Wall clock time and date at job start Tue Mar 31 2020 12:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35239 * 126.06773 * 2 1 4 4 C 1.40415 * 107.86501 * 179.97438 * 3 2 1 5 5 N 1.40158 * 125.97133 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99954 * 0.02562 * 5 4 3 7 7 O 1.21298 * 120.00334 * 355.15348 * 6 5 4 8 8 C 1.50702 * 120.00093 * 175.16000 * 6 5 4 9 9 C 1.52998 * 112.85189 * 65.15855 * 8 6 5 10 10 C 1.52999 * 109.46850 * 49.83298 * 9 8 6 11 11 C 1.53000 * 109.46772 * 186.62377 * 10 9 8 12 12 C 1.53002 * 109.47102 * 66.62893 * 10 9 8 13 13 C 1.53779 * 113.69212 * 196.43240 * 8 6 5 14 14 C 1.53780 * 87.08534 * 89.12304 * 13 8 6 15 15 C 1.53781 * 113.61347 * 293.96455 * 8 6 5 16 16 N 1.31217 * 108.05257 * 0.22730 * 4 3 2 17 17 N 1.34970 * 126.06858 * 179.97438 * 2 1 3 18 18 C 1.46495 * 125.97648 * 0.04615 * 17 2 1 19 19 C 1.50696 * 109.47389 * 90.00105 * 18 17 2 20 20 H 1.07996 * 120.00066 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00075 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00122 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00059 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46928 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47263 * 119.99074 * 23 21 19 26 26 H 1.48500 * 109.47065 * 239.99605 * 23 21 19 27 27 H 1.09004 * 109.46902 * 90.02662 * 1 2 3 28 28 H 1.08994 * 109.47100 * 210.02294 * 1 2 3 29 29 H 1.09000 * 109.46966 * 330.02687 * 1 2 3 30 30 H 1.07994 * 126.07043 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00227 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47044 * 289.83610 * 9 8 6 33 33 H 1.09001 * 109.47249 * 169.83412 * 9 8 6 34 34 H 1.08997 * 109.47581 * 306.62474 * 10 9 8 35 35 H 1.08997 * 109.47360 * 60.00722 * 11 10 9 36 36 H 1.09001 * 109.46707 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.47624 * 299.99802 * 11 10 9 38 38 H 1.09001 * 109.47309 * 179.97438 * 12 10 9 39 39 H 1.09007 * 109.46645 * 299.99723 * 12 10 9 40 40 H 1.08997 * 109.47245 * 59.99375 * 12 10 9 41 41 H 1.09001 * 113.61764 * 203.67496 * 13 8 6 42 42 H 1.09007 * 113.61479 * 334.57452 * 13 8 6 43 43 H 1.08999 * 113.61815 * 270.88691 * 14 13 8 44 44 H 1.09001 * 113.68940 * 139.98810 * 14 13 8 45 45 H 1.09008 * 113.61442 * 25.34756 * 15 8 6 46 46 H 1.09002 * 113.61937 * 156.24772 * 15 8 6 47 47 H 1.09001 * 109.46964 * 210.00278 * 18 17 2 48 48 H 1.09001 * 109.47300 * 329.99532 * 18 17 2 49 49 H 0.97004 * 120.00204 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6545 0.0006 5 7 4.7735 1.4749 0.0003 6 6 4.6367 2.8157 -0.0001 7 8 3.5339 3.3128 -0.0890 8 6 5.8540 3.6974 0.1096 9 6 6.7869 3.5752 -1.0968 10 6 5.9764 3.7275 -2.3856 11 6 6.8756 3.4421 -3.5901 12 6 5.4338 5.1548 -2.4811 13 6 5.5314 5.1509 0.4943 14 6 5.6549 4.7073 1.9615 15 6 6.5775 3.5830 1.4618 16 7 3.6337 -0.6576 -0.0040 17 7 2.3017 -1.0910 0.0005 18 6 1.8501 -2.4846 0.0002 19 6 1.6962 -2.9625 -1.4207 20 1 1.9126 -2.2948 -2.2414 21 6 1.2779 -4.2518 -1.6729 22 7 1.0138 -5.0648 -0.6735 23 14 1.0865 -4.8440 -3.4342 24 1 1.4426 -3.7451 -4.3674 25 1 1.9854 -6.0027 -3.6674 26 1 -0.3213 -5.2546 -3.6681 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 1.9720 2.1211 -0.0004 31 1 5.6585 1.0777 0.0011 32 1 7.2702 2.5984 -1.0849 33 1 7.5455 4.3565 -1.0502 34 1 5.1452 3.0225 -2.3776 35 1 7.2622 2.4253 -3.5222 36 1 6.2984 3.5510 -4.5083 37 1 7.7069 4.1471 -3.5983 38 1 4.8568 5.2635 -3.3995 39 1 4.7932 5.3581 -1.6229 40 1 6.2650 5.8598 -2.4891 41 1 6.2969 5.8639 0.1878 42 1 4.5249 5.4633 0.2158 43 1 4.7192 4.3468 2.3889 44 1 6.1585 5.4348 2.5981 45 1 6.4154 2.6294 1.9645 46 1 7.6290 3.8672 1.4199 47 1 2.5844 -3.1046 0.5145 48 1 0.8911 -2.5559 0.5134 49 1 0.7199 -5.9721 -0.8509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271165708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:50 Heat of formation + Delta-G solvation = 40.322622 kcal Electronic energy + Delta-G solvation = -27650.633871 eV Core-core repulsion = 24000.443944 eV Total energy + Delta-G solvation = -3650.189927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25952 -40.26175 -37.69879 -35.73293 -34.80085 -33.36530 -31.46204 -30.85585 -29.06649 -27.50841 -26.73475 -26.34000 -25.59559 -24.49643 -23.04685 -22.18082 -20.27549 -19.81469 -19.72497 -18.36035 -16.71326 -16.49944 -16.29054 -15.99540 -15.43160 -15.09458 -14.80621 -14.56611 -14.26276 -14.02579 -13.79141 -13.67042 -13.04560 -12.79926 -12.57800 -12.51524 -12.48808 -12.27780 -12.19479 -12.16630 -11.92832 -11.66839 -11.55719 -11.40469 -11.16157 -11.03942 -10.86039 -10.84716 -10.72043 -10.41568 -10.38719 -10.24826 -10.09713 -9.88493 -9.51612 -9.45413 -8.65074 -7.92776 -7.44466 -6.25956 -4.33381 2.34819 2.78912 2.91765 3.19867 3.27787 3.34090 3.72156 3.85095 4.14968 4.29423 4.32465 4.49336 4.60281 4.74262 4.80154 4.92502 5.06891 5.08021 5.30944 5.43441 5.45475 5.47123 5.50739 5.57349 5.58905 5.67526 5.71745 5.71925 5.77949 5.80390 5.91672 5.92989 6.00555 6.08706 6.10699 6.16706 6.23740 6.26842 6.29769 6.44854 6.56120 6.74034 6.93215 7.05281 7.47241 7.66408 7.68234 7.88687 8.05486 8.30543 8.66112 8.75479 9.33010 10.81331 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.003194 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.087755 B = 8763.678291 C = 9529.415996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.291 4.291 4 C 0.264 3.736 5 N -0.629 5.629 6 C 0.548 3.452 7 O -0.512 6.512 8 C -0.102 4.102 9 C -0.095 4.095 10 C -0.102 4.102 11 C -0.146 4.146 12 C -0.153 4.153 13 C -0.113 4.113 14 C -0.145 4.145 15 C -0.128 4.128 16 N -0.321 5.321 17 N -0.317 5.317 18 C 0.258 3.742 19 C -0.534 4.534 20 H 0.065 0.935 21 C 0.065 3.935 22 N -0.892 5.892 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.280 1.280 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.409 0.591 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.580 19.534 1.923 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.322 4.322 4 C 0.012 3.988 5 N -0.276 5.276 6 C 0.333 3.667 7 O -0.386 6.386 8 C -0.106 4.106 9 C -0.133 4.133 10 C -0.120 4.120 11 C -0.203 4.203 12 C -0.210 4.210 13 C -0.151 4.151 14 C -0.182 4.182 15 C -0.165 4.165 16 N -0.152 5.152 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.573 4.573 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.176 0.824 31 H 0.244 0.756 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.111 0.889 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.409 18.540 1.920 21.349 hybrid contribution -0.030 -0.211 -1.012 1.035 sum 10.379 18.329 0.908 21.083 Atomic orbital electron populations 1.20331 0.87920 1.02789 1.03167 1.21061 0.94889 0.87199 1.00895 1.21217 0.89748 0.99714 1.21488 1.19008 0.87255 0.89586 1.02983 1.42446 1.07399 1.05087 1.72664 1.19830 0.90197 0.81121 0.75503 1.90631 1.26661 1.73820 1.47451 1.21986 0.94333 0.97235 0.97020 1.21630 0.96822 1.02675 0.92165 1.21159 0.98255 0.98307 0.94289 1.21826 0.99395 1.01399 0.97714 1.22002 1.00899 0.95531 1.02534 1.22950 1.03264 0.93495 0.95385 1.22891 1.00137 0.98286 0.96919 1.23016 0.99343 1.00158 0.94021 1.77258 0.99894 1.08546 1.29452 1.48981 1.00987 1.07751 1.52180 1.19686 0.95956 0.71352 0.98949 1.21357 1.46607 0.97949 0.91393 0.91724 1.24927 0.94683 0.96079 0.98109 1.69930 1.45032 1.07070 1.30954 0.86310 0.77880 0.78805 0.83754 1.19586 1.20644 1.20625 0.90433 0.90865 0.90856 0.82443 0.75617 0.91287 0.90523 0.91081 0.92658 0.92673 0.92805 0.93073 0.91204 0.93040 0.89303 0.89592 0.89926 0.91095 0.90920 0.88929 0.93028 0.92813 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.01 0.36 -1.08 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -6.02 9.52 -39.83 -0.38 -6.40 16 4 C 0.26 5.40 8.11 -154.39 -1.25 4.15 16 5 N -0.63 -9.89 5.45 -11.13 -0.06 -9.95 16 6 C 0.55 7.85 4.82 -10.99 -0.05 7.79 16 7 O -0.51 -8.87 13.10 5.54 0.07 -8.79 16 8 C -0.10 -1.02 0.68 -154.85 -0.11 -1.13 16 9 C -0.10 -0.83 4.30 -26.73 -0.11 -0.94 16 10 C -0.10 -1.05 2.69 -90.62 -0.24 -1.29 16 11 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 12 C -0.15 -1.48 8.60 37.16 0.32 -1.16 16 13 C -0.11 -1.03 5.02 -25.92 -0.13 -1.16 16 14 C -0.14 -1.29 7.81 -25.92 -0.20 -1.49 16 15 C -0.13 -1.07 7.22 -25.92 -0.19 -1.26 16 16 N -0.32 -7.45 12.59 31.44 0.40 -7.06 16 17 N -0.32 -7.56 3.59 -58.33 -0.21 -7.77 16 18 C 0.26 6.66 5.99 -5.20 -0.03 6.63 16 19 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 20 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 23 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.27 7.07 -51.93 -0.37 0.90 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.16 3.17 5.93 -52.49 -0.31 2.86 16 31 H 0.41 5.41 8.83 -40.82 -0.36 5.05 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.53 7.96 -51.93 -0.41 0.12 16 34 H 0.07 0.96 6.89 -51.93 -0.36 0.60 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.74 5.08 -51.93 -0.26 0.47 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.63 7.98 -51.93 -0.41 0.21 16 42 H 0.09 0.93 6.34 -51.92 -0.33 0.60 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.66 8.09 -51.92 -0.42 0.24 16 46 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 47 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 48 H 0.05 1.37 7.04 -51.93 -0.37 1.00 16 49 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -31.43 389.69 -9.10 -40.53 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.22 Total: 5.77 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -2.66 Total: -10.40 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.86 Total: -49.14 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.43 -9.10 -40.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271165708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.851 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds