Wall clock time and date at job start Tue Mar 31 2020 12:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99885 * 2 1 4 4 H 1.48507 * 109.46904 * 270.00078 * 3 2 1 5 5 H 1.48501 * 109.46690 * 29.99688 * 3 2 1 6 6 H 1.48491 * 109.47156 * 149.99997 * 3 2 1 7 7 C 1.38806 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99850 * 359.97438 * 7 2 1 10 10 C 1.46749 * 125.32907 * 180.02562 * 9 7 2 11 11 C 1.53930 * 106.75599 * 198.36126 * 10 9 7 12 12 H 1.09006 * 113.00551 * 209.14283 * 11 10 9 13 13 C 1.53961 * 109.25310 * 81.61168 * 11 10 9 14 14 N 1.46772 * 106.62895 * 221.80575 * 13 11 10 15 15 C 1.34776 * 125.34232 * 198.49559 * 14 13 11 16 16 O 1.21280 * 120.00129 * 180.02562 * 15 14 13 17 17 C 1.50693 * 119.99939 * 0.02583 * 15 14 13 18 18 H 1.08998 * 109.57693 * 60.26171 * 17 15 14 19 19 C 1.53140 * 109.58050 * 300.00259 * 17 15 14 20 20 N 1.46912 * 109.37229 * 240.20828 * 19 17 15 21 21 C 1.46944 * 111.05279 * 297.99527 * 20 19 17 22 22 C 1.53127 * 109.35385 * 61.95177 * 21 20 19 23 23 C 1.53384 * 108.84179 * 0.06930 * 22 21 20 24 24 C 1.53389 * 108.60386 * 58.92238 * 23 22 21 25 25 C 1.46946 * 111.05703 * 61.98458 * 20 19 17 26 26 C 1.46673 * 109.32127 * 18.52033 * 14 13 11 27 27 C 1.53728 * 107.94166 * 359.45006 * 26 14 13 28 28 H 1.08994 * 113.05791 * 220.00015 * 27 26 14 29 29 C 1.46743 * 125.38631 * 0.02562 * 9 7 2 30 30 H 0.97003 * 120.00001 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.01020 * 79.02112 * 10 9 7 32 32 H 1.08999 * 110.00628 * 317.69972 * 10 9 7 33 33 H 1.09001 * 110.02858 * 341.10165 * 13 11 10 34 34 H 1.09006 * 110.02656 * 102.51620 * 13 11 10 35 35 H 1.09000 * 109.48754 * 0.17508 * 19 17 15 36 36 H 1.08996 * 109.49078 * 120.21538 * 19 17 15 37 37 H 1.08997 * 109.49102 * 181.91775 * 21 20 19 38 38 H 1.09008 * 109.48756 * 301.98537 * 21 20 19 39 39 H 1.09001 * 109.57359 * 240.25898 * 22 21 20 40 40 H 1.09004 * 109.57222 * 119.87998 * 22 21 20 41 41 H 1.09011 * 110.75967 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.57342 * 181.26744 * 24 23 22 43 43 H 1.08994 * 109.57993 * 60.87873 * 24 23 22 44 44 H 1.09002 * 109.48779 * 58.00480 * 25 20 19 45 45 H 1.08998 * 109.48685 * 178.07465 * 25 20 19 46 46 H 1.08998 * 109.77151 * 239.83309 * 26 14 13 47 47 H 1.09001 * 109.77634 * 119.07287 * 26 14 13 48 48 H 1.08992 * 109.74901 * 59.50868 * 29 9 7 49 49 H 1.08999 * 109.76659 * 298.80021 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.9382 -3.7215 -0.0005 11 6 0.8522 -4.7087 -0.4648 12 1 0.9800 -5.7086 -0.0500 13 6 0.7682 -4.6849 -2.0020 14 7 -0.6585 -4.7131 -2.3451 15 6 -1.1648 -5.0539 -3.5468 16 8 -2.3645 -5.0432 -3.7246 17 6 -0.2402 -5.4483 -4.6695 18 1 0.3390 -6.3235 -4.3753 19 6 0.7080 -4.2879 -4.9851 20 7 0.5169 -3.8680 -6.3799 21 6 0.8442 -4.9585 -7.3090 22 6 -0.0994 -6.1383 -7.0592 23 6 -1.0626 -5.7705 -5.9236 24 6 -1.8441 -4.5154 -6.3320 25 6 -0.8516 -3.3810 -6.6020 26 6 -1.4470 -4.3117 -1.1753 27 6 -0.4715 -4.0253 -0.0223 28 1 -0.8310 -4.3873 0.9409 29 6 -0.1353 -2.5257 -0.0005 30 1 -0.4850 0.8401 -0.0004 31 1 2.2711 -3.9790 1.0049 32 1 2.7822 -3.7442 -0.6899 33 1 1.2268 -3.7741 -2.3869 34 1 1.2693 -5.5596 -2.4168 35 1 0.4924 -3.4511 -4.3207 36 1 1.7388 -4.6109 -4.8402 37 1 0.7267 -4.6097 -8.3349 38 1 1.8744 -5.2763 -7.1483 39 1 0.4810 -7.0164 -6.7758 40 1 -0.6670 -6.3502 -7.9653 41 1 -1.7508 -6.5909 -5.7196 42 1 -2.5183 -4.2265 -5.5257 43 1 -2.4186 -4.7206 -7.2352 44 1 -1.0560 -2.5504 -5.9264 45 1 -0.9550 -3.0450 -7.6337 46 1 -2.1248 -5.1174 -0.8934 47 1 -2.0186 -3.4128 -1.4066 48 1 -0.5508 -2.0421 -0.8845 49 1 -0.5487 -2.0684 0.8983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048823613.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:43 Heat of formation + Delta-G solvation = 6.711494 kcal Electronic energy + Delta-G solvation = -29159.586394 eV Core-core repulsion = 25507.938979 eV Total energy + Delta-G solvation = -3651.647415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34228 -39.66495 -37.87328 -34.98249 -32.50543 -32.25634 -31.57612 -30.95644 -29.92755 -29.41859 -25.73492 -25.51282 -24.10847 -23.10358 -22.94368 -22.43170 -20.11460 -19.42699 -19.24194 -17.50785 -17.33208 -16.79165 -16.51328 -16.23947 -15.90118 -15.38025 -14.75640 -14.33995 -14.15424 -13.68286 -13.24572 -13.18234 -13.05592 -12.85418 -12.64215 -12.29603 -12.24054 -12.20364 -12.03015 -11.95566 -11.83080 -11.55301 -11.50193 -11.44499 -10.99386 -10.88948 -10.82224 -10.44744 -10.35359 -10.26333 -10.11125 -10.08412 -9.87586 -9.65196 -9.37178 -8.62059 -8.38440 -8.18984 -6.85939 -5.74201 -3.08205 2.80925 3.21943 3.39460 3.44539 3.46424 3.92972 4.40697 4.45853 4.48319 4.71336 4.79948 4.91651 4.96370 5.06098 5.10596 5.14487 5.21089 5.23203 5.33424 5.38505 5.49195 5.51543 5.56004 5.64062 5.67323 5.72310 5.76534 5.84357 5.89605 5.90764 5.97685 6.07398 6.11287 6.13509 6.18115 6.26970 6.36036 6.40255 6.53359 6.56068 6.63379 6.78721 7.00783 7.04161 7.54167 7.54941 7.78649 7.80294 8.24017 8.37923 9.19614 9.80352 10.43628 11.37228 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.004245 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.385618 B = 6593.779861 C = 7376.289291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.112 4.112 12 H 0.088 0.912 13 C 0.111 3.889 14 N -0.605 5.605 15 C 0.533 3.467 16 O -0.545 6.545 17 C -0.134 4.134 18 H 0.095 0.905 19 C 0.062 3.938 20 N -0.526 5.526 21 C 0.051 3.949 22 C -0.149 4.149 23 C -0.065 4.065 24 C -0.160 4.160 25 C 0.051 3.949 26 C 0.122 3.878 27 C -0.123 4.123 28 H 0.090 0.910 29 C 0.185 3.815 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.051 0.949 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.447 -13.762 -10.714 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.132 4.132 12 H 0.107 0.893 13 C -0.012 4.012 14 N -0.338 5.338 15 C 0.321 3.679 16 O -0.423 6.423 17 C -0.157 4.157 18 H 0.113 0.887 19 C -0.067 4.067 20 N -0.246 5.246 21 C -0.077 4.077 22 C -0.188 4.188 23 C -0.085 4.085 24 C -0.199 4.199 25 C -0.078 4.078 26 C -0.001 4.001 27 C -0.143 4.143 28 H 0.108 0.892 29 C 0.060 3.940 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.069 0.931 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.079 -13.097 -10.977 17.089 hybrid contribution -0.107 0.130 0.310 0.353 sum -0.028 -12.967 -10.666 16.791 Atomic orbital electron populations 1.69954 1.04886 1.25114 1.56810 1.24788 0.95680 0.97682 1.01994 0.86140 0.78595 0.83529 0.77616 1.21545 1.21689 1.20680 1.19018 0.90425 0.82272 1.44201 0.90371 1.44228 1.01444 0.99908 1.87263 1.21159 0.93682 0.85760 0.97519 1.22908 0.97315 0.99119 0.93823 0.89326 1.22155 0.81453 1.01728 0.95821 1.48264 1.08325 1.66164 1.11042 1.20117 0.88737 0.77027 0.81997 1.90606 1.15858 1.54349 1.81525 1.22040 0.97854 1.01382 0.94375 0.88700 1.22309 0.98362 0.96113 0.89953 1.62509 1.24809 1.33653 1.03649 1.22227 0.98777 0.89813 0.96906 1.22289 0.98466 0.99358 0.98709 1.20891 0.96164 0.98859 0.92556 1.22473 0.99253 0.95334 1.02791 1.22238 0.86403 0.97199 1.01923 1.21788 0.93884 0.99741 0.84673 1.23144 0.93858 1.00519 0.96792 0.89173 1.21133 0.84572 0.86781 1.01521 0.93700 0.96273 0.94405 0.90011 0.91846 0.89453 0.89756 0.90677 0.90622 0.91690 0.91408 0.90040 0.88704 0.92148 0.90591 0.90827 0.92483 0.90950 0.93095 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.25 55.49 0.57 -25.96 16 2 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.20 10.25 -15.06 -0.15 -6.35 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.49 3.37 -171.85 -0.58 -15.07 16 10 C 0.15 2.74 6.37 -3.42 -0.02 2.72 16 11 C -0.11 -1.74 4.17 -88.36 -0.37 -2.11 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 13 C 0.11 1.65 4.76 -3.39 -0.02 1.64 16 14 N -0.61 -9.76 3.22 -172.29 -0.56 -10.32 16 15 C 0.53 8.55 6.65 -10.99 -0.07 8.48 16 16 O -0.54 -10.25 14.05 5.56 0.08 -10.17 16 17 C -0.13 -1.69 1.98 -91.50 -0.18 -1.87 16 18 H 0.09 1.04 7.89 -51.93 -0.41 0.64 16 19 C 0.06 0.80 4.54 -3.75 -0.02 0.78 16 20 N -0.53 -6.63 5.22 -234.29 -1.22 -7.85 16 21 C 0.05 0.51 6.09 -3.73 -0.02 0.49 16 22 C -0.15 -1.41 5.75 -26.47 -0.15 -1.56 16 23 C -0.07 -0.78 2.60 -90.02 -0.23 -1.01 16 24 C -0.16 -2.06 5.43 -26.46 -0.14 -2.21 16 25 C 0.05 0.65 6.09 -3.73 -0.02 0.63 16 26 C 0.12 2.08 6.24 -3.57 -0.02 2.06 16 27 C -0.12 -2.16 4.02 -88.60 -0.36 -2.52 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 C 0.18 4.26 4.76 -3.55 -0.02 4.24 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.04 0.68 7.95 -51.93 -0.41 0.27 16 33 H 0.08 1.40 6.74 -51.93 -0.35 1.05 16 34 H 0.06 0.76 7.62 -51.93 -0.40 0.36 16 35 H 0.09 1.38 6.44 -51.93 -0.33 1.05 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.03 8.11 -51.92 -0.42 0.61 16 42 H 0.09 1.51 5.59 -51.93 -0.29 1.22 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.39 7.44 -51.93 -0.39 1.00 16 48 H 0.05 1.34 6.51 -51.93 -0.34 1.00 16 49 H 0.04 1.14 7.46 -51.93 -0.39 0.76 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -30.52 357.74 -11.59 -42.10 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.34 Total: 1.94 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -1.90 Total: 3.17 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -1.79 Total: -59.20 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.52 -11.59 -42.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048823613.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.816 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds