Wall clock time and date at job start Tue Mar 31 2020 13:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34487 * 125.57679 * 2 1 4 4 C 1.46685 * 106.33398 * 180.02562 * 3 2 1 5 5 C 1.47262 * 126.94367 * 179.97438 * 4 3 2 6 6 O 1.21631 * 120.00079 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99836 * 0.02562 * 5 4 3 8 8 C 1.46502 * 120.00065 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.46759 * 34.99623 * 8 7 5 10 10 C 1.53002 * 109.46943 * 275.00181 * 8 7 5 11 11 C 1.52997 * 109.47195 * 155.00215 * 8 7 5 12 12 H 1.08996 * 109.52583 * 304.91843 * 11 8 7 13 13 C 1.53040 * 109.49686 * 184.83769 * 11 8 7 14 14 C 1.53080 * 109.65611 * 178.74821 * 13 11 8 15 15 C 1.53185 * 109.29449 * 61.15481 * 14 13 11 16 16 N 1.46926 * 108.89609 * 305.57321 * 15 14 13 17 17 C 1.36930 * 120.63383 * 233.56420 * 16 15 14 18 18 H 1.08001 * 120.00048 * 151.82243 * 17 16 15 19 19 C 1.38810 * 119.99962 * 331.81955 * 17 16 15 20 20 N 1.31613 * 120.00273 * 343.07970 * 19 17 16 21 21 Si 1.86803 * 119.99828 * 163.07261 * 19 17 16 22 22 H 1.48498 * 109.47234 * 90.00142 * 21 19 17 23 23 H 1.48503 * 109.47064 * 210.00127 * 21 19 17 24 24 H 1.48502 * 109.47357 * 330.00436 * 21 19 17 25 25 C 1.46928 * 118.73428 * 53.53798 * 16 15 14 26 26 C 1.36778 * 106.11586 * 0.24114 * 4 3 2 27 27 C 1.50695 * 125.80005 * 179.72364 * 26 4 3 28 28 N 1.34658 * 108.39658 * 359.60813 * 26 4 3 29 29 H 0.96999 * 124.85587 * 180.13990 * 28 26 4 30 30 H 1.08993 * 109.47272 * 89.99732 * 1 2 3 31 31 H 1.08995 * 109.47551 * 209.99907 * 1 2 3 32 32 H 1.09004 * 109.46407 * 330.00028 * 1 2 3 33 33 H 1.07993 * 126.83039 * 0.04152 * 3 2 1 34 34 H 0.96995 * 119.99845 * 0.02562 * 7 5 4 35 35 H 1.09008 * 109.47334 * 299.99832 * 10 8 7 36 36 H 1.08997 * 109.47293 * 59.99607 * 10 8 7 37 37 H 1.09004 * 109.47355 * 180.02562 * 10 8 7 38 38 H 1.09002 * 109.45890 * 298.70055 * 13 11 8 39 39 H 1.09000 * 109.45953 * 58.67434 * 13 11 8 40 40 H 1.09002 * 109.38927 * 301.27278 * 14 13 11 41 41 H 1.09007 * 109.61882 * 181.16916 * 14 13 11 42 42 H 1.09000 * 109.58442 * 185.71851 * 15 14 13 43 43 H 1.09001 * 109.58949 * 65.43473 * 15 14 13 44 44 H 0.96997 * 120.00271 * 180.02562 * 20 19 17 45 45 H 1.09006 * 109.58577 * 66.18627 * 25 16 15 46 46 H 1.09002 * 109.58869 * 186.45857 * 25 16 15 47 47 H 1.09001 * 109.47292 * 89.99638 * 27 26 4 48 48 H 1.09007 * 109.47346 * 209.99925 * 27 26 4 49 49 H 1.08998 * 109.47565 * 329.99779 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2895 1.0938 0.0000 4 6 3.6744 0.6104 -0.0006 5 6 4.8979 1.4299 -0.0014 6 8 5.9894 0.8932 -0.0023 7 7 4.8082 2.7747 -0.0010 8 6 6.0254 3.5900 -0.0024 9 1 6.7950 3.0928 -0.5927 10 6 6.5208 3.7690 1.4341 11 6 5.7208 4.9601 -0.6113 12 1 5.2859 4.8298 -1.6022 13 6 7.0156 5.7682 -0.7240 14 6 6.7200 7.1281 -1.3617 15 6 5.7396 7.9010 -0.4740 16 7 4.5509 7.0694 -0.2416 17 6 3.2982 7.5516 -0.5124 18 1 2.5045 6.8711 -0.7831 19 6 3.0485 8.9151 -0.4390 20 7 3.8872 9.7044 0.1981 21 14 1.5222 9.6298 -1.2446 22 1 0.4002 9.6239 -0.2719 23 1 1.7966 11.0242 -1.6753 24 1 1.1563 8.8093 -2.4271 25 6 4.7319 5.7103 0.2865 26 6 3.5997 -0.7553 -0.0065 27 6 4.7721 -1.7022 -0.0152 28 7 2.3007 -1.1100 -0.0006 29 1 1.9756 -2.0239 -0.0010 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3632 0.8901 0.5139 33 1 1.9630 2.1233 0.0006 34 1 3.9378 3.2026 0.0001 35 1 5.7511 4.2662 2.0247 36 1 6.7377 2.7930 1.8680 37 1 7.4262 4.3760 1.4333 38 1 7.4369 5.9194 0.2699 39 1 7.7300 5.2250 -1.3426 40 1 6.2780 6.9775 -2.3466 41 1 7.6458 7.6949 -1.4607 42 1 5.4471 8.8256 -0.9716 43 1 6.2149 8.1336 0.4790 44 1 3.7125 10.6571 0.2497 45 1 5.1263 5.7621 1.3013 46 1 3.7740 5.1902 0.2930 47 1 5.0587 -1.9350 1.0104 48 1 4.4936 -2.6206 -0.5321 49 1 5.6120 -1.2359 -0.5301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025546921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:14 Heat of formation + Delta-G solvation = 7.243491 kcal Electronic energy + Delta-G solvation = -27526.001586 eV Core-core repulsion = 23874.377240 eV Total energy + Delta-G solvation = -3651.624346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41571 -39.35813 -37.74948 -35.03463 -33.01170 -32.70423 -31.60386 -30.40340 -30.33378 -29.27907 -27.96177 -25.26245 -25.19233 -23.84799 -22.34304 -21.86729 -20.60693 -20.09815 -19.40240 -18.40723 -17.11301 -16.69500 -15.84189 -15.54815 -15.27920 -14.81472 -14.52663 -14.11162 -13.95808 -13.84563 -13.59674 -13.42373 -13.36299 -13.23171 -12.98316 -12.67638 -12.43361 -12.37530 -12.28100 -12.23437 -12.14432 -11.71657 -11.57614 -11.50516 -10.95571 -10.85301 -10.47865 -10.41113 -10.13829 -10.04628 -9.81791 -9.65620 -9.46070 -9.33365 -8.95863 -8.65160 -8.42805 -8.08971 -6.61425 -5.76008 -3.18208 1.75826 2.28774 2.94293 3.38188 3.45539 3.47736 3.65074 3.73154 4.50974 4.63266 4.74526 4.94746 5.08165 5.11329 5.25232 5.30442 5.32985 5.45209 5.47428 5.52463 5.54528 5.63771 5.66700 5.76362 5.78594 5.82076 5.87655 5.96483 6.10731 6.17968 6.26795 6.32642 6.35242 6.45990 6.61117 6.66308 6.70316 6.76094 6.81961 6.84967 6.94025 6.94387 7.07631 7.31084 7.44941 7.71591 7.81590 7.92281 8.48070 8.60685 9.24363 9.88279 10.45468 11.32270 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.012898 B = 0.003536 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.439928 B = 7916.056155 C = 9753.007135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.008 3.992 3 C -0.162 4.162 4 C -0.230 4.230 5 C 0.590 3.410 6 O -0.560 6.560 7 N -0.715 5.715 8 C 0.152 3.848 9 H 0.080 0.920 10 C -0.164 4.164 11 C -0.112 4.112 12 H 0.071 0.929 13 C -0.100 4.100 14 C -0.142 4.142 15 C 0.170 3.830 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.152 3.848 26 C 0.101 3.899 27 C -0.093 4.093 28 N -0.552 5.552 29 H 0.412 0.588 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.147 0.853 34 H 0.401 0.599 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.017 0.983 44 H 0.253 0.747 45 H 0.025 0.975 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -20.617 -0.219 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C -0.186 4.186 4 C -0.239 4.239 5 C 0.379 3.621 6 O -0.440 6.440 7 N -0.366 5.366 8 C 0.047 3.953 9 H 0.098 0.902 10 C -0.222 4.222 11 C -0.133 4.133 12 H 0.089 0.911 13 C -0.138 4.138 14 C -0.182 4.182 15 C 0.044 3.956 16 N -0.313 5.313 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.025 3.975 26 C -0.016 4.016 27 C -0.150 4.150 28 N -0.148 5.148 29 H 0.248 0.752 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.164 0.836 34 H 0.236 0.764 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.035 0.965 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.065 0.935 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.903 -20.872 -0.190 20.892 hybrid contribution -1.465 0.318 -0.373 1.545 sum -2.368 -20.554 -0.563 20.697 Atomic orbital electron populations 1.20329 0.87756 1.03346 1.02746 1.20205 0.93453 0.85947 1.10495 1.21891 0.90906 0.97983 1.07810 1.20191 0.93121 0.92224 1.18412 1.17329 0.87559 0.81850 0.75333 1.90694 1.28668 1.72570 1.52108 1.45952 1.10239 1.05582 1.74796 1.20969 0.86562 0.90901 0.96849 0.90171 1.22256 1.01730 1.01484 0.96729 1.21932 0.98269 0.92529 1.00578 0.91056 1.21421 0.95632 0.96317 1.00458 1.22186 0.99577 0.96030 1.00364 1.20770 0.85264 0.94125 0.95418 1.44013 1.02764 1.10550 1.74010 1.19149 0.87928 0.91121 1.39968 0.91842 1.25021 0.97865 0.97457 0.99232 1.70032 1.37832 1.04119 1.42645 0.86343 0.82883 0.78376 0.79447 1.21439 1.21605 1.20512 1.20993 0.95467 0.86992 0.94026 1.20276 0.84767 0.94294 1.02295 1.20551 0.94796 0.96314 1.03329 1.41509 1.05348 1.08649 1.59318 0.75181 0.91001 0.91939 0.89806 0.83566 0.76351 0.91713 0.92921 0.91630 0.92290 0.93582 0.92871 0.93269 0.89693 0.96505 0.93689 0.95691 0.93471 0.90602 0.92129 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.41 36.01 0.37 -0.19 16 2 C 0.01 0.08 7.13 -81.86 -0.58 -0.51 16 3 C -0.16 -1.96 10.45 -37.50 -0.39 -2.35 16 4 C -0.23 -3.16 6.29 -103.35 -0.65 -3.81 16 5 C 0.59 9.32 7.77 -12.59 -0.10 9.23 16 6 O -0.56 -9.99 14.48 5.25 0.08 -9.91 16 7 N -0.72 -10.79 5.01 -54.93 -0.28 -11.06 16 8 C 0.15 2.37 2.35 -67.93 -0.16 2.21 16 9 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 10 C -0.16 -2.46 8.76 37.16 0.33 -2.14 16 11 C -0.11 -1.94 2.28 -90.50 -0.21 -2.15 16 12 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.10 -1.70 4.88 -26.67 -0.13 -1.83 16 14 C -0.14 -2.74 6.09 -26.59 -0.16 -2.90 16 15 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 16 N -0.59 -14.58 3.00 -172.32 -0.52 -15.10 16 17 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 18 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 19 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.07 11.20 55.49 0.62 -25.45 16 21 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.15 3.07 5.26 -3.71 -0.02 3.05 16 26 C 0.10 1.16 7.17 -81.88 -0.59 0.57 16 27 C -0.09 -0.90 9.88 36.00 0.36 -0.54 16 28 N -0.55 -4.92 5.90 -5.42 -0.03 -4.95 16 29 H 0.41 2.27 8.96 -40.82 -0.37 1.90 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.15 1.64 7.69 -52.49 -0.40 1.24 16 34 H 0.40 5.74 6.40 -40.82 -0.26 5.48 16 35 H 0.06 1.00 6.23 -51.92 -0.32 0.68 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.94 6.59 -51.93 -0.34 0.59 16 38 H 0.06 0.99 6.62 -51.93 -0.34 0.65 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 2.27 6.06 -51.93 -0.31 1.96 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.03 0.52 6.06 -51.93 -0.31 0.21 16 46 H 0.05 0.92 6.75 -51.93 -0.35 0.57 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 49 H 0.10 1.22 6.47 -51.93 -0.34 0.88 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -32.22 380.19 -9.56 -41.78 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.95 Total: 6.79 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.18 Total: -4.30 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.20 Total: -56.56 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.22 -9.56 -41.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025546921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.024 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds