Wall clock time and date at job start Tue Mar 31 2020 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 C 1.53002 * 109.46732 * 65.00035 * 3 2 1 5 5 C 1.53001 * 109.47004 * 186.20365 * 4 3 2 6 6 C 1.52994 * 109.46918 * 185.00157 * 3 2 1 7 7 N 1.46495 * 109.47302 * 63.30933 * 6 3 2 8 8 C 1.46508 * 119.99681 * 263.94474 * 7 6 3 9 9 C 1.50697 * 109.47131 * 269.99864 * 8 7 6 10 10 H 1.07999 * 120.00103 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99876 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99570 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99860 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47537 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46938 * 120.00571 * 13 11 9 16 16 H 1.48503 * 109.47117 * 240.00334 * 13 11 9 17 17 C 1.34772 * 120.00503 * 83.94819 * 7 6 3 18 18 O 1.21280 * 119.99591 * 355.08191 * 17 7 6 19 19 C 1.50697 * 120.00323 * 175.08476 * 17 7 6 20 20 C 1.52997 * 109.47231 * 179.97438 * 19 17 7 21 21 C 1.50697 * 109.47231 * 179.97438 * 20 19 17 22 22 C 1.38396 * 120.00500 * 124.99870 * 21 20 19 23 23 N 1.32121 * 119.99959 * 179.97438 * 22 21 20 24 24 C 1.32155 * 120.00174 * 359.97438 * 23 22 21 25 25 C 1.38346 * 120.00061 * 359.97438 * 24 23 22 26 26 N 1.32124 * 119.99843 * 304.71864 * 21 20 19 27 27 H 1.08998 * 109.46934 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46863 * 299.99782 * 1 2 3 29 29 H 1.08996 * 109.46960 * 59.99859 * 1 2 3 30 30 H 1.08997 * 109.46863 * 240.00218 * 2 1 3 31 31 H 1.09000 * 109.46662 * 120.00535 * 2 1 3 32 32 H 1.09001 * 109.47032 * 305.00537 * 3 2 1 33 33 H 1.09003 * 109.47191 * 306.20316 * 4 3 2 34 34 H 1.08995 * 109.47258 * 66.20734 * 4 3 2 35 35 H 1.08997 * 109.47401 * 303.82636 * 5 4 3 36 36 H 1.09006 * 109.47061 * 63.82053 * 5 4 3 37 37 H 1.08993 * 109.47396 * 183.81963 * 5 4 3 38 38 H 1.09003 * 109.47000 * 303.30254 * 6 3 2 39 39 H 1.09008 * 109.46714 * 183.30959 * 6 3 2 40 40 H 1.09003 * 109.46958 * 30.00469 * 8 7 6 41 41 H 1.08998 * 109.46671 * 149.99772 * 8 7 6 42 42 H 0.97005 * 119.99602 * 179.97438 * 12 11 9 43 43 H 1.09005 * 109.46992 * 299.99565 * 19 17 7 44 44 H 1.08994 * 109.47232 * 59.99729 * 19 17 7 45 45 H 1.09004 * 109.47236 * 300.00052 * 20 19 17 46 46 H 1.09003 * 109.47432 * 59.99760 * 20 19 17 47 47 H 1.08003 * 119.99614 * 359.95359 * 22 21 20 48 48 H 1.07997 * 120.00062 * 180.02562 * 24 23 22 49 49 H 1.07999 * 120.00087 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1264 1.3074 5 6 2.0083 3.6089 1.2441 6 6 3.5648 1.4442 -0.1258 7 7 3.9493 0.8605 -1.4132 8 6 4.3158 -0.5556 -1.4952 9 6 5.7985 -0.7046 -1.2706 10 1 6.4069 0.1682 -1.0850 11 6 6.3782 -1.9553 -1.3011 12 7 5.6371 -3.0180 -1.5267 13 14 8.2159 -2.1400 -1.0221 14 1 8.8185 -0.8025 -0.7910 15 1 8.4523 -3.0007 0.1647 16 1 8.8379 -2.7637 -2.2177 17 6 3.9660 1.6262 -2.5222 18 8 3.5778 2.7741 -2.4724 19 6 4.4669 1.0560 -3.8241 20 6 4.3796 2.1242 -4.9159 21 6 4.8812 1.5542 -6.2177 22 6 4.0799 1.5947 -7.3453 23 7 4.5199 1.0954 -8.4867 24 6 5.7253 0.5577 -8.5517 25 6 6.5267 0.5180 -7.4247 26 7 6.0881 1.0206 -6.2838 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6054 1.9815 -0.8418 33 1 0.5592 2.0283 1.4508 34 1 2.1572 1.6558 2.1405 35 1 3.0731 3.7070 1.0331 36 1 1.4352 4.0944 0.4542 37 1 1.7823 4.0816 2.1999 38 1 3.9968 0.8557 0.6836 39 1 3.9331 2.4685 -0.0667 40 1 3.7747 -1.1157 -0.7325 41 1 4.0571 -0.9413 -2.4813 42 1 6.0449 -3.8979 -1.5486 43 1 5.5034 0.7393 -3.7072 44 1 3.8547 0.1990 -4.1049 45 1 3.3431 2.4405 -5.0327 46 1 4.9916 2.9814 -4.6353 47 1 3.0948 2.0343 -7.2922 48 1 6.0851 0.1499 -9.4847 49 1 7.5117 0.0782 -7.4777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280633607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:05 Heat of formation + Delta-G solvation = -20.648181 kcal Electronic energy + Delta-G solvation = -27468.289884 eV Core-core repulsion = 23815.456064 eV Total energy + Delta-G solvation = -3652.833820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01838 -39.33231 -36.96786 -34.72865 -34.51483 -33.31731 -32.43372 -31.51062 -30.33965 -28.34477 -26.88243 -25.57158 -24.48776 -23.73654 -23.05266 -22.26121 -21.56603 -19.59863 -18.21974 -17.46392 -16.95591 -16.65586 -16.36524 -15.70052 -15.38347 -14.97480 -14.65591 -14.44935 -14.21605 -14.06643 -13.78014 -13.50214 -13.41902 -12.81737 -12.65499 -12.33724 -12.26541 -12.07702 -11.82087 -11.66461 -11.50180 -11.48134 -11.45097 -11.10890 -11.05796 -10.98475 -10.88722 -10.77149 -10.61650 -10.34681 -10.17711 -10.04942 -9.90215 -9.64336 -9.22296 -9.00480 -8.90601 -8.53639 -7.64739 -6.17358 -4.24080 0.81119 1.19372 3.22324 3.30904 3.34908 3.45982 3.71360 3.96818 4.13521 4.30806 4.34989 4.53814 4.83288 5.08177 5.15004 5.17800 5.17954 5.25329 5.29056 5.45977 5.50535 5.52850 5.59085 5.67324 5.68532 5.71485 5.91704 5.95533 6.03293 6.04353 6.11907 6.17956 6.26107 6.34298 6.35902 6.40575 6.41029 6.46523 6.60861 6.62937 6.69468 6.83138 6.86967 7.19656 7.32036 7.58096 7.77820 7.84946 8.07605 8.38173 8.81410 9.05580 9.44039 10.89168 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.008293 B = 0.004643 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3375.599466 B = 6029.027531 C = 8302.061766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.101 4.101 4 C -0.116 4.116 5 C -0.152 4.152 6 C 0.126 3.874 7 N -0.592 5.592 8 C 0.236 3.764 9 C -0.535 4.535 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.517 3.483 18 O -0.577 6.577 19 C -0.126 4.126 20 C -0.051 4.051 21 C 0.094 3.906 22 C 0.047 3.953 23 N -0.440 5.440 24 C 0.032 3.968 25 C 0.057 3.943 26 N -0.429 5.429 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.113 0.887 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.168 0.832 48 H 0.166 0.834 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 6.645 -4.825 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.120 4.120 4 C -0.154 4.154 5 C -0.209 4.209 6 C 0.003 3.997 7 N -0.321 5.321 8 C 0.116 3.884 9 C -0.573 4.573 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.306 3.694 18 O -0.460 6.460 19 C -0.166 4.166 20 C -0.090 4.090 21 C -0.046 4.046 22 C -0.113 4.113 23 N -0.154 5.154 24 C -0.128 4.128 25 C -0.103 4.103 26 N -0.144 5.144 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.131 0.869 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.185 0.815 48 H 0.183 0.817 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.183 7.003 -4.808 9.951 hybrid contribution 1.198 -0.593 0.109 1.341 sum -3.985 6.410 -4.700 8.891 Atomic orbital electron populations 1.21810 0.96727 1.00965 1.01172 1.21634 0.94921 0.96543 1.02818 1.21571 0.96628 0.96003 0.97821 1.21553 1.00838 0.95514 0.97522 1.21807 1.02128 0.96239 1.00735 1.21375 0.93319 0.98891 0.86130 1.48185 1.64504 1.12851 1.06586 1.19503 0.95741 0.74723 0.98429 1.21537 0.93099 0.93059 1.49638 0.92070 1.24921 0.98313 0.95676 0.94807 1.69932 1.35584 0.98506 1.48991 0.86496 0.85191 0.78289 0.77855 1.19633 1.20961 1.20852 1.20407 0.77620 0.85495 0.85917 1.90580 1.50287 1.18690 1.86404 1.21511 1.05414 0.98135 0.91528 1.20307 1.01874 0.98303 0.88476 1.22464 0.90585 0.94334 0.97232 1.23630 1.01110 0.97750 0.88798 1.68405 1.13957 1.06293 1.26744 1.23691 0.91083 0.97842 1.00162 1.23822 1.01244 0.96198 0.89017 1.68361 1.13715 1.05968 1.26355 0.93221 0.93027 0.93241 0.90982 0.92164 0.90944 0.92053 0.92182 0.92290 0.92903 0.93483 0.90636 0.91296 0.94165 0.94713 0.92672 0.86858 0.89645 0.89533 0.89067 0.81479 0.81672 0.81469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.68 37.16 0.36 -1.59 16 2 C -0.12 -1.88 4.71 -26.73 -0.13 -2.01 16 3 C -0.10 -1.57 2.02 -90.62 -0.18 -1.75 16 4 C -0.12 -1.52 5.28 -26.73 -0.14 -1.66 16 5 C -0.15 -1.92 9.77 37.16 0.36 -1.56 16 6 C 0.13 2.28 4.61 -4.05 -0.02 2.26 16 7 N -0.59 -11.99 2.14 -175.06 -0.37 -12.36 16 8 C 0.24 5.42 3.92 -5.19 -0.02 5.40 16 9 C -0.53 -13.67 9.15 -34.44 -0.32 -13.98 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 13 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.52 10.32 7.61 -10.99 -0.08 10.23 16 18 O -0.58 -12.14 15.54 5.56 0.09 -12.05 16 19 C -0.13 -2.27 4.23 -27.89 -0.12 -2.39 16 20 C -0.05 -0.77 4.92 -27.89 -0.14 -0.90 16 21 C 0.09 1.37 6.17 -82.41 -0.51 0.86 16 22 C 0.05 0.61 10.85 -17.37 -0.19 0.42 16 23 N -0.44 -5.82 10.50 -13.06 -0.14 -5.95 16 24 C 0.03 0.36 11.22 -17.37 -0.20 0.17 16 25 C 0.06 0.71 11.22 -17.37 -0.19 0.52 16 26 N -0.43 -6.68 10.06 -9.28 -0.09 -6.78 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.60 6.44 -51.93 -0.33 0.27 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.28 5.96 -51.93 -0.31 0.97 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.25 7.97 -51.93 -0.41 0.83 16 33 H 0.06 0.73 6.30 -51.93 -0.33 0.41 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.80 6.38 -51.93 -0.33 0.47 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 39 H 0.07 1.26 5.93 -51.92 -0.31 0.96 16 40 H 0.04 0.97 6.62 -51.93 -0.34 0.62 16 41 H 0.03 0.84 6.47 -51.93 -0.34 0.50 16 42 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.11 2.30 7.73 -51.93 -0.40 1.90 16 44 H 0.09 1.54 7.25 -51.93 -0.38 1.16 16 45 H 0.09 1.17 7.85 -51.93 -0.41 0.76 16 46 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 47 H 0.17 1.70 7.96 -52.48 -0.42 1.29 16 48 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 49 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -29.66 393.29 -8.55 -38.21 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.07 Total: 5.43 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.60 Total: -4.36 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.13 Total: -48.72 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.66 -8.55 -38.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280633607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.558 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds