1.52994 * 109.47453 * 299.99576 * 25 6 5 27 27 H 1.08996 * 109.46899 * 299.99897 * 1 2 3 28 28 H 1.08995 * 109.46706 * 59.99789 * 1 2 3 29 29 H 1.08996 * 109.46726 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47702 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47367 * 300.00276 * 3 2 1 32 32 H 1.09004 * 109.47103 * 59.99916 * 3 2 1 33 33 H 1.08993 * 109.46905 * 59.99585 * 4 2 1 34 34 H 1.09004 * 109.46701 * 299.99927 * 4 2 1 35 35 H 1.08997 * 109.46849 * 180.02562 * 5 4 2 36 36 H 1.08992 * 109.47692 * 59.99209 * 5 4 2 37 37 H 1.09002 * 109.47056 * 300.00918 * 6 5 4 38 38 H 1.09001 * 109.46879 * 55.00059 * 7 6 5 39 39 H 1.09006 * 109.47056 * 295.00635 * 7 6 5 40 40 H 0.97003 * 120.00166 * 0.02562 * 10 8 7 41 41 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 42 42 H 1.08003 * 126.07024 * 180.26845 * 13 12 11 43 43 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 44 44 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 45 45 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 46 46 H 1.09001 * 109.47462 * 60.00497 * 25 6 5 47 47 H 1.09004 * 109.46701 * 179.97438 * 25 6 5 48 48 H 1.09002 * 109.47785 * 300.00384 * 26 25 6 49 49 H 1.09002 * 109.47549 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0805 -1.4417 0.0002 7 6 5.6105 -1.4418 0.0007 8 6 6.1132 -2.2564 -1.1632 9 8 5.3252 -2.7846 -1.9191 10 7 7.4383 -2.3972 -1.3648 11 6 7.9059 -3.1553 -2.4470 12 6 7.1098 -3.8188 -3.3943 13 6 7.9348 -4.4289 -4.2753 14 7 9.2052 -4.1718 -3.8991 15 6 10.4155 -4.6448 -4.5756 16 6 11.2894 -3.4672 -4.9233 17 1 10.9748 -2.4667 -4.6657 18 6 12.4904 -3.6671 -5.5702 19 7 12.8760 -4.8859 -5.8791 20 14 13.5739 -2.2075 -6.0006 21 1 14.8035 -2.6874 -6.6810 22 1 12.8335 -1.2909 -6.9045 23 1 13.9459 -1.4840 -4.7583 24 7 9.1641 -3.3683 -2.7525 25 6 3.5704 -0.7204 -1.2490 26 6 2.0405 -0.7209 -1.2493 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3632 -1.0276 0.0005 30 1 3.1301 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 1.2492 34 1 1.6767 -0.2074 2.1392 35 1 3.9334 -1.2350 2.1392 36 1 3.9331 0.3070 1.2496 37 1 3.7174 -2.4695 0.0000 38 1 5.9735 -1.8763 0.9321 39 1 5.9739 -0.4180 -0.0885 40 1 8.0685 -1.9745 -0.7606 41 1 6.0301 -3.8349 -3.4182 42 1 7.6309 -5.0188 -5.1274 43 1 10.1389 -5.1736 -5.4877 44 1 10.9606 -5.3194 -3.9155 45 1 12.3135 -5.6439 -5.6555 46 1 3.9335 0.3073 -1.2489 47 1 3.9345 -1.2338 -2.1390 48 1 1.6774 -1.7487 -1.2495 49 1 1.6771 -0.2075 -2.1395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152571663.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:28 Heat of formation + Delta-G solvation = 7.304187 kcal Electronic energy + Delta-G solvation = -26621.348905 eV Core-core repulsion = 22969.727191 eV Total energy + Delta-G solvation = -3651.621714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.84783 -40.11138 -38.93829 -34.98836 -34.36522 -33.66653 -31.05177 -30.97279 -29.50054 -29.30258 -27.60847 -26.38441 -25.10338 -23.08913 -22.94114 -21.77477 -20.79647 -20.11982 -19.53414 -18.67324 -17.19437 -16.92879 -16.50755 -15.66340 -15.45114 -15.23966 -15.05166 -14.40272 -14.29172 -14.19833 -13.89592 -13.79247 -13.51672 -13.21944 -12.91109 -12.51309 -12.49103 -12.33900 -12.15477 -12.08554 -11.97454 -11.82225 -11.67989 -11.48921 -11.17686 -11.12712 -10.98951 -10.82028 -10.47925 -10.36457 -10.30374 -10.17023 -10.15460 -9.95171 -9.45410 -9.00626 -8.59098 -8.20378 -7.52271 -6.59022 -4.33071 2.30923 2.74899 2.86710 3.36953 3.38668 3.57557 3.66837 3.79895 4.34735 4.38903 4.40528 4.47472 4.63683 4.76549 4.84484 5.01458 5.14513 5.14808 5.18303 5.26074 5.33641 5.34346 5.42262 5.44443 5.46647 5.48589 5.56316 5.69678 5.70880 5.72110 5.76475 5.80213 5.88934 5.97524 6.02155 6.11458 6.17073 6.20683 6.36654 6.40087 6.41567 6.52112 6.61243 6.74370 7.36592 7.48312 7.70677 7.82748 8.26057 8.33297 8.54179 8.61696 9.35113 10.78467 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.027821 B = 0.002146 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.189193 B =13046.472101 C =13288.498776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C -0.144 4.144 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.069 4.069 7 C -0.134 4.134 8 C 0.518 3.482 9 O -0.514 6.514 10 N -0.634 5.634 11 C 0.259 3.741 12 C -0.285 4.285 13 C 0.049 3.951 14 N -0.318 5.318 15 C 0.249 3.751 16 C -0.607 4.607 17 H 0.063 0.937 18 C 0.022 3.978 19 N -0.904 5.904 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.303 5.303 25 C -0.123 4.123 26 C -0.105 4.105 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.410 0.590 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.046 0.954 44 H 0.034 0.966 45 H 0.267 0.733 46 H 0.058 0.942 47 H 0.084 0.916 48 H 0.061 0.939 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.058 9.419 14.403 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.201 4.201 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.088 4.088 7 C -0.174 4.174 8 C 0.304 3.696 9 O -0.388 6.388 10 N -0.282 5.282 11 C 0.005 3.995 12 C -0.316 4.316 13 C -0.100 4.100 14 N -0.100 5.100 15 C 0.131 3.869 16 C -0.646 4.646 17 H 0.081 0.919 18 C -0.182 4.182 19 N -0.540 5.540 20 Si 0.904 3.096 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.134 5.134 25 C -0.160 4.160 26 C -0.142 4.142 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.245 0.755 41 H 0.179 0.821 42 H 0.184 0.816 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.080 0.920 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.880 9.633 13.415 25.845 hybrid contribution -1.840 -0.423 0.773 2.040 sum -21.720 9.210 14.188 27.529 Atomic orbital electron populations 1.21867 0.94946 1.01614 1.01467 1.20568 0.94925 0.95573 0.95650 1.21971 1.01605 0.95298 1.01260 1.21553 0.95334 1.00419 0.97015 1.21648 0.95735 1.00824 0.97238 1.20907 0.91732 1.00867 0.95254 1.21750 0.97919 1.00890 0.96817 1.20746 0.80923 0.81144 0.86746 1.90605 1.54743 1.46996 1.46472 1.42615 1.07698 1.50476 1.27364 1.19162 0.91905 0.97262 0.91147 1.21534 1.01179 1.09819 0.99065 1.22570 0.84867 1.01971 1.00636 1.48779 1.06444 1.35807 1.18924 1.19756 0.79640 0.96455 0.91046 1.22096 1.06464 0.93497 1.42509 0.91875 1.25932 0.96455 1.02305 0.93548 1.70852 1.39876 0.98654 1.44602 0.83417 0.75835 0.73725 0.76635 1.20513 1.21235 1.21138 1.77347 1.15961 1.15933 1.04199 1.21770 0.95250 1.00164 0.98862 1.21548 0.95826 1.00253 0.96585 0.92928 0.92786 0.92764 0.91904 0.92952 0.93093 0.91984 0.92190 0.92029 0.91559 0.90261 0.88623 0.88643 0.75457 0.82132 0.81568 0.93643 0.94792 0.92283 0.92355 0.89790 0.91994 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.48 37.16 0.31 -0.63 16 2 C -0.07 -0.49 0.77 -154.50 -0.12 -0.60 16 3 C -0.14 -1.00 7.78 37.16 0.29 -0.71 16 4 C -0.11 -0.73 4.73 -26.73 -0.13 -0.86 16 5 C -0.12 -0.80 4.93 -26.73 -0.13 -0.93 16 6 C -0.07 -0.60 1.84 -90.62 -0.17 -0.77 16 7 C -0.13 -1.15 5.18 -27.89 -0.14 -1.29 16 8 C 0.52 6.90 7.51 -10.99 -0.08 6.82 16 9 O -0.51 -8.32 11.10 5.55 0.06 -8.26 16 10 N -0.63 -9.51 5.45 -11.13 -0.06 -9.57 16 11 C 0.26 5.17 8.11 -154.39 -1.25 3.92 16 12 C -0.28 -5.64 9.61 -39.83 -0.38 -6.02 16 13 C 0.05 0.99 11.44 -17.24 -0.20 0.80 16 14 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 15 C 0.25 6.35 5.57 -5.19 -0.03 6.32 16 16 C -0.61 -17.16 9.24 -34.44 -0.32 -17.48 16 17 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 18 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 19 N -0.90 -26.39 13.65 55.43 0.76 -25.63 16 20 Si 1.08 24.95 29.90 -169.99 -5.08 19.87 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 N -0.30 -7.06 12.42 31.44 0.39 -6.67 16 25 C -0.12 -1.20 4.67 -26.73 -0.12 -1.32 16 26 C -0.10 -0.91 4.73 -26.73 -0.13 -1.04 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.44 4.81 -51.93 -0.25 0.19 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 37 H 0.08 0.82 7.96 -51.93 -0.41 0.40 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.41 4.99 8.82 -40.82 -0.36 4.63 16 41 H 0.16 3.06 5.92 -52.49 -0.31 2.75 16 42 H 0.17 2.74 8.06 -52.48 -0.42 2.32 16 43 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 44 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 45 H 0.27 7.62 7.22 -40.82 -0.29 7.32 16 46 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 47 H 0.08 1.05 5.95 -51.93 -0.31 0.74 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -32.67 380.58 -9.26 -41.92 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.13 Total: 3.57 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.69 Total: -13.26 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.86 Total: -49.59 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.06 Total: -8.26 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.67 -9.26 -41.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152571663.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.226 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds