Wall clock time and date at job start Tue Mar 31 2020 13:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47184 * 2 1 4 4 C 1.50698 * 109.47301 * 180.02562 * 3 2 1 5 5 N 1.34664 * 125.79990 * 264.97797 * 4 3 2 6 6 H 0.97002 * 124.84779 * 359.97438 * 5 4 3 7 7 C 1.36438 * 110.29822 * 180.02562 * 5 4 3 8 8 C 1.34487 * 108.85758 * 359.71064 * 7 5 4 9 9 C 1.36761 * 125.80295 * 84.99638 * 4 3 2 10 10 C 1.47263 * 126.94396 * 359.97438 * 9 4 3 11 11 O 1.21628 * 119.99952 * 359.97438 * 10 9 4 12 12 N 1.34778 * 119.99979 * 179.97438 * 10 9 4 13 13 C 1.46497 * 119.99541 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47709 * 35.00296 * 13 12 10 15 15 C 1.53007 * 109.47299 * 275.00094 * 13 12 10 16 16 C 1.53002 * 109.47066 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47392 * 59.99932 * 16 15 13 18 18 C 1.52996 * 109.47110 * 299.99736 * 17 16 15 19 19 C 1.53001 * 109.47186 * 60.00240 * 18 17 16 20 20 H 1.09001 * 109.47419 * 59.99741 * 19 18 17 21 21 N 1.46499 * 109.47474 * 180.02562 * 19 18 17 22 22 C 1.36939 * 119.99547 * 275.00102 * 21 19 18 23 23 H 1.07993 * 120.00716 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99459 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00154 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99635 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99668 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99848 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99841 * 26 24 22 30 30 H 1.09000 * 109.47140 * 59.99832 * 1 2 3 31 31 H 1.09003 * 109.47194 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47104 * 299.99537 * 1 2 3 33 33 H 1.09000 * 109.47104 * 240.00463 * 2 1 3 34 34 H 1.08998 * 109.47622 * 120.00352 * 2 1 3 35 35 H 1.09000 * 109.46722 * 60.00228 * 3 2 1 36 36 H 1.08998 * 109.47128 * 300.00655 * 3 2 1 37 37 H 1.08005 * 125.57593 * 180.02562 * 7 5 4 38 38 H 1.07998 * 126.84021 * 180.26265 * 8 7 5 39 39 H 0.96996 * 119.99803 * 359.97438 * 12 10 9 40 40 H 1.09007 * 109.46803 * 300.00257 * 15 13 12 41 41 H 1.08994 * 109.47233 * 60.00154 * 15 13 12 42 42 H 1.09002 * 109.47040 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.46645 * 299.99542 * 16 15 13 44 44 H 1.08994 * 109.47137 * 60.00036 * 17 16 15 45 45 H 1.08998 * 109.46868 * 179.97438 * 17 16 15 46 46 H 1.08994 * 109.47365 * 300.00160 * 18 17 16 47 47 H 1.09004 * 109.47092 * 180.02562 * 18 17 16 48 48 H 0.96998 * 120.00185 * 94.99485 * 21 19 18 49 49 H 0.96993 * 120.00007 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.3352 1.5381 1.0871 6 1 4.0141 1.6184 1.9989 7 6 5.6498 1.5068 0.7232 8 6 5.7279 1.3834 -0.6137 9 6 4.3466 1.3460 -1.1059 10 6 3.9092 1.2230 -2.5067 11 8 2.7228 1.1987 -2.7735 12 7 4.8236 1.1375 -3.4932 13 6 4.3884 1.0146 -4.8866 14 1 3.4760 1.5922 -5.0347 15 6 4.1185 -0.4566 -5.2088 16 6 3.6646 -0.5850 -6.6643 17 6 4.7611 -0.0532 -7.5893 18 6 5.0310 1.4179 -7.2672 19 6 5.4850 1.5464 -5.8117 20 1 6.3973 0.9686 -5.6633 21 7 5.7428 2.9551 -5.5031 22 6 6.9612 3.5079 -5.7945 23 1 7.7323 2.9054 -6.2514 24 6 7.2053 4.8429 -5.5025 25 7 6.2655 5.5773 -4.9460 26 14 8.8677 5.5968 -5.8993 27 1 9.7758 5.4337 -4.7356 28 1 8.6978 7.0420 -6.1957 29 1 9.4513 4.9143 -7.0820 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 6.4903 1.5658 1.3988 38 1 6.6284 1.3262 -1.2072 39 1 5.7698 1.1573 -3.2804 40 1 5.0310 -1.0343 -5.0608 41 1 3.3377 -0.8356 -4.5496 42 1 3.4719 -1.6331 -6.8937 43 1 2.7523 -0.0073 -6.8126 44 1 5.6734 -0.6309 -7.4409 45 1 4.4379 -0.1451 -8.6262 46 1 4.1187 1.9956 -7.4155 47 1 5.8119 1.7969 -7.9265 48 1 5.0504 3.4962 -5.0924 49 1 5.4025 5.1857 -4.7397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085305621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:12 Heat of formation + Delta-G solvation = -13.284259 kcal Electronic energy + Delta-G solvation = -27867.429411 eV Core-core repulsion = 24214.914915 eV Total energy + Delta-G solvation = -3652.514496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17920 -39.27881 -37.50770 -35.00015 -34.23941 -33.52599 -31.14244 -30.96788 -29.90980 -29.05566 -27.37769 -25.96321 -23.50925 -23.11888 -21.67708 -21.30880 -21.09478 -20.43658 -19.76766 -18.78046 -17.62985 -17.20273 -16.14956 -15.57740 -15.03956 -14.81077 -14.74219 -14.23118 -14.02083 -13.78480 -13.71683 -13.56389 -13.45348 -13.25430 -13.12895 -12.84219 -12.60587 -12.49871 -12.11824 -11.96938 -11.80156 -11.30181 -11.25460 -10.94334 -10.86346 -10.79053 -10.65229 -10.63857 -10.36541 -10.21021 -9.95966 -9.77184 -9.35558 -9.12350 -8.85206 -8.75191 -8.41483 -8.04806 -6.97810 -6.04282 -3.04285 1.96044 2.55807 3.16841 3.53105 3.57956 3.72076 3.85061 3.97016 4.68986 4.71829 4.92394 5.04655 5.06282 5.09793 5.17250 5.27959 5.32525 5.42415 5.45473 5.57439 5.62056 5.65176 5.72009 5.75153 5.81311 5.83259 5.90001 5.97001 5.98305 6.01600 6.02160 6.12930 6.15149 6.28413 6.33773 6.38074 6.47368 6.52098 6.55184 6.59012 6.86468 6.89489 6.98025 7.01695 7.18832 7.48558 7.85331 8.16708 8.81082 8.84385 9.27947 10.14660 10.30328 11.43741 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.004387 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.932771 B = 6380.963792 C = 8270.118300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.056 4.056 4 C 0.101 3.899 5 N -0.554 5.554 6 H 0.412 0.588 7 C -0.022 4.022 8 C -0.161 4.161 9 C -0.225 4.225 10 C 0.590 3.410 11 O -0.560 6.560 12 N -0.705 5.705 13 C 0.143 3.857 14 H 0.081 0.919 15 C -0.123 4.123 16 C -0.113 4.113 17 C -0.119 4.119 18 C -0.132 4.132 19 C 0.179 3.821 20 H 0.050 0.950 21 N -0.732 5.732 22 C -0.330 4.330 23 H 0.064 0.936 24 C -0.043 4.043 25 N -0.943 5.943 26 Si 1.080 2.920 27 H -0.297 1.297 28 H -0.289 1.289 29 H -0.296 1.296 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.167 0.833 38 H 0.145 0.855 39 H 0.402 0.598 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.368 0.632 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 -13.788 10.392 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.094 4.094 4 C -0.016 4.016 5 N -0.150 5.150 6 H 0.248 0.752 7 C -0.149 4.149 8 C -0.186 4.186 9 C -0.235 4.235 10 C 0.379 3.621 11 O -0.440 6.440 12 N -0.353 5.353 13 C 0.037 3.963 14 H 0.099 0.901 15 C -0.162 4.162 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.173 4.173 19 C 0.068 3.932 20 H 0.068 0.932 21 N -0.374 5.374 22 C -0.461 4.461 23 H 0.082 0.918 24 C -0.241 4.241 25 N -0.588 5.588 26 Si 0.912 3.088 27 H -0.225 1.225 28 H -0.215 1.215 29 H -0.223 1.223 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.184 0.816 38 H 0.163 0.837 39 H 0.236 0.764 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.201 0.799 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.617 -12.481 10.290 17.124 hybrid contribution -0.475 -1.099 0.551 1.318 sum -6.091 -13.580 10.841 18.414 Atomic orbital electron populations 1.21742 0.95583 1.01495 1.01859 1.21389 0.95737 0.95646 1.02084 1.20356 0.86834 0.98388 1.03860 1.20267 0.93253 1.02304 0.85790 1.41539 1.06242 1.58630 1.08562 0.75176 1.21662 0.85530 1.11127 0.96610 1.22107 0.96087 1.06636 0.93725 1.20213 0.93100 1.17656 0.92482 1.17312 0.85388 0.75439 0.84011 1.90690 1.16606 1.52441 1.84304 1.45686 1.09844 1.73755 1.06007 1.21244 0.99073 0.95437 0.80542 0.90079 1.21866 1.01172 0.96670 0.96474 1.21472 0.98818 1.00292 0.94571 1.21569 0.98329 0.97378 0.98409 1.22194 1.01432 0.94275 0.99402 1.20390 0.94471 0.87072 0.91233 0.93219 1.42411 1.14773 1.05876 1.74341 1.20023 0.91254 0.96432 1.38400 0.91847 1.25690 1.05465 0.93002 0.99966 1.70819 1.05179 1.37935 1.44843 0.83227 0.74178 0.75950 0.75451 1.22451 1.21530 1.22253 0.92134 0.92860 0.93150 0.90941 0.92993 0.91853 0.87741 0.81562 0.83715 0.76390 0.92163 0.91887 0.92440 0.92044 0.92405 0.92716 0.92664 0.91682 0.79884 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.11 -1.24 5.92 -26.73 -0.16 -1.40 16 3 C -0.06 -0.69 5.07 -27.88 -0.14 -0.83 16 4 C 0.10 1.38 6.43 -81.89 -0.53 0.86 16 5 N -0.55 -5.91 5.90 -9.11 -0.05 -5.96 16 6 H 0.41 2.91 8.96 -40.82 -0.37 2.54 16 7 C -0.02 -0.25 11.89 -16.83 -0.20 -0.45 16 8 C -0.16 -2.31 10.56 -37.50 -0.40 -2.70 16 9 C -0.22 -3.64 6.29 -103.35 -0.65 -4.29 16 10 C 0.59 10.83 7.77 -12.59 -0.10 10.74 16 11 O -0.56 -11.20 14.42 5.25 0.08 -11.12 16 12 N -0.70 -12.56 4.90 -54.93 -0.27 -12.83 16 13 C 0.14 2.56 1.98 -67.93 -0.13 2.42 16 14 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 15 C -0.12 -1.85 5.50 -26.73 -0.15 -2.00 16 16 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 17 C -0.12 -1.70 5.92 -26.74 -0.16 -1.86 16 18 C -0.13 -2.40 5.50 -26.73 -0.15 -2.54 16 19 C 0.18 3.54 2.29 -67.93 -0.16 3.38 16 20 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 21 N -0.73 -18.04 4.95 -53.42 -0.26 -18.31 16 22 C -0.33 -9.07 9.93 -15.06 -0.15 -9.22 16 23 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 25 N -0.94 -29.34 13.70 55.49 0.76 -28.58 16 26 Si 1.08 25.96 29.92 -169.99 -5.09 20.87 16 27 H -0.30 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.98 7.96 -51.93 -0.41 0.57 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.55 6.75 -51.93 -0.35 1.20 16 37 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.15 1.97 7.69 -52.49 -0.40 1.57 16 39 H 0.40 7.03 7.72 -40.82 -0.32 6.72 16 40 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.37 9.79 6.63 -40.82 -0.27 9.52 16 49 H 0.26 8.01 6.77 -40.82 -0.28 7.73 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -33.05 391.37 -10.22 -43.27 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -8.33 Total: 18.79 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.95 Total: -12.03 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: 0.17 Total: -65.67 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.09 Total: 20.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.05 -10.22 -43.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085305621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.985 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds