Wall clock time and date at job start Tue Mar 31 2020 13:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47354 * 2 1 4 4 N 1.46506 * 109.47186 * 119.99841 * 2 1 3 5 5 C 1.35529 * 125.67869 * 305.37215 * 4 2 1 6 6 C 1.35453 * 108.87421 * 180.30233 * 5 4 2 7 7 C 1.39841 * 107.86121 * 359.72883 * 6 5 4 8 8 C 1.37653 * 125.67529 * 125.21144 * 4 2 1 9 9 C 1.46669 * 126.23526 * 359.96807 * 8 4 2 10 10 O 1.21693 * 120.00306 * 357.92749 * 9 8 4 11 11 N 1.34775 * 120.00112 * 177.92556 * 9 8 4 12 12 C 1.46502 * 120.00095 * 183.25172 * 11 9 8 13 13 C 1.53002 * 109.47056 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.47193 * 180.02562 * 13 12 11 15 15 N 1.46505 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.36938 * 120.00120 * 269.99959 * 15 14 13 17 17 H 1.07996 * 120.00004 * 143.05467 * 16 15 14 18 18 C 1.38810 * 119.99715 * 323.05846 * 16 15 14 19 19 N 1.31619 * 120.00276 * 337.58826 * 18 16 15 20 20 Si 1.86805 * 119.99888 * 157.59339 * 18 16 15 21 21 H 1.48496 * 109.47222 * 89.99697 * 20 18 16 22 22 H 1.48501 * 109.47105 * 210.00058 * 20 18 16 23 23 H 1.48499 * 109.46977 * 329.99682 * 20 18 16 24 24 C 1.46495 * 119.99713 * 90.00193 * 15 14 13 25 25 C 1.53008 * 117.49858 * 183.10559 * 24 15 14 26 26 C 1.52997 * 117.50062 * 114.45017 * 24 15 14 27 27 H 1.08999 * 109.46826 * 300.00384 * 1 2 3 28 28 H 1.08996 * 109.46558 * 59.99805 * 1 2 3 29 29 H 1.08991 * 109.47149 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47138 * 240.00059 * 2 1 3 31 31 H 1.09001 * 109.46950 * 59.99944 * 3 2 1 32 32 H 1.08995 * 109.47301 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47125 * 300.00357 * 3 2 1 34 34 H 1.08002 * 125.56765 * 0.06934 * 5 4 2 35 35 H 1.08000 * 126.06771 * 179.76820 * 6 5 4 36 36 H 1.08000 * 126.45391 * 180.02562 * 7 6 5 37 37 H 0.97005 * 119.99801 * 3.25777 * 11 9 8 38 38 H 1.09001 * 109.46966 * 60.00244 * 12 11 9 39 39 H 1.08994 * 109.47053 * 299.99955 * 12 11 9 40 40 H 1.09003 * 109.47255 * 59.99672 * 13 12 11 41 41 H 1.09003 * 109.47010 * 300.00131 * 13 12 11 42 42 H 1.09003 * 109.47185 * 299.99945 * 14 13 12 43 43 H 1.09001 * 109.46963 * 60.00016 * 14 13 12 44 44 H 0.96999 * 120.00098 * 175.02959 * 19 18 16 45 45 H 1.09004 * 115.55359 * 328.77150 * 24 15 14 46 46 H 1.09001 * 117.49346 * 0.02562 * 25 24 15 47 47 H 1.08996 * 117.50200 * 145.01371 * 25 24 15 48 48 H 1.09005 * 117.49674 * 214.97701 * 26 24 15 49 49 H 1.09000 * 117.49675 * 359.96974 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6810 -0.3920 2.4744 6 6 2.3322 -1.2377 3.3085 7 6 3.1024 -2.1035 2.5258 8 6 2.8939 -1.7528 1.2088 9 6 3.4995 -2.3910 0.0353 10 8 3.2096 -2.0084 -1.0829 11 7 4.3770 -3.4013 0.1954 12 6 5.0359 -3.9914 -0.9725 13 6 5.9748 -5.1104 -0.5173 14 6 6.6633 -5.7261 -1.7369 15 7 7.5628 -6.7972 -1.3009 16 6 8.8669 -6.5137 -0.9942 17 1 9.3538 -7.0276 -0.1786 18 6 9.5630 -5.5657 -1.7315 19 7 9.1713 -5.2629 -2.9510 20 14 11.0558 -4.7198 -0.9930 21 1 12.2767 -5.5024 -1.3124 22 1 11.1814 -3.3531 -1.5601 23 1 10.8960 -4.6314 0.4807 24 6 7.0671 -8.1715 -1.1933 25 6 8.0344 -9.2320 -0.6633 26 6 7.6575 -9.2123 -2.1467 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.0063 0.3945 2.7787 35 1 2.2674 -1.2428 4.3865 36 1 3.7401 -2.8975 2.8852 37 1 4.5723 -3.7378 1.0840 38 1 5.6097 -3.2240 -1.4922 39 1 4.2831 -4.4008 -1.6460 40 1 5.4006 -5.8776 0.0023 41 1 6.7276 -4.7013 0.1566 42 1 5.9107 -6.1351 -2.4111 43 1 7.2375 -4.9587 -2.2559 44 1 9.6124 -4.5502 -3.4392 45 1 6.0148 -8.2723 -0.9272 46 1 9.0394 -8.9069 -0.3944 47 1 7.6185 -10.0305 -0.0489 48 1 6.9937 -9.9980 -2.5077 49 1 8.4144 -8.8743 -2.8545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752293708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:25 Heat of formation + Delta-G solvation = 48.988112 kcal Electronic energy + Delta-G solvation = -26624.547250 eV Core-core repulsion = 22974.733087 eV Total energy + Delta-G solvation = -3649.814164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.57402 -38.98007 -37.11302 -35.76274 -35.12515 -33.54418 -31.68732 -30.00628 -29.95787 -28.70600 -27.62224 -25.41204 -23.80396 -22.76376 -21.98356 -21.42766 -21.00887 -20.33456 -19.71678 -19.13949 -17.69326 -16.41591 -15.83491 -15.69488 -15.48272 -15.22765 -14.92750 -14.75574 -14.56731 -14.14302 -13.97586 -13.72005 -13.45610 -12.94836 -12.79044 -12.65428 -12.53953 -12.41581 -12.29079 -12.15800 -11.91219 -11.60906 -11.51013 -11.31450 -11.02233 -10.81222 -10.72790 -10.65548 -10.21931 -10.08741 -9.75994 -9.62234 -9.56755 -9.25392 -8.92793 -8.85949 -8.46650 -8.26523 -6.57390 -5.80366 -3.42813 1.45288 2.54887 2.66166 3.33097 3.41982 3.43222 3.44549 3.47011 4.38798 4.43676 4.65382 4.75950 4.84998 4.92113 4.94034 5.15772 5.16529 5.17169 5.26866 5.31790 5.35336 5.41304 5.59621 5.64880 5.72550 5.75126 5.81843 5.92350 5.95946 6.01071 6.10182 6.14091 6.28058 6.37838 6.39501 6.50674 6.62410 6.67106 6.69750 6.78677 6.93037 7.04593 7.10013 7.13940 7.24282 7.62015 7.65792 7.78641 8.30433 8.46579 9.13516 9.76140 10.33306 11.14872 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.015731 B = 0.002649 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.464928 B =10565.666703 C =11063.637907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 C -0.159 4.159 4 N -0.400 5.400 5 C 0.012 3.988 6 C -0.209 4.209 7 C -0.143 4.143 8 C -0.048 4.048 9 C 0.584 3.416 10 O -0.555 6.555 11 N -0.711 5.711 12 C 0.124 3.876 13 C -0.146 4.146 14 C 0.153 3.847 15 N -0.552 5.552 16 C -0.260 4.260 17 H 0.064 0.936 18 C 0.014 3.986 19 N -0.881 5.881 20 Si 0.892 3.108 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.121 3.879 25 C -0.196 4.196 26 C -0.222 4.222 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.029 0.971 43 H 0.097 0.903 44 H 0.255 0.745 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 9.392 9.399 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 C -0.216 4.216 4 N -0.074 5.074 5 C -0.123 4.123 6 C -0.233 4.233 7 C -0.170 4.170 8 C -0.161 4.161 9 C 0.372 3.628 10 O -0.436 6.436 11 N -0.361 5.361 12 C 0.000 4.000 13 C -0.186 4.186 14 C 0.026 3.974 15 N -0.268 5.268 16 C -0.389 4.389 17 H 0.082 0.918 18 C -0.187 4.187 19 N -0.522 5.522 20 Si 0.721 3.279 21 H -0.212 1.212 22 H -0.214 1.214 23 H -0.203 1.203 24 C 0.012 3.988 25 C -0.235 4.235 26 C -0.263 4.263 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.180 0.820 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.236 0.764 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.115 0.885 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.575 9.933 8.068 20.940 hybrid contribution 0.915 0.295 0.876 1.301 sum -15.660 10.228 8.944 20.732 Atomic orbital electron populations 1.22135 0.93517 1.03063 1.02896 1.21999 0.95222 0.94300 0.88352 1.22138 1.02337 0.94389 1.02758 1.44187 1.32853 1.23874 1.06462 1.21862 1.04429 1.03222 0.82787 1.20785 1.03460 0.99893 0.99191 1.21368 1.02869 1.01918 0.90819 1.20149 1.03833 0.97251 0.94896 1.17036 0.78967 0.79844 0.86998 1.90702 1.62685 1.64422 1.25769 1.45838 1.43365 1.35281 1.11625 1.21493 0.95335 0.96265 0.86870 1.22462 0.97592 0.95925 1.02668 1.20772 0.91814 0.92835 0.91931 1.43381 1.07444 0.99307 1.76670 1.19014 0.87840 1.22411 1.09669 0.91804 1.25154 0.97355 1.02258 0.93941 1.70090 1.43362 1.30412 1.08353 0.86486 0.83124 0.79107 0.79174 1.21228 1.21432 1.20252 1.21228 0.93766 0.83347 1.00495 1.23026 1.02120 1.01679 0.96627 1.23361 1.05580 1.04345 0.93018 0.92104 0.90514 0.91776 0.84921 0.92184 0.91752 0.90575 0.81988 0.84222 0.83920 0.76358 0.91340 0.91725 0.92998 0.91409 0.95262 0.88541 0.93518 0.89654 0.88512 0.90843 0.91304 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.16 37.16 0.34 -0.91 16 2 C 0.10 1.07 3.47 -67.93 -0.24 0.83 16 3 C -0.16 -1.36 9.31 37.16 0.35 -1.02 16 4 N -0.40 -4.69 2.64 -105.81 -0.28 -4.97 16 5 C 0.01 0.12 10.33 -16.91 -0.17 -0.05 16 6 C -0.21 -2.13 10.81 -39.98 -0.43 -2.56 16 7 C -0.14 -1.65 10.35 -39.12 -0.40 -2.06 16 8 C -0.05 -0.64 6.89 -81.98 -0.56 -1.21 16 9 C 0.58 9.09 7.78 -12.86 -0.10 8.99 16 10 O -0.56 -10.07 14.36 5.19 0.07 -10.00 16 11 N -0.71 -10.27 5.54 -61.62 -0.34 -10.62 16 12 C 0.12 2.03 5.68 -4.04 -0.02 2.01 16 13 C -0.15 -2.62 5.65 -26.73 -0.15 -2.77 16 14 C 0.15 3.37 5.34 -4.04 -0.02 3.35 16 15 N -0.55 -13.16 2.76 -165.66 -0.46 -13.61 16 16 C -0.26 -6.79 8.55 -15.06 -0.13 -6.92 16 17 H 0.06 1.68 6.65 -52.49 -0.35 1.33 16 18 C 0.01 0.37 4.93 -17.43 -0.09 0.28 16 19 N -0.88 -24.64 11.49 55.49 0.64 -24.00 16 20 Si 0.89 21.04 29.61 -169.99 -5.03 16.00 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 25 C -0.20 -3.84 9.80 -26.69 -0.26 -4.11 16 26 C -0.22 -4.54 10.36 -26.70 -0.28 -4.81 16 27 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.13 1.75 5.33 -51.93 -0.28 1.48 16 31 H 0.06 0.43 8.02 -51.93 -0.42 0.02 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.16 1.09 7.89 -52.49 -0.41 0.68 16 35 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.14 1.37 7.44 -52.49 -0.39 0.98 16 37 H 0.40 4.89 7.36 -40.82 -0.30 4.59 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 43 H 0.10 2.43 5.51 -51.93 -0.29 2.14 16 44 H 0.25 6.92 8.32 -40.82 -0.34 6.58 16 45 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 46 H 0.10 2.07 6.41 -51.93 -0.33 1.73 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 49 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -30.39 397.15 -10.25 -40.64 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.22 Total: 9.42 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.62 Total: -8.85 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.44 Total: -53.20 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.39 -10.25 -40.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752293708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.627 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds