Wall clock time and date at job start Tue Mar 31 2020 12:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46852 * 2 1 4 4 C 1.52996 * 109.47392 * 299.99639 * 3 2 1 5 5 C 1.53000 * 109.47072 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47170 * 59.99893 * 3 2 1 7 7 C 1.46500 * 119.99791 * 239.07831 * 6 3 2 8 8 C 1.50700 * 109.47131 * 269.99663 * 7 6 3 9 9 H 1.07999 * 119.99955 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00446 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99480 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00436 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46857 * 60.00269 * 12 10 8 14 14 H 1.48500 * 109.47048 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46923 * 300.00381 * 12 10 8 16 16 C 1.34780 * 120.00411 * 59.07980 * 6 3 2 17 17 O 1.21287 * 119.99269 * 5.28996 * 16 6 3 18 18 C 1.50694 * 120.00502 * 185.57219 * 16 6 3 19 19 H 1.09003 * 115.54543 * 29.33790 * 18 16 6 20 20 C 1.52998 * 117.50197 * 243.67396 * 18 16 6 21 21 C 1.52993 * 117.50257 * 175.00845 * 18 16 6 22 22 H 1.09000 * 117.49514 * 0.02562 * 21 18 16 23 23 C 1.50694 * 117.50449 * 214.97896 * 21 18 16 24 24 C 1.39873 * 126.03920 * 300.03087 * 23 21 18 25 25 N 1.30834 * 108.20475 * 179.97438 * 24 23 21 26 26 N 1.40084 * 108.20515 * 359.97438 * 25 24 23 27 27 C 1.46500 * 126.03884 * 180.02562 * 26 25 24 28 28 C 1.34952 * 107.92369 * 359.76426 * 26 25 24 29 29 H 1.08992 * 109.47446 * 300.00056 * 1 2 3 30 30 H 1.09004 * 109.46594 * 60.00324 * 1 2 3 31 31 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47010 * 239.99650 * 2 1 3 33 33 H 1.09004 * 109.46594 * 119.99676 * 2 1 3 34 34 H 1.08995 * 109.47394 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.47389 * 300.00643 * 4 3 2 36 36 H 1.09007 * 109.46856 * 60.00383 * 4 3 2 37 37 H 1.09000 * 109.47493 * 306.20378 * 5 3 2 38 38 H 1.09008 * 109.47123 * 66.19981 * 5 3 2 39 39 H 1.08998 * 109.47423 * 186.19720 * 5 3 2 40 40 H 1.08995 * 109.47293 * 29.99516 * 7 6 3 41 41 H 1.08999 * 109.47228 * 150.00439 * 7 6 3 42 42 H 0.97004 * 119.99498 * 179.97438 * 11 10 8 43 43 H 1.09008 * 117.49420 * 359.97438 * 20 18 16 44 44 H 1.08996 * 117.50191 * 145.01232 * 20 18 16 45 45 H 1.07998 * 125.89606 * 359.97438 * 24 23 21 46 46 H 1.09007 * 109.46877 * 89.98061 * 27 26 25 47 47 H 1.09000 * 109.47007 * 209.97505 * 27 26 25 48 48 H 1.08993 * 109.47171 * 329.98234 * 27 26 25 49 49 H 1.08006 * 126.12764 * 180.24377 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 3.5700 1.4425 0.0006 6 7 1.5516 2.1331 1.1962 7 6 0.7261 3.3358 1.0618 8 6 1.6137 4.5533 1.0290 9 1 2.6855 4.4422 1.1006 10 6 1.0575 5.8089 0.9064 11 7 -0.2478 5.9442 0.8187 12 14 2.1577 7.3179 0.8650 13 1 3.0857 7.2223 -0.2904 14 1 1.3209 8.5371 0.7289 15 1 2.9413 7.3939 2.1243 16 6 1.8618 1.6620 2.4203 17 8 2.6228 0.7245 2.5342 18 6 1.2582 2.2960 3.6469 19 1 0.2729 2.7414 3.5094 20 6 2.2107 2.9781 4.6310 21 6 1.5563 1.6440 4.9985 22 1 2.1894 0.7567 5.0005 23 6 0.4656 1.6671 6.0380 24 6 -0.1282 2.8106 6.5824 25 7 -1.0308 2.4291 7.4494 26 7 -1.0403 1.0287 7.4837 27 6 -1.9042 0.1930 8.3213 28 6 -0.1172 0.5854 6.6048 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.8930 3.1915 -1.2490 35 1 1.8934 1.6499 -2.1392 36 1 0.4400 2.1637 -1.2492 37 1 3.9331 0.8357 0.8301 38 1 3.9338 1.0277 -0.9395 39 1 3.9333 2.4642 0.1116 40 1 0.1511 3.2805 0.1375 41 1 0.0449 3.4057 1.9099 42 1 -0.6391 6.8276 0.7328 43 1 3.2740 2.9679 4.3912 44 1 1.8519 3.8720 5.1411 45 1 0.1161 3.8320 6.3306 46 1 -2.8272 -0.0274 7.7849 47 1 -1.3899 -0.7386 8.5575 48 1 -2.1382 0.7231 9.2444 49 1 0.1165 -0.4477 6.3936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364980047.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:11 Heat of formation + Delta-G solvation = 66.669913 kcal Electronic energy + Delta-G solvation = -28204.307245 eV Core-core repulsion = 24555.259822 eV Total energy + Delta-G solvation = -3649.047423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14027 -39.74125 -37.19060 -35.39760 -33.57541 -32.91783 -31.88369 -30.06652 -29.80766 -27.67191 -26.78970 -26.18975 -23.95073 -23.10436 -22.63312 -22.32570 -20.89446 -19.96410 -19.25039 -17.54807 -16.82236 -16.50591 -16.05440 -15.45821 -15.34610 -14.57189 -14.46815 -14.30813 -14.13326 -14.05310 -13.47497 -13.15706 -12.83462 -12.81254 -12.61965 -12.43508 -12.29299 -12.06558 -11.75116 -11.68089 -11.46242 -11.39994 -11.12891 -11.06917 -10.98093 -10.69209 -10.61220 -10.43053 -10.29043 -10.20680 -10.14765 -9.94099 -9.81183 -9.55993 -9.32984 -8.74507 -8.42914 -8.02959 -7.54660 -6.10346 -4.15719 1.94511 2.56700 2.82102 3.28044 3.33305 3.34498 3.42836 3.94631 4.38303 4.44406 4.64690 4.92398 4.99922 5.08295 5.21811 5.23374 5.26933 5.37205 5.42089 5.47696 5.54185 5.60997 5.67912 5.77542 5.81281 5.90501 6.05205 6.10466 6.20555 6.23542 6.27050 6.30553 6.33416 6.50951 6.53992 6.56606 6.63837 6.66876 6.71473 6.76021 6.93636 7.00394 7.05572 7.05829 7.34062 7.71094 7.78161 7.85904 8.16804 8.49486 8.89888 9.16875 9.50866 10.96168 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.010243 B = 0.004687 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.918188 B = 5972.723204 C = 7634.190595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.181 3.819 4 C -0.151 4.151 5 C -0.158 4.158 6 N -0.580 5.580 7 C 0.233 3.767 8 C -0.525 4.525 9 H 0.058 0.942 10 C 0.066 3.934 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.549 3.451 17 O -0.574 6.574 18 C -0.159 4.159 19 H 0.123 0.877 20 C -0.133 4.133 21 C -0.058 4.058 22 H 0.117 0.883 23 C -0.193 4.193 24 C 0.058 3.942 25 N -0.301 5.301 26 N -0.383 5.383 27 C 0.105 3.895 28 C 0.056 3.944 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.184 0.816 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 -11.148 7.315 13.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.096 3.904 4 C -0.208 4.208 5 C -0.216 4.216 6 N -0.309 5.309 7 C 0.114 3.886 8 C -0.564 4.564 9 H 0.077 0.923 10 C -0.137 4.137 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.201 1.201 16 C 0.337 3.663 17 O -0.456 6.456 18 C -0.180 4.180 19 H 0.141 0.859 20 C -0.171 4.171 21 C -0.078 4.078 22 H 0.135 0.865 23 C -0.204 4.204 24 C -0.128 4.128 25 N -0.122 5.122 26 N -0.166 5.166 27 C -0.037 4.037 28 C -0.090 4.090 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.201 0.799 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.627 -11.192 8.252 14.000 hybrid contribution 0.962 0.879 -0.769 1.513 sum -0.664 -10.313 7.483 12.760 Atomic orbital electron populations 1.21750 0.96163 1.00322 1.02161 1.21919 0.95922 0.96817 1.02446 1.20154 0.93524 0.91041 0.85664 1.22141 1.01653 1.02026 0.95020 1.22192 0.95284 1.02535 1.01548 1.48212 1.51024 1.28085 1.03627 1.19515 0.90324 0.80270 0.98533 1.21414 0.93608 0.90686 1.50676 0.92336 1.24891 0.94910 0.98813 0.95073 1.69915 1.09712 1.23766 1.49773 0.86659 0.80498 0.82156 0.78760 1.20295 1.21320 1.20131 1.19406 0.80466 0.82375 0.84019 1.90508 1.37642 1.30576 1.86885 1.22313 1.02063 1.04647 0.88986 0.85894 1.22840 0.98371 0.95294 1.00545 1.20246 0.97501 0.98090 0.91919 0.86516 1.19374 1.04287 0.91825 1.04958 1.23838 0.94052 1.00114 0.94806 1.77338 1.22754 0.88871 1.23276 1.48394 1.30487 1.04886 1.32801 1.21783 0.93704 0.93444 0.94743 1.22206 0.92890 0.99980 0.93886 0.92624 0.92752 0.93819 0.92295 0.90306 0.90202 0.93087 0.91892 0.90901 0.93338 0.92414 0.94069 0.94612 0.92659 0.88476 0.88297 0.79943 0.90983 0.89704 0.89537 0.81026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.40 37.16 0.35 -1.96 16 2 C -0.13 -2.20 4.77 -26.73 -0.13 -2.32 16 3 C 0.18 3.32 0.73 -131.82 -0.10 3.22 16 4 C -0.15 -2.68 6.87 37.16 0.26 -2.43 16 5 C -0.16 -2.83 8.30 37.16 0.31 -2.53 16 6 N -0.58 -11.84 1.64 -160.19 -0.26 -12.10 16 7 C 0.23 5.38 4.42 -5.19 -0.02 5.36 16 8 C -0.53 -13.28 8.65 -34.44 -0.30 -13.58 16 9 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 12 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.55 11.11 6.85 -10.99 -0.08 11.04 16 17 O -0.57 -12.12 12.58 5.55 0.07 -12.05 16 18 C -0.16 -2.92 5.03 -91.78 -0.46 -3.39 16 19 H 0.12 2.41 6.35 -51.93 -0.33 2.08 16 20 C -0.13 -2.19 9.73 -26.69 -0.26 -2.45 16 21 C -0.06 -0.91 5.76 -91.74 -0.53 -1.43 16 22 H 0.12 1.85 7.68 -51.93 -0.40 1.45 16 23 C -0.19 -2.84 5.76 -105.06 -0.61 -3.44 16 24 C 0.06 0.87 11.35 -17.36 -0.20 0.68 16 25 N -0.30 -4.62 12.58 30.62 0.39 -4.24 16 26 N -0.38 -4.84 4.01 -68.16 -0.27 -5.11 16 27 C 0.10 0.80 11.47 59.85 0.69 1.49 16 28 C 0.06 0.71 11.40 -17.22 -0.20 0.51 16 29 H 0.05 0.97 7.60 -51.93 -0.39 0.58 16 30 H 0.05 0.82 6.43 -51.93 -0.33 0.49 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.44 6.29 -51.93 -0.33 1.11 16 34 H 0.08 1.61 7.12 -51.93 -0.37 1.24 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.13 5.21 -51.93 -0.27 0.86 16 37 H 0.07 1.39 6.27 -51.93 -0.33 1.07 16 38 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.04 1.00 5.75 -51.93 -0.30 0.70 16 41 H 0.04 0.88 5.86 -51.93 -0.30 0.57 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.10 1.51 6.98 -51.93 -0.36 1.15 16 45 H 0.18 2.51 7.19 -52.49 -0.38 2.13 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.17 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -29.91 387.09 -7.76 -37.68 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.86 Total: 7.70 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.37 Total: -9.62 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.59 Total: -45.02 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.91 -7.76 -37.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364980047.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.345 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds