Wall clock time and date at job start Tue Mar 31 2020 13:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47354 * 2 1 4 4 N 1.46506 * 109.47186 * 119.99841 * 2 1 3 5 5 C 1.35529 * 125.67869 * 305.37215 * 4 2 1 6 6 C 1.35453 * 108.87421 * 180.30233 * 5 4 2 7 7 C 1.39841 * 107.86121 * 359.72883 * 6 5 4 8 8 C 1.37653 * 125.67529 * 125.21144 * 4 2 1 9 9 C 1.46669 * 126.23526 * 359.96807 * 8 4 2 10 10 O 1.21693 * 120.00306 * 357.92749 * 9 8 4 11 11 N 1.34775 * 120.00112 * 177.92556 * 9 8 4 12 12 C 1.46502 * 120.00095 * 183.25172 * 11 9 8 13 13 C 1.53002 * 109.47056 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.47193 * 180.02562 * 13 12 11 15 15 N 1.46505 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.36938 * 120.00120 * 269.99959 * 15 14 13 17 17 H 1.07996 * 120.00004 * 143.05467 * 16 15 14 18 18 C 1.38810 * 119.99715 * 323.05846 * 16 15 14 19 19 N 1.31619 * 120.00276 * 337.58826 * 18 16 15 20 20 Si 1.86805 * 119.99888 * 157.59339 * 18 16 15 21 21 H 1.48496 * 109.47222 * 89.99697 * 20 18 16 22 22 H 1.48501 * 109.47105 * 210.00058 * 20 18 16 23 23 H 1.48499 * 109.46977 * 329.99682 * 20 18 16 24 24 C 1.46495 * 119.99713 * 90.00193 * 15 14 13 25 25 C 1.53008 * 117.49858 * 183.10559 * 24 15 14 26 26 C 1.52997 * 117.50062 * 114.45017 * 24 15 14 27 27 H 1.08999 * 109.46826 * 300.00384 * 1 2 3 28 28 H 1.08996 * 109.46558 * 59.99805 * 1 2 3 29 29 H 1.08991 * 109.47149 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47138 * 240.00059 * 2 1 3 31 31 H 1.09001 * 109.46950 * 59.99944 * 3 2 1 32 32 H 1.08995 * 109.47301 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47125 * 300.00357 * 3 2 1 34 34 H 1.08002 * 125.56765 * 0.06934 * 5 4 2 35 35 H 1.08000 * 126.06771 * 179.76820 * 6 5 4 36 36 H 1.08000 * 126.45391 * 180.02562 * 7 6 5 37 37 H 0.97005 * 119.99801 * 3.25777 * 11 9 8 38 38 H 1.09001 * 109.46966 * 60.00244 * 12 11 9 39 39 H 1.08994 * 109.47053 * 299.99955 * 12 11 9 40 40 H 1.09003 * 109.47255 * 59.99672 * 13 12 11 41 41 H 1.09003 * 109.47010 * 300.00131 * 13 12 11 42 42 H 1.09003 * 109.47185 * 299.99945 * 14 13 12 43 43 H 1.09001 * 109.46963 * 60.00016 * 14 13 12 44 44 H 0.96999 * 120.00098 * 175.02959 * 19 18 16 45 45 H 1.09004 * 115.55359 * 328.77150 * 24 15 14 46 46 H 1.09001 * 117.49346 * 0.02562 * 25 24 15 47 47 H 1.08996 * 117.50200 * 145.01371 * 25 24 15 48 48 H 1.09005 * 117.49674 * 214.97701 * 26 24 15 49 49 H 1.09000 * 117.49675 * 359.96974 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6810 -0.3920 2.4744 6 6 2.3322 -1.2377 3.3085 7 6 3.1024 -2.1035 2.5258 8 6 2.8939 -1.7528 1.2088 9 6 3.4995 -2.3910 0.0353 10 8 3.2096 -2.0084 -1.0829 11 7 4.3770 -3.4013 0.1954 12 6 5.0359 -3.9914 -0.9725 13 6 5.9748 -5.1104 -0.5173 14 6 6.6633 -5.7261 -1.7369 15 7 7.5628 -6.7972 -1.3009 16 6 8.8669 -6.5137 -0.9942 17 1 9.3538 -7.0276 -0.1786 18 6 9.5630 -5.5657 -1.7315 19 7 9.1713 -5.2629 -2.9510 20 14 11.0558 -4.7198 -0.9930 21 1 12.2767 -5.5024 -1.3124 22 1 11.1814 -3.3531 -1.5601 23 1 10.8960 -4.6314 0.4807 24 6 7.0671 -8.1715 -1.1933 25 6 8.0344 -9.2320 -0.6633 26 6 7.6575 -9.2123 -2.1467 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.0063 0.3945 2.7787 35 1 2.2674 -1.2428 4.3865 36 1 3.7401 -2.8975 2.8852 37 1 4.5723 -3.7378 1.0840 38 1 5.6097 -3.2240 -1.4922 39 1 4.2831 -4.4008 -1.6460 40 1 5.4006 -5.8776 0.0023 41 1 6.7276 -4.7013 0.1566 42 1 5.9107 -6.1351 -2.4111 43 1 7.2375 -4.9587 -2.2559 44 1 9.6124 -4.5502 -3.4392 45 1 6.0148 -8.2723 -0.9272 46 1 9.0394 -8.9069 -0.3944 47 1 7.6185 -10.0305 -0.0489 48 1 6.9937 -9.9980 -2.5077 49 1 8.4144 -8.8743 -2.8545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752293708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:24 Heat of formation + Delta-G solvation = 32.813761 kcal Electronic energy + Delta-G solvation = -26625.248623 eV Core-core repulsion = 22974.733087 eV Total energy + Delta-G solvation = -3650.515536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.44388 -40.18205 -38.83030 -36.81860 -36.25822 -35.22520 -33.39926 -31.48826 -30.76187 -29.91096 -28.26193 -27.13665 -25.38476 -23.73854 -23.09988 -22.92174 -22.52149 -21.51684 -21.20691 -20.20662 -18.60005 -18.25595 -17.31024 -16.99225 -16.72658 -16.63639 -16.21970 -15.96938 -15.66278 -15.55110 -14.93199 -14.86561 -14.83749 -14.37847 -13.93055 -13.69012 -13.63298 -13.57317 -13.26265 -13.18115 -13.10570 -12.97790 -12.77709 -12.57621 -12.47420 -12.32353 -12.29117 -12.11587 -12.03261 -11.82519 -11.41567 -11.29017 -10.96462 -10.85429 -10.45651 -10.21171 -9.67622 -9.14632 -8.52114 -7.79024 -5.46174 0.47991 1.43384 1.47471 1.55782 1.66390 1.85430 2.34647 2.38447 2.50567 3.15855 3.42013 3.51184 3.66284 3.75548 3.94886 4.14035 4.16874 4.19117 4.26247 4.33614 4.42769 4.46881 4.47928 4.55369 4.59186 4.60662 4.67474 4.74122 4.75571 4.89766 4.94530 4.96263 5.02788 5.08127 5.11389 5.15903 5.22058 5.32254 5.37604 5.41076 5.47222 5.56646 5.69625 5.82522 5.85626 6.06036 6.37482 6.46162 6.52730 7.14293 7.16497 7.86163 8.37003 9.11006 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.015731 B = 0.002649 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.464928 B =10565.666703 C =11063.637907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.096 3.904 3 C -0.152 4.152 4 N -0.407 5.407 5 C 0.026 3.974 6 C -0.219 4.219 7 C -0.137 4.137 8 C -0.090 4.090 9 C 0.579 3.421 10 O -0.591 6.591 11 N -0.704 5.704 12 C 0.138 3.862 13 C -0.122 4.122 14 C 0.153 3.847 15 N -0.569 5.569 16 C -0.257 4.257 17 H 0.061 0.939 18 C -0.035 4.035 19 N -0.913 5.913 20 Si 0.948 3.052 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.268 1.268 24 C 0.102 3.898 25 C -0.180 4.180 26 C -0.222 4.222 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.198 0.802 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.414 0.586 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.249 0.751 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.283 9.622 12.243 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.005 4.005 3 C -0.209 4.209 4 N -0.080 5.080 5 C -0.110 4.110 6 C -0.242 4.242 7 C -0.164 4.164 8 C -0.202 4.202 9 C 0.369 3.631 10 O -0.475 6.475 11 N -0.354 5.354 12 C 0.013 3.987 13 C -0.162 4.162 14 C 0.027 3.973 15 N -0.286 5.286 16 C -0.388 4.388 17 H 0.078 0.922 18 C -0.232 4.232 19 N -0.557 5.557 20 Si 0.776 3.224 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.193 1.193 24 C -0.006 4.006 25 C -0.218 4.218 26 C -0.263 4.263 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.215 0.785 35 H 0.183 0.817 36 H 0.175 0.825 37 H 0.251 0.749 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.130 0.870 48 H 0.119 0.881 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.461 10.134 10.947 23.735 hybrid contribution 1.437 0.189 0.018 1.449 sum -17.024 10.323 10.965 22.729 Atomic orbital electron populations 1.22094 0.91349 1.02655 1.04694 1.22030 0.96882 0.94640 0.86951 1.22101 1.00791 0.93518 1.04536 1.44389 1.32591 1.23542 1.07499 1.22524 1.03602 1.03164 0.81728 1.21162 1.03099 0.99485 1.00485 1.21699 1.02479 1.02065 0.90193 1.19985 1.06332 0.99345 0.94583 1.17433 0.78643 0.79585 0.87420 1.90686 1.63963 1.65469 1.27341 1.45632 1.43068 1.35216 1.11521 1.21148 0.94821 0.95216 0.87474 1.22099 0.97243 0.96387 1.00464 1.20671 0.91349 0.91905 0.93411 1.43591 1.07086 1.01031 1.76883 1.19187 0.88779 1.21860 1.08953 0.92151 1.25785 0.99802 1.03385 0.94263 1.70214 1.44894 1.31012 1.09560 0.85603 0.80303 0.77692 0.78802 1.21358 1.22011 1.19274 1.21562 0.95512 0.82099 1.01402 1.23034 1.00749 1.01763 0.96268 1.23275 1.05118 1.05042 0.92889 0.89922 0.89075 0.93237 0.88424 0.90086 0.94080 0.89091 0.78496 0.81710 0.82504 0.74910 0.93573 0.91905 0.90978 0.92601 0.95057 0.91980 0.94133 0.86811 0.90769 0.86989 0.88137 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.16 71.98 0.66 -1.46 16 2 C 0.10 1.96 3.47 44.99 0.16 2.11 16 3 C -0.15 -2.43 9.31 71.98 0.67 -1.76 16 4 N -0.41 -9.08 2.64 -488.66 -1.29 -10.37 16 5 C 0.03 0.43 10.33 83.48 0.86 1.29 16 6 C -0.22 -3.79 10.81 22.01 0.24 -3.55 16 7 C -0.14 -2.94 10.35 22.57 0.23 -2.71 16 8 C -0.09 -2.39 6.89 40.35 0.28 -2.11 16 9 C 0.58 18.58 7.78 86.44 0.67 19.25 16 10 O -0.59 -22.67 14.36 -4.33 -0.06 -22.73 16 11 N -0.70 -20.55 5.54 -467.09 -2.59 -23.13 16 12 C 0.14 4.65 5.68 86.38 0.49 5.14 16 13 C -0.12 -4.36 5.65 30.59 0.17 -4.19 16 14 C 0.15 6.88 5.34 86.38 0.46 7.34 16 15 N -0.57 -27.25 2.76 -678.03 -1.87 -29.13 16 16 C -0.26 -13.62 8.55 84.03 0.72 -12.90 16 17 H 0.06 3.19 6.65 -2.91 -0.02 3.17 16 18 C -0.03 -1.90 4.93 84.86 0.42 -1.48 16 19 N -0.91 -53.07 11.49 21.65 0.25 -52.82 16 20 Si 0.95 44.18 29.61 68.60 2.03 46.21 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.10 4.15 6.56 44.99 0.30 4.45 16 25 C -0.18 -6.70 9.80 30.62 0.30 -6.40 16 26 C -0.22 -8.85 10.36 30.62 0.32 -8.53 16 27 H 0.08 0.80 7.69 -2.39 -0.02 0.78 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 2.73 5.33 -2.39 -0.01 2.71 16 31 H 0.08 0.94 8.02 -2.39 -0.02 0.92 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.20 1.73 7.89 -2.91 -0.02 1.71 16 35 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.16 2.72 7.44 -2.91 -0.02 2.69 16 37 H 0.41 9.81 7.36 -92.70 -0.68 9.13 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.03 1.35 8.07 -2.39 -0.02 1.33 16 43 H 0.06 3.28 5.51 -2.39 -0.01 3.26 16 44 H 0.25 14.15 8.32 -92.71 -0.77 13.38 16 45 H 0.11 3.96 8.14 -2.38 -0.02 3.94 16 46 H 0.07 3.11 6.41 -2.39 -0.02 3.10 16 47 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 48 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 49 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -68.92 397.15 3.66 -65.26 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.25 Total: 32.20 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 6.94 Total: -5.49 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -5.50 Total: -115.45 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.06 Total: -22.73 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.92 3.66 -65.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752293708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.076 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds