Wall clock time and date at job start Tue Mar 31 2020 12:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34481 * 125.57527 * 2 1 4 4 C 1.46684 * 106.33517 * 180.14704 * 3 2 1 5 5 C 1.47260 * 126.94290 * 179.82573 * 4 3 2 6 6 O 1.21627 * 119.99961 * 179.68533 * 5 4 3 7 7 N 1.34773 * 120.00217 * 359.69414 * 5 4 3 8 8 C 1.46496 * 120.00487 * 179.97438 * 7 5 4 9 9 H 1.09005 * 109.24787 * 324.65725 * 8 7 5 10 10 C 1.54842 * 109.36378 * 204.99619 * 8 7 5 11 11 C 1.50126 * 110.78149 * 200.90078 * 10 8 7 12 12 C 1.52536 * 105.41487 * 97.70459 * 11 10 8 13 13 C 1.46235 * 114.27461 * 270.59718 * 12 11 10 14 14 N 1.50169 * 107.53521 * 58.40762 * 13 12 11 15 15 C 1.36937 * 120.53687 * 109.61197 * 14 13 12 16 16 H 1.08002 * 120.00389 * 156.70890 * 15 14 13 17 17 C 1.38815 * 119.99816 * 336.70025 * 15 14 13 18 18 N 1.31611 * 120.00423 * 340.42362 * 17 15 14 19 19 Si 1.86803 * 119.99583 * 160.42022 * 17 15 14 20 20 H 1.48500 * 109.47245 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46622 * 120.00497 * 19 17 15 22 22 H 1.48497 * 109.47076 * 240.00127 * 19 17 15 23 23 C 1.43430 * 118.92475 * 289.58399 * 14 13 12 24 24 C 1.36767 * 106.11426 * 359.56825 * 4 3 2 25 25 C 1.50700 * 125.80159 * 180.23786 * 24 4 3 26 26 N 1.34661 * 108.39852 * 0.26498 * 24 4 3 27 27 C 1.46499 * 124.85133 * 179.97438 * 26 24 4 28 28 H 1.08994 * 109.46696 * 270.33676 * 1 2 3 29 29 H 1.09003 * 109.46720 * 30.33726 * 1 2 3 30 30 H 1.08999 * 109.46849 * 150.33368 * 1 2 3 31 31 H 1.08004 * 126.83142 * 359.97124 * 3 2 1 32 32 H 0.97005 * 119.99830 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.20851 * 80.58170 * 10 8 7 34 34 H 1.08999 * 109.20622 * 321.22482 * 10 8 7 35 35 H 1.08992 * 110.25045 * 216.67425 * 11 10 8 36 36 H 1.08998 * 110.24884 * 338.73456 * 11 10 8 37 37 H 1.08998 * 108.52275 * 31.83814 * 12 11 10 38 38 H 1.08995 * 108.52061 * 149.51013 * 12 11 10 39 39 H 1.08999 * 109.84463 * 177.91334 * 13 12 11 40 40 H 1.09002 * 109.84816 * 298.89859 * 13 12 11 41 41 H 0.96994 * 120.00374 * 179.97438 * 18 17 15 42 42 H 1.08997 * 108.15828 * 213.28919 * 23 14 13 43 43 H 1.09002 * 108.16012 * 329.85710 * 23 14 13 44 44 H 1.08997 * 109.47058 * 90.02851 * 25 24 4 45 45 H 1.09004 * 109.47235 * 210.02371 * 25 24 4 46 46 H 1.08999 * 109.47440 * 330.03037 * 25 24 4 47 47 H 1.08992 * 109.47584 * 89.99428 * 27 26 24 48 48 H 1.09000 * 109.46534 * 209.99622 * 27 26 24 49 49 H 1.09003 * 109.47119 * 329.98812 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6104 -0.0036 5 6 4.8978 1.4300 -0.0085 6 8 5.9893 0.8934 -0.0054 7 7 4.8081 2.7747 -0.0163 8 6 6.0252 3.5901 -0.0206 9 1 6.7908 3.0962 0.5778 10 6 5.7146 4.9794 0.5885 11 6 6.7372 5.9905 0.1578 12 6 6.1059 6.7304 -1.0173 13 6 6.3708 6.1244 -2.3215 14 7 5.8486 4.7170 -2.2809 15 6 4.7383 4.3658 -3.0014 16 1 4.5792 3.3345 -3.2799 17 6 3.8172 5.3353 -3.3738 18 7 3.7821 6.4879 -2.7394 19 14 2.6275 5.0040 -4.7753 20 1 2.8698 3.6435 -5.3192 21 1 1.2331 5.0946 -4.2728 22 1 2.8336 6.0102 -5.8478 23 6 6.5319 3.7465 -1.4757 24 6 3.5998 -0.7552 0.0044 25 6 4.7722 -1.7020 0.0094 26 7 2.3008 -1.1099 0.0064 27 6 1.8099 -2.4902 0.0140 28 1 -0.3632 0.0060 1.0276 29 1 -0.3633 0.8870 -0.5191 30 1 -0.3633 -0.8930 -0.5086 31 1 1.9630 2.1233 -0.0004 32 1 3.9376 3.2027 -0.0191 33 1 5.7210 4.9037 1.6759 34 1 4.7280 5.3036 0.2574 35 1 6.9475 6.6846 0.9715 36 1 7.6522 5.4902 -0.1591 37 1 5.0273 6.7663 -0.8647 38 1 6.4870 7.7515 -1.0285 39 1 5.8581 6.6869 -3.1019 40 1 7.4435 6.1156 -2.5146 41 1 3.1388 7.1654 -2.9998 42 1 6.4516 2.7782 -1.9696 43 1 7.5872 4.0171 -1.4399 44 1 5.0549 -1.9247 1.0383 45 1 4.4956 -2.6255 -0.4993 46 1 5.6140 -1.2408 -0.5070 47 1 1.6883 -2.8270 1.0434 48 1 0.8495 -2.5370 -0.4995 49 1 2.5265 -3.1335 -0.4966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034515421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:02 Heat of formation + Delta-G solvation = 31.063271 kcal Electronic energy + Delta-G solvation = -28453.413531 eV Core-core repulsion = 24802.822088 eV Total energy + Delta-G solvation = -3650.591443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.26864 -38.88192 -37.35192 -34.01950 -33.08066 -32.70250 -32.47711 -30.87581 -29.79200 -29.04336 -26.73509 -25.88373 -24.74151 -23.80670 -22.87558 -21.50351 -20.01173 -19.48580 -18.97224 -18.27362 -16.71758 -16.50323 -15.75479 -15.42545 -15.19348 -14.86680 -14.46551 -14.18628 -13.82009 -13.60844 -13.37931 -13.25306 -13.15168 -12.89241 -12.82567 -12.41329 -12.37346 -12.26078 -12.15424 -12.03117 -11.68006 -11.65439 -11.42333 -11.23280 -11.19877 -10.72552 -10.62481 -10.38302 -9.98386 -9.84569 -9.61171 -9.35619 -9.16063 -9.08541 -8.50350 -8.39140 -8.11107 -7.75846 -6.58860 -5.72122 -3.09185 2.08096 2.59352 2.86176 3.40238 3.49234 3.52993 4.09041 4.21094 4.57131 4.62685 4.77384 4.91155 4.94826 5.10206 5.24967 5.35152 5.41281 5.49095 5.49952 5.58487 5.65235 5.72250 5.76930 5.82257 5.84965 6.06715 6.10870 6.15661 6.26220 6.33710 6.37934 6.51146 6.56019 6.65624 6.73812 6.98838 7.03567 7.04749 7.07858 7.15837 7.25596 7.35662 7.38395 7.48815 7.69147 7.84106 8.07235 8.42458 8.51913 9.08761 9.27889 9.95362 10.48537 11.34899 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.004724 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.451072 B = 5925.400592 C = 7275.885656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.001 3.999 3 C -0.157 4.157 4 C -0.221 4.221 5 C 0.588 3.412 6 O -0.570 6.570 7 N -0.696 5.696 8 C 0.120 3.880 9 H 0.070 0.930 10 C -0.110 4.110 11 C -0.112 4.112 12 C -0.130 4.130 13 C 0.164 3.836 14 N -0.584 5.584 15 C -0.232 4.232 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.902 5.902 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.292 1.292 23 C 0.152 3.848 24 C 0.093 3.907 25 C -0.088 4.088 26 N -0.445 5.445 27 C 0.069 3.931 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.145 0.855 32 H 0.400 0.600 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.023 0.977 39 H 0.089 0.911 40 H 0.004 0.996 41 H 0.250 0.750 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.102 0.898 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -12.274 7.986 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C -0.181 4.181 4 C -0.230 4.230 5 C 0.376 3.624 6 O -0.452 6.452 7 N -0.344 5.344 8 C 0.012 3.988 9 H 0.088 0.912 10 C -0.148 4.148 11 C -0.150 4.150 12 C -0.168 4.168 13 C 0.041 3.959 14 N -0.304 5.304 15 C -0.362 4.362 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.219 1.219 23 C 0.021 3.979 24 C -0.023 4.023 25 C -0.146 4.146 26 N -0.123 5.123 27 C -0.073 4.073 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.234 0.766 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.042 0.958 39 H 0.107 0.893 40 H 0.022 0.978 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.121 0.879 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.559 -12.808 7.916 15.472 hybrid contribution -1.361 0.138 -0.671 1.523 sum -4.920 -12.670 7.245 15.402 Atomic orbital electron populations 1.20291 0.88140 1.03092 1.02272 1.20127 0.93322 0.85560 1.11628 1.21866 0.91096 0.97704 1.07436 1.20246 0.93276 0.92097 1.17418 1.17236 0.87321 0.82019 0.75788 1.90655 1.28657 1.72695 1.53167 1.45755 1.10227 1.05190 1.73230 1.22710 0.86212 0.89733 1.00117 0.91238 1.21661 1.01253 0.94353 0.97518 1.20972 0.98118 0.97458 0.98433 1.21006 1.04005 0.96180 0.95629 1.20173 0.93149 0.85420 0.97171 1.44246 1.30487 1.06331 1.49368 1.19209 0.97861 0.93996 1.25108 0.91771 1.24822 0.97386 0.97485 1.00002 1.69973 1.37595 1.07164 1.40029 0.86345 0.80720 0.77504 0.82989 1.20581 1.22062 1.21870 1.20785 0.94089 0.93682 0.89321 1.20211 0.84364 0.94184 1.03499 1.20509 0.94972 0.96172 1.02904 1.43368 1.05196 1.06095 1.57648 1.22004 1.01314 0.80928 1.03088 0.91357 0.90007 0.92152 0.83680 0.76610 0.94406 0.90262 0.93392 0.92466 0.88134 0.95830 0.89325 0.97790 0.94014 0.94398 0.94793 0.90965 0.92483 0.87946 0.91019 0.89884 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.06 36.01 0.36 -0.41 16 2 C 0.00 0.01 6.85 -81.86 -0.56 -0.55 16 3 C -0.16 -2.51 10.45 -37.50 -0.39 -2.90 16 4 C -0.22 -3.93 6.29 -103.35 -0.65 -4.58 16 5 C 0.59 11.80 7.64 -12.60 -0.10 11.70 16 6 O -0.57 -12.46 14.47 5.25 0.08 -12.38 16 7 N -0.70 -13.72 5.08 -53.04 -0.27 -13.99 16 8 C 0.12 2.39 2.91 -65.98 -0.19 2.20 16 9 H 0.07 1.39 7.57 -51.93 -0.39 1.00 16 10 C -0.11 -2.06 5.23 -27.19 -0.14 -2.21 16 11 C -0.11 -2.05 5.76 -28.40 -0.16 -2.22 16 12 C -0.13 -2.74 5.02 -30.18 -0.15 -2.89 16 13 C 0.16 3.82 5.24 -5.20 -0.03 3.80 16 14 N -0.58 -14.21 2.60 -175.11 -0.46 -14.66 16 15 C -0.23 -6.17 9.63 -15.06 -0.14 -6.32 16 16 H 0.06 1.79 7.89 -52.49 -0.41 1.38 16 17 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 18 N -0.90 -24.22 9.43 55.49 0.52 -23.70 16 19 Si 0.89 21.54 29.60 -169.99 -5.03 16.51 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.15 3.36 4.78 -4.68 -0.02 3.34 16 24 C 0.09 1.42 6.89 -81.88 -0.56 0.86 16 25 C -0.09 -1.15 9.52 36.01 0.34 -0.81 16 26 N -0.45 -5.69 3.09 -115.28 -0.36 -6.05 16 27 C 0.07 0.54 10.61 59.85 0.63 1.18 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.48 6.94 -51.93 -0.36 0.12 16 31 H 0.15 2.22 7.70 -52.48 -0.40 1.82 16 32 H 0.40 7.77 7.57 -40.82 -0.31 7.46 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.69 6.59 -51.93 -0.34 1.35 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.04 6.28 -51.93 -0.33 0.72 16 37 H 0.10 2.42 5.29 -51.93 -0.27 2.15 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 2.30 6.05 -51.93 -0.31 1.99 16 40 H 0.00 0.09 8.12 -51.93 -0.42 -0.33 16 41 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.04 0.92 7.83 -51.93 -0.41 0.51 16 43 H 0.03 0.72 6.89 -51.93 -0.36 0.36 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.57 6.92 -51.93 -0.36 0.21 16 46 H 0.10 1.59 6.46 -51.93 -0.34 1.26 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.52 6.90 -51.93 -0.36 0.16 16 49 H 0.08 0.56 6.88 -51.93 -0.36 0.21 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -30.59 374.56 -9.55 -40.14 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.83 Total: 8.38 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.85 Total: 0.11 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.56 Total: -58.40 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.59 -9.55 -40.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034515421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.200 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds