Wall clock time and date at job start Tue Mar 31 2020 12:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47018 * 2 1 4 4 C 1.53004 * 109.46986 * 120.00164 * 2 1 3 5 5 C 1.52994 * 109.47109 * 64.99937 * 4 2 1 6 6 N 1.46497 * 109.47103 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00526 * 270.00632 * 6 5 4 8 8 C 1.50705 * 109.46725 * 273.87161 * 7 6 5 9 9 H 1.07998 * 119.99925 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99961 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99616 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99982 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47085 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47043 * 119.99520 * 12 10 8 15 15 H 1.48498 * 109.46773 * 239.99513 * 12 10 8 16 16 C 1.34784 * 119.99991 * 89.99667 * 6 5 4 17 17 O 1.21279 * 119.99531 * 5.11160 * 16 6 5 18 18 C 1.50691 * 120.00265 * 185.10372 * 16 6 5 19 19 H 1.09002 * 109.46753 * 32.94553 * 18 16 6 20 20 C 1.53109 * 109.46725 * 152.93089 * 18 16 6 21 21 C 1.53361 * 109.51204 * 190.28704 * 20 18 16 22 22 C 1.50839 * 108.37699 * 310.04687 * 21 20 18 23 23 C 1.39295 * 127.89885 * 196.70080 * 22 21 20 24 24 N 1.31065 * 108.08254 * 179.82471 * 23 22 21 25 25 N 1.40299 * 108.26864 * 359.97438 * 24 23 22 26 26 H 0.96996 * 126.09068 * 180.02562 * 25 24 23 27 27 C 1.34326 * 107.81340 * 0.06200 * 25 24 23 28 28 C 1.50824 * 128.03067 * 179.91648 * 27 25 24 29 29 H 1.09008 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47459 * 300.00022 * 1 2 3 31 31 H 1.09002 * 109.47144 * 60.00424 * 1 2 3 32 32 H 1.09005 * 109.46991 * 240.00031 * 2 1 3 33 33 H 1.08999 * 109.47103 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47323 * 299.99823 * 3 2 1 35 35 H 1.08996 * 109.47437 * 60.00276 * 3 2 1 36 36 H 1.08995 * 109.46881 * 304.99968 * 4 2 1 37 37 H 1.08994 * 109.46710 * 185.00203 * 4 2 1 38 38 H 1.09004 * 109.47037 * 60.00334 * 5 4 2 39 39 H 1.09001 * 109.47378 * 300.00104 * 5 4 2 40 40 H 1.09004 * 109.47064 * 33.86163 * 7 6 5 41 41 H 1.09000 * 109.47850 * 153.87285 * 7 6 5 42 42 H 0.97007 * 119.99722 * 180.02562 * 11 10 8 43 43 H 1.08994 * 109.46147 * 310.30289 * 20 18 16 44 44 H 1.09001 * 109.46298 * 70.27700 * 20 18 16 45 45 H 1.08995 * 109.68220 * 69.76900 * 21 20 18 46 46 H 1.09004 * 109.68218 * 190.32434 * 21 20 18 47 47 H 1.08004 * 125.95844 * 359.84503 * 23 22 21 48 48 H 1.09000 * 109.68837 * 76.79555 * 28 27 25 49 49 H 1.08999 * 109.68508 * 316.24389 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1879 6 7 2.1240 -2.8862 2.3838 7 6 3.4523 -3.5041 2.3814 8 6 3.3560 -4.8996 1.8206 9 1 2.4009 -5.2875 1.4986 10 6 4.4871 -5.6816 1.7195 11 7 5.6501 -5.2093 2.1120 12 14 4.3677 -7.4115 1.0250 13 1 2.9580 -7.7019 0.6595 14 1 5.2251 -7.5204 -0.1826 15 1 4.8250 -8.3875 2.0465 16 6 1.3517 -2.9531 3.4864 17 8 0.2179 -2.5236 3.4595 18 6 1.8971 -3.5617 4.7525 19 1 2.9657 -3.3583 4.8224 20 6 1.1816 -2.9519 5.9611 21 6 1.9020 -3.3717 7.2482 22 6 2.0955 -4.8673 7.2188 23 6 2.4027 -5.7114 8.2834 24 7 2.4774 -6.9363 7.8229 25 7 2.2175 -6.9045 6.4446 26 1 2.2063 -7.6689 5.8475 27 6 1.9878 -5.6270 6.0990 28 6 1.6648 -5.0778 4.7320 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6053 -0.2618 2.1369 37 1 3.1262 -0.6443 1.2952 38 1 2.0699 -2.6550 0.3002 39 1 0.5489 -2.2724 1.1420 40 1 4.1279 -2.9108 1.7652 41 1 3.8346 -3.5480 3.4012 42 1 6.4460 -5.7593 2.0406 43 1 1.1901 -1.8652 5.8779 44 1 0.1511 -3.3058 5.9897 45 1 2.8716 -2.8770 7.3043 46 1 1.2984 -3.0965 8.1132 47 1 2.5529 -5.4094 9.3094 48 1 0.6230 -5.2871 4.4889 49 1 2.3153 -5.5382 3.9883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080027607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:37 Heat of formation + Delta-G solvation = 2.209432 kcal Electronic energy + Delta-G solvation = -28077.546859 eV Core-core repulsion = 24425.704219 eV Total energy + Delta-G solvation = -3651.842639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25981 -39.41602 -36.79436 -35.53952 -34.79773 -32.63342 -32.26728 -30.04588 -28.87851 -28.70553 -27.05765 -26.99461 -24.20018 -23.15363 -22.98910 -21.77158 -21.21000 -19.77660 -18.75714 -18.03405 -17.07082 -16.60657 -16.30766 -15.48193 -15.07704 -14.80084 -14.52248 -14.37728 -14.06346 -13.87044 -13.58779 -13.38110 -13.11274 -13.00743 -12.74130 -12.50932 -12.38405 -12.20241 -12.05221 -11.71477 -11.57561 -11.45871 -11.31475 -11.03041 -11.00363 -10.92922 -10.73379 -10.51322 -10.40202 -10.37894 -10.29607 -10.22169 -10.03368 -9.74496 -9.24322 -8.99746 -8.61565 -8.00261 -7.73423 -6.27396 -4.34556 2.16310 3.01223 3.05832 3.11974 3.22652 3.24445 3.41022 3.86928 4.23785 4.87639 5.00455 5.04059 5.05176 5.11343 5.12542 5.16702 5.25169 5.45081 5.50309 5.64645 5.68015 5.71662 5.79643 5.82652 5.89159 5.90863 5.95196 5.99540 6.01685 6.09583 6.12023 6.19771 6.26701 6.32191 6.34498 6.38600 6.47628 6.58467 6.61644 6.66409 6.68235 6.78830 6.92663 7.15178 7.49956 7.54266 7.67595 7.91927 7.97337 8.31209 8.71299 8.97966 9.32785 10.78806 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.005040 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.470508 B = 5554.520873 C = 7783.605604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.127 4.127 5 C 0.118 3.882 6 N -0.593 5.593 7 C 0.233 3.767 8 C -0.537 4.537 9 H 0.062 0.938 10 C 0.067 3.933 11 N -0.886 5.886 12 Si 0.889 3.111 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.282 1.282 16 C 0.521 3.479 17 O -0.571 6.571 18 C -0.092 4.092 19 H 0.101 0.899 20 C -0.099 4.099 21 C -0.037 4.037 22 C -0.249 4.249 23 C 0.055 3.945 24 N -0.309 5.309 25 N -0.468 5.468 26 H 0.437 0.563 27 C 0.113 3.887 28 C -0.055 4.055 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.043 0.957 42 H 0.265 0.735 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.179 0.821 48 H 0.082 0.918 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 6.122 3.442 9.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.006 4.006 6 N -0.322 5.322 7 C 0.114 3.886 8 C -0.576 4.576 9 H 0.080 0.920 10 C -0.137 4.137 11 N -0.524 5.524 12 Si 0.716 3.284 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.208 1.208 16 C 0.309 3.691 17 O -0.452 6.452 18 C -0.113 4.113 19 H 0.119 0.881 20 C -0.137 4.137 21 C -0.075 4.075 22 C -0.261 4.261 23 C -0.130 4.130 24 N -0.131 5.131 25 N -0.175 5.175 26 H 0.281 0.719 27 C -0.018 4.018 28 C -0.094 4.094 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.196 0.804 48 H 0.100 0.900 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.948 5.069 3.748 8.668 hybrid contribution 0.226 -0.713 -0.973 1.227 sum -5.722 4.356 2.775 7.709 Atomic orbital electron populations 1.21874 0.95377 1.02052 1.01113 1.21049 0.95808 0.95897 0.98543 1.21821 1.00911 0.96213 1.01262 1.21985 1.01059 0.95971 0.97532 1.21352 0.99882 0.90939 0.88384 1.48242 1.19359 1.52975 1.11657 1.19505 0.77717 0.92792 0.98629 1.21495 0.94516 0.98679 1.42863 0.91968 1.24932 0.95166 0.98451 0.95143 1.69923 0.98874 1.37177 1.46380 0.86578 0.78418 0.84290 0.79078 1.19575 1.20713 1.20847 1.20334 0.85149 0.78668 0.84995 1.90586 1.18849 1.50769 1.84997 1.21196 1.02500 0.94551 0.93093 0.88106 1.21437 0.99559 1.00320 0.92392 1.19962 1.00173 0.89782 0.97576 1.19892 1.16980 0.97129 0.92072 1.23496 0.99589 0.90139 0.99789 1.77407 1.25166 1.21665 0.88878 1.46010 1.56298 1.07465 1.07735 0.71908 1.21005 0.98532 0.85037 0.97237 1.20407 1.03247 0.94302 0.91434 0.92265 0.92785 0.93337 0.91206 0.92773 0.93084 0.92918 0.92105 0.91839 0.90634 0.90790 0.94801 0.93960 0.92505 0.91442 0.91216 0.91401 0.91253 0.80432 0.89970 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.95 37.16 0.33 -1.46 16 2 C -0.09 -1.19 2.92 -90.62 -0.26 -1.45 16 3 C -0.14 -1.61 9.19 37.15 0.34 -1.27 16 4 C -0.13 -1.93 5.01 -26.73 -0.13 -2.07 16 5 C 0.12 2.07 5.22 -4.05 -0.02 2.05 16 6 N -0.59 -11.66 2.46 -175.06 -0.43 -12.09 16 7 C 0.23 5.16 4.97 -5.19 -0.03 5.13 16 8 C -0.54 -12.89 7.66 -34.44 -0.26 -13.15 16 9 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 10 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -23.32 13.29 55.43 0.74 -22.58 16 12 Si 0.89 19.52 29.54 -169.99 -5.02 14.50 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 C 0.52 10.10 6.72 -10.99 -0.07 10.03 16 17 O -0.57 -12.07 15.86 5.56 0.09 -11.99 16 18 C -0.09 -1.58 1.76 -91.51 -0.16 -1.74 16 19 H 0.10 1.83 6.07 -51.93 -0.31 1.51 16 20 C -0.10 -1.48 4.62 -26.49 -0.12 -1.60 16 21 C -0.04 -0.48 6.28 -27.63 -0.17 -0.66 16 22 C -0.25 -3.81 5.91 -105.05 -0.62 -4.43 16 23 C 0.06 0.80 12.00 -17.49 -0.21 0.59 16 24 N -0.31 -5.03 12.71 30.54 0.39 -4.64 16 25 N -0.47 -7.40 7.34 33.48 0.25 -7.15 16 26 H 0.44 5.93 8.96 -182.45 -1.64 4.30 16 27 C 0.11 1.84 7.08 -82.33 -0.58 1.26 16 28 C -0.05 -0.93 5.54 -27.62 -0.15 -1.09 16 29 H 0.06 0.77 6.57 -51.92 -0.34 0.43 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 39 H 0.07 1.33 5.78 -51.93 -0.30 1.03 16 40 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 41 H 0.04 0.97 5.64 -51.93 -0.29 0.68 16 42 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 43 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 44 H 0.07 1.09 8.11 -51.93 -0.42 0.66 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.18 1.94 8.06 -52.48 -0.42 1.52 16 48 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 49 H 0.12 2.24 6.19 -51.93 -0.32 1.92 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -28.20 387.11 -9.89 -38.09 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -9.50 Total: 8.31 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.23 Total: -8.29 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.94 Total: -46.46 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.20 -9.89 -38.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080027607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.304 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds