Wall clock time and date at job start Tue Mar 31 2020 12:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35239 * 126.06773 * 2 1 4 4 C 1.40415 * 107.86501 * 179.97438 * 3 2 1 5 5 N 1.40158 * 125.97133 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99954 * 0.02562 * 5 4 3 7 7 O 1.21298 * 120.00334 * 355.15348 * 6 5 4 8 8 C 1.50702 * 120.00093 * 175.16000 * 6 5 4 9 9 C 1.52998 * 112.85189 * 65.15855 * 8 6 5 10 10 C 1.52999 * 109.46850 * 49.83298 * 9 8 6 11 11 C 1.53000 * 109.46772 * 186.62377 * 10 9 8 12 12 C 1.53002 * 109.47102 * 66.62893 * 10 9 8 13 13 C 1.53779 * 113.69212 * 196.43240 * 8 6 5 14 14 C 1.53780 * 87.08534 * 89.12304 * 13 8 6 15 15 C 1.53781 * 113.61347 * 293.96455 * 8 6 5 16 16 N 1.31217 * 108.05257 * 0.22730 * 4 3 2 17 17 N 1.34970 * 126.06858 * 179.97438 * 2 1 3 18 18 C 1.46495 * 125.97648 * 0.04615 * 17 2 1 19 19 C 1.50696 * 109.47389 * 90.00105 * 18 17 2 20 20 H 1.07996 * 120.00066 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00075 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00122 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00059 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46928 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47263 * 119.99074 * 23 21 19 26 26 H 1.48500 * 109.47065 * 239.99605 * 23 21 19 27 27 H 1.09004 * 109.46902 * 90.02662 * 1 2 3 28 28 H 1.08994 * 109.47100 * 210.02294 * 1 2 3 29 29 H 1.09000 * 109.46966 * 330.02687 * 1 2 3 30 30 H 1.07994 * 126.07043 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00227 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47044 * 289.83610 * 9 8 6 33 33 H 1.09001 * 109.47249 * 169.83412 * 9 8 6 34 34 H 1.08997 * 109.47581 * 306.62474 * 10 9 8 35 35 H 1.08997 * 109.47360 * 60.00722 * 11 10 9 36 36 H 1.09001 * 109.46707 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.47624 * 299.99802 * 11 10 9 38 38 H 1.09001 * 109.47309 * 179.97438 * 12 10 9 39 39 H 1.09007 * 109.46645 * 299.99723 * 12 10 9 40 40 H 1.08997 * 109.47245 * 59.99375 * 12 10 9 41 41 H 1.09001 * 113.61764 * 203.67496 * 13 8 6 42 42 H 1.09007 * 113.61479 * 334.57452 * 13 8 6 43 43 H 1.08999 * 113.61815 * 270.88691 * 14 13 8 44 44 H 1.09001 * 113.68940 * 139.98810 * 14 13 8 45 45 H 1.09008 * 113.61442 * 25.34756 * 15 8 6 46 46 H 1.09002 * 113.61937 * 156.24772 * 15 8 6 47 47 H 1.09001 * 109.46964 * 210.00278 * 18 17 2 48 48 H 1.09001 * 109.47300 * 329.99532 * 18 17 2 49 49 H 0.97004 * 120.00204 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6545 0.0006 5 7 4.7735 1.4749 0.0003 6 6 4.6367 2.8157 -0.0001 7 8 3.5339 3.3128 -0.0890 8 6 5.8540 3.6974 0.1096 9 6 6.7869 3.5752 -1.0968 10 6 5.9764 3.7275 -2.3856 11 6 6.8756 3.4421 -3.5901 12 6 5.4338 5.1548 -2.4811 13 6 5.5314 5.1509 0.4943 14 6 5.6549 4.7073 1.9615 15 6 6.5775 3.5830 1.4618 16 7 3.6337 -0.6576 -0.0040 17 7 2.3017 -1.0910 0.0005 18 6 1.8501 -2.4846 0.0002 19 6 1.6962 -2.9625 -1.4207 20 1 1.9126 -2.2948 -2.2414 21 6 1.2779 -4.2518 -1.6729 22 7 1.0138 -5.0648 -0.6735 23 14 1.0865 -4.8440 -3.4342 24 1 1.4426 -3.7451 -4.3674 25 1 1.9854 -6.0027 -3.6674 26 1 -0.3213 -5.2546 -3.6681 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 1.9720 2.1211 -0.0004 31 1 5.6585 1.0777 0.0011 32 1 7.2702 2.5984 -1.0849 33 1 7.5455 4.3565 -1.0502 34 1 5.1452 3.0225 -2.3776 35 1 7.2622 2.4253 -3.5222 36 1 6.2984 3.5510 -4.5083 37 1 7.7069 4.1471 -3.5983 38 1 4.8568 5.2635 -3.3995 39 1 4.7932 5.3581 -1.6229 40 1 6.2650 5.8598 -2.4891 41 1 6.2969 5.8639 0.1878 42 1 4.5249 5.4633 0.2158 43 1 4.7192 4.3468 2.3889 44 1 6.1585 5.4348 2.5981 45 1 6.4154 2.6294 1.9645 46 1 7.6290 3.8672 1.4199 47 1 2.5844 -3.1046 0.5145 48 1 0.8911 -2.5559 0.5134 49 1 0.7199 -5.9721 -0.8509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271165708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:49 Heat of formation + Delta-G solvation = 23.085975 kcal Electronic energy + Delta-G solvation = -27651.381309 eV Core-core repulsion = 24000.443944 eV Total energy + Delta-G solvation = -3650.937365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.51629 -41.65618 -38.80006 -36.52610 -36.28084 -35.31115 -33.07625 -32.66459 -29.92557 -28.59354 -28.23685 -27.90572 -26.30395 -25.73348 -24.62729 -23.32548 -21.59453 -21.26620 -20.66406 -19.64560 -18.81558 -17.75471 -17.49376 -17.14953 -16.96451 -16.36353 -16.18232 -15.87570 -15.62546 -15.10383 -14.87390 -14.70119 -14.55695 -14.31976 -13.84197 -13.74619 -13.63264 -13.46891 -13.27261 -13.19044 -13.15156 -12.88812 -12.87864 -12.69626 -12.67771 -12.30308 -12.28290 -12.09893 -11.89189 -11.60272 -11.55121 -11.48954 -11.35533 -11.11553 -10.86411 -10.76219 -10.68942 -9.61291 -9.16320 -8.34903 -6.52569 0.89553 1.32548 1.35138 1.37386 1.40846 1.50670 2.18657 2.26767 2.38518 2.94717 3.38026 3.46399 3.63549 3.80446 3.90134 3.98058 4.04226 4.13249 4.16627 4.34445 4.41390 4.58072 4.68000 4.73526 4.77240 4.78849 4.85668 4.85989 4.87680 4.88280 4.94786 4.97548 5.00264 5.02653 5.06482 5.09396 5.12399 5.19373 5.22932 5.28454 5.35232 5.46726 5.48107 5.51802 5.53750 5.78771 5.92302 6.23292 6.26265 6.59781 6.98381 7.11127 7.18483 8.71324 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.003194 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.087755 B = 8763.678291 C = 9529.415996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.300 4.300 4 C 0.273 3.727 5 N -0.624 5.624 6 C 0.547 3.453 7 O -0.544 6.544 8 C -0.101 4.101 9 C -0.091 4.091 10 C -0.103 4.103 11 C -0.143 4.143 12 C -0.150 4.150 13 C -0.108 4.108 14 C -0.148 4.148 15 C -0.117 4.117 16 N -0.358 5.358 17 N -0.342 5.342 18 C 0.275 3.725 19 C -0.553 4.553 20 H 0.047 0.953 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.971 3.029 24 H -0.275 1.275 25 H -0.273 1.273 26 H -0.266 1.266 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.164 0.836 31 H 0.420 0.580 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.029 0.971 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.121 0.879 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.127 0.873 47 H 0.025 0.975 48 H 0.052 0.948 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.344 21.336 1.394 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.331 4.331 4 C 0.019 3.981 5 N -0.273 5.273 6 C 0.335 3.665 7 O -0.419 6.419 8 C -0.104 4.104 9 C -0.128 4.128 10 C -0.122 4.122 11 C -0.201 4.201 12 C -0.207 4.207 13 C -0.145 4.145 14 C -0.185 4.185 15 C -0.155 4.155 16 N -0.189 5.189 17 N -0.124 5.124 18 C 0.156 3.844 19 C -0.591 4.591 20 H 0.066 0.934 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.795 3.205 24 H -0.200 1.200 25 H -0.198 1.198 26 H -0.191 1.191 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.181 0.819 31 H 0.258 0.742 32 H 0.093 0.907 33 H 0.128 0.872 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.139 0.861 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.145 0.855 47 H 0.043 0.957 48 H 0.070 0.930 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.190 20.360 1.404 23.772 hybrid contribution -0.571 -0.660 -0.821 1.198 sum 11.619 19.700 0.583 22.879 Atomic orbital electron populations 1.20468 0.85336 1.04241 1.03920 1.21743 0.96660 0.86492 0.99441 1.21392 0.90028 0.99786 1.21923 1.19370 0.88873 0.89245 1.00577 1.42659 1.06651 1.05334 1.72669 1.20813 0.91454 0.80593 0.73653 1.90600 1.28564 1.74156 1.48620 1.22022 0.92678 0.96798 0.98934 1.21683 0.96665 1.04342 0.90129 1.21143 0.97464 0.97614 0.95979 1.21806 0.99693 1.01850 0.96726 1.21984 1.01511 0.95705 1.01521 1.23018 1.03042 0.93157 0.95285 1.22877 0.99345 0.99099 0.97198 1.23087 1.00875 0.99541 0.91972 1.77176 1.00031 1.09992 1.31700 1.48783 1.01755 1.07498 1.54377 1.19252 0.94930 0.72377 0.97810 1.21444 1.47560 0.98399 0.91706 0.93442 1.25723 0.93897 0.95887 1.02239 1.70006 1.45058 1.07554 1.32915 0.85309 0.78560 0.78078 0.78526 1.20013 1.19832 1.19086 0.89877 0.91153 0.87611 0.81863 0.74248 0.90657 0.87188 0.95235 0.93017 0.93544 0.90512 0.94111 0.92325 0.90437 0.86124 0.91883 0.92716 0.88753 0.91955 0.85483 0.95728 0.92977 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.82 10.11 71.24 0.72 -2.10 16 2 C 0.09 3.80 6.92 41.39 0.29 4.08 16 3 C -0.30 -12.77 9.52 22.11 0.21 -12.56 16 4 C 0.27 11.53 8.11 133.33 1.08 12.61 16 5 N -0.62 -19.94 5.45 -307.50 -1.67 -21.62 16 6 C 0.55 15.69 4.82 87.66 0.42 16.12 16 7 O -0.54 -19.31 13.10 -3.09 -0.04 -19.35 16 8 C -0.10 -1.82 0.68 -52.40 -0.04 -1.86 16 9 C -0.09 -1.31 4.30 30.59 0.13 -1.18 16 10 C -0.10 -2.00 2.69 -10.79 -0.03 -2.03 16 11 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16 12 C -0.15 -2.67 8.60 71.98 0.62 -2.05 16 13 C -0.11 -1.69 5.02 31.12 0.16 -1.54 16 14 C -0.15 -2.31 7.81 31.12 0.24 -2.06 16 15 C -0.12 -1.63 7.22 31.12 0.22 -1.40 16 16 N -0.36 -17.33 12.59 -54.45 -0.69 -18.01 16 17 N -0.34 -16.98 3.59 -338.46 -1.22 -18.20 16 18 C 0.28 14.82 5.99 85.63 0.51 15.33 16 19 C -0.55 -31.52 9.39 25.60 0.24 -31.28 16 20 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 21 C 0.02 1.30 5.46 84.65 0.46 1.77 16 22 N -0.92 -52.11 13.29 21.45 0.28 -51.83 16 23 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 28 H 0.07 2.46 7.07 -2.39 -0.02 2.44 16 29 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.16 6.73 5.93 -2.91 -0.02 6.71 16 31 H 0.42 11.15 8.83 -92.71 -0.82 10.34 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 0.94 7.96 -2.39 -0.02 0.92 16 34 H 0.03 0.81 6.89 -2.39 -0.02 0.79 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 1.18 5.08 -2.38 -0.01 1.17 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.12 1.16 7.98 -2.39 -0.02 1.14 16 42 H 0.06 1.32 6.34 -2.38 -0.02 1.31 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.06 1.02 8.09 -2.38 -0.02 1.00 16 46 H 0.13 0.97 8.10 -2.39 -0.02 0.95 16 47 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 2.77 7.04 -2.39 -0.02 2.75 16 49 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -70.95 389.69 4.73 -66.22 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.12 Total: 27.10 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.91 Total: -9.88 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -3.29 Total: -109.66 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.04 Total: -19.35 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.95 4.73 -66.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271165708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.310 kcal (2) G-P(sol) polarization free energy of solvation -70.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds