Wall clock time and date at job start Tue Mar 31 2020 12:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.34777 * 119.99665 * 85.27876 * 4 2 1 6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 2 7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 2 8 8 C 1.52999 * 109.47004 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47303 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47242 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00151 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99699 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99903 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47325 * 60.00275 * 14 12 10 16 16 H 1.48505 * 109.47031 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47222 * 299.99959 * 14 12 10 18 18 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 19 19 C 1.39871 * 126.03819 * 80.03027 * 18 2 1 20 20 N 1.30837 * 108.20295 * 179.97438 * 19 18 2 21 21 N 1.40092 * 108.20451 * 359.97438 * 20 19 18 22 22 C 1.46498 * 126.03586 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47064 * 304.97477 * 22 21 20 24 24 C 1.53784 * 113.61722 * 272.49898 * 23 22 21 25 25 C 1.53776 * 87.08162 * 220.01940 * 24 23 22 26 26 C 1.53773 * 87.08226 * 25.43174 * 25 24 23 27 27 C 1.34946 * 107.92436 * 359.76045 * 21 20 19 28 28 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 30 30 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 31 31 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 32 32 H 1.09003 * 109.47112 * 299.99065 * 7 5 4 33 33 H 1.08993 * 109.47916 * 59.99687 * 7 5 4 34 34 H 1.09000 * 109.47527 * 299.99994 * 8 7 5 35 35 H 1.09007 * 109.47302 * 59.99534 * 8 7 5 36 36 H 1.08995 * 109.47540 * 300.00020 * 9 8 7 37 37 H 1.09001 * 109.46719 * 60.00219 * 9 8 7 38 38 H 0.97004 * 119.99534 * 179.97438 * 13 12 10 39 39 H 1.08001 * 125.89905 * 359.97438 * 19 18 2 40 40 H 1.09001 * 109.47509 * 64.97607 * 22 21 20 41 41 H 1.08999 * 109.46923 * 184.97690 * 22 21 20 42 42 H 1.09002 * 112.84950 * 43.80484 * 23 22 21 43 43 H 1.08995 * 113.61153 * 334.56764 * 24 23 22 44 44 H 1.09005 * 113.61553 * 105.47045 * 24 23 22 45 45 H 1.09000 * 113.61780 * 270.88064 * 25 24 23 46 46 H 1.09000 * 113.61444 * 139.98174 * 25 24 23 47 47 H 1.09006 * 113.61569 * 220.02080 * 26 25 24 48 48 H 1.09001 * 113.69642 * 89.12887 * 26 25 24 49 49 H 1.07998 * 126.12850 * 180.23661 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1524 -0.0169 -2.3557 6 8 1.8639 1.1598 -2.4102 7 6 2.6607 -0.7259 -3.5845 8 6 2.7169 0.2584 -4.7545 9 6 3.2335 -0.4612 -6.0020 10 6 3.2882 0.5081 -7.1546 11 1 2.9853 1.5349 -7.0115 12 6 3.7251 0.0842 -8.3918 13 7 4.0935 -1.1661 -8.5660 14 14 3.7936 1.2860 -9.8202 15 1 4.7079 2.4060 -9.4814 16 1 4.2938 0.5872 -11.0314 17 1 2.4332 1.8199 -10.0837 18 6 2.0323 -0.7104 1.2306 19 6 2.1219 -2.0956 1.4021 20 7 2.6029 -2.3293 2.5962 21 7 2.8355 -1.0982 3.2230 22 6 3.3729 -0.9059 4.5722 23 6 2.5137 -1.6750 5.5778 24 6 1.3116 -0.8720 6.1022 25 6 1.6086 -1.4794 7.4834 26 6 3.0640 -1.6386 7.0132 27 6 2.4826 -0.1207 2.3622 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.2491 -1.6318 -1.1525 32 1 3.6591 -1.1180 -3.3909 33 1 1.9895 -1.5478 -3.8336 34 1 1.7183 0.6503 -4.9481 35 1 3.3879 1.0806 -4.5058 36 1 4.2321 -0.8527 -5.8083 37 1 2.5627 -1.2836 -6.2509 38 1 4.4004 -1.4644 -9.4365 39 1 1.8423 -2.8432 0.6746 40 1 4.3973 -1.2762 4.6116 41 1 3.3604 0.1553 4.8204 42 1 2.2550 -2.6768 5.2346 43 1 1.4557 0.2075 6.0598 44 1 0.3574 -1.1895 5.6816 45 1 1.1012 -2.4274 7.6618 46 1 1.4900 -0.7735 8.3054 47 1 3.5247 -2.5750 7.3281 48 1 3.6885 -0.7693 7.2195 49 1 2.5454 0.9419 2.5449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890667607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:31 Heat of formation + Delta-G solvation = 33.729970 kcal Electronic energy + Delta-G solvation = -25553.019808 eV Core-core repulsion = 21902.544001 eV Total energy + Delta-G solvation = -3650.475806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63036 -39.52616 -39.20446 -35.73623 -34.08703 -33.26560 -32.09530 -31.24780 -29.63149 -27.94193 -27.62315 -26.17660 -24.30830 -23.84141 -22.92663 -21.39627 -20.67059 -20.11904 -19.62931 -19.58730 -17.63413 -16.68301 -16.22568 -16.04534 -15.75134 -15.48532 -15.23291 -15.02692 -14.44620 -14.36344 -13.89858 -13.79060 -13.60050 -13.31123 -13.04778 -12.98982 -12.62987 -12.53553 -12.24944 -12.19969 -11.95265 -11.69366 -11.61987 -11.29292 -11.23747 -10.98305 -10.83029 -10.74127 -10.63535 -10.56018 -10.50139 -9.66566 -9.61428 -9.60205 -9.21546 -9.00772 -8.94994 -8.61197 -8.27270 -5.93207 -3.94412 1.59827 2.15567 2.48535 3.04117 3.39707 3.42893 3.45314 3.48409 3.89730 4.00701 4.06732 4.27437 4.35052 4.53056 4.55596 4.63270 4.76216 4.91320 4.98101 5.11405 5.15752 5.16992 5.24484 5.27184 5.36604 5.37118 5.42714 5.44434 5.47494 5.57535 5.64403 5.77068 5.79562 5.81030 5.91268 6.00545 6.16411 6.35278 6.36674 6.63584 6.71894 6.80150 7.00524 7.23100 7.41605 7.72846 7.77060 7.89877 8.07885 8.51898 8.57381 9.12522 9.69172 11.18226 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.038459 B = 0.001702 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.882613 B =16447.788967 C =16690.234206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.222 3.778 3 H 0.088 0.912 4 N -0.732 5.732 5 C 0.515 3.485 6 O -0.540 6.540 7 C -0.139 4.139 8 C -0.094 4.094 9 C 0.020 3.980 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.243 4.243 19 C 0.055 3.945 20 N -0.291 5.291 21 N -0.368 5.368 22 C 0.143 3.857 23 C -0.124 4.124 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.133 4.133 27 C 0.067 3.933 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.397 0.603 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.181 0.819 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.393 -2.343 34.339 34.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.116 3.884 3 H 0.106 0.894 4 N -0.385 5.385 5 C 0.303 3.697 6 O -0.416 6.416 7 C -0.179 4.179 8 C -0.132 4.132 9 C -0.017 4.017 10 C -0.556 4.556 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.255 4.255 19 C -0.131 4.131 20 N -0.112 5.112 21 N -0.149 5.149 22 C 0.022 3.978 23 C -0.142 4.142 24 C -0.175 4.175 25 C -0.178 4.178 26 C -0.171 4.171 27 C -0.080 4.080 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.231 0.769 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.198 0.802 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.119 -2.468 35.154 35.481 hybrid contribution -0.026 0.693 -1.367 1.533 sum -4.146 -1.774 33.788 34.087 Atomic orbital electron populations 1.22137 0.94940 1.02074 1.02186 1.18937 0.93248 0.95860 0.80375 0.89359 1.46212 1.68736 1.13944 1.09618 1.21223 0.76554 0.87452 0.84507 1.90663 1.49667 1.16333 1.84945 1.21843 1.02139 1.00722 0.93208 1.21433 1.01486 0.96857 0.93461 1.19134 0.96149 0.95640 0.90808 1.21249 1.43179 0.96569 0.94636 0.92641 1.25018 0.95508 0.95163 0.98814 1.69956 1.44783 1.15375 1.23624 0.86656 0.78431 0.81201 0.81702 1.20264 1.21363 1.20250 1.20134 1.13769 0.93651 0.97904 1.23675 0.98940 0.95746 0.94735 1.77323 1.21895 1.03468 1.08549 1.48583 1.49639 1.03804 1.12896 1.21809 0.97785 1.01309 0.76874 1.22928 0.96642 1.00903 0.93777 1.22994 0.98413 0.99563 0.96483 1.22780 0.96541 1.01420 0.97105 1.22913 0.96961 1.02604 0.94621 1.22277 0.99506 0.95486 0.90733 0.92540 0.92137 0.91795 0.76865 0.89462 0.89400 0.92725 0.92777 0.96630 0.96602 0.93066 0.80210 0.89640 0.88607 0.87701 0.90045 0.91421 0.90054 0.91202 0.90989 0.89797 0.80966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.47 37.16 0.35 -1.26 16 2 C 0.22 2.44 3.01 -69.08 -0.21 2.23 16 3 H 0.09 1.10 7.57 -51.93 -0.39 0.71 16 4 N -0.73 -8.82 5.06 -54.93 -0.28 -9.10 16 5 C 0.51 8.32 7.80 -10.99 -0.09 8.23 16 6 O -0.54 -10.76 15.64 5.55 0.09 -10.67 16 7 C -0.14 -2.34 5.70 -27.88 -0.16 -2.50 16 8 C -0.09 -2.07 4.44 -26.73 -0.12 -2.19 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 14 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C -0.24 -2.33 5.09 -105.05 -0.53 -2.87 16 19 C 0.06 0.54 11.20 -17.36 -0.19 0.34 16 20 N -0.29 -3.09 12.27 30.62 0.38 -2.71 16 21 N -0.37 -3.14 3.68 -61.37 -0.23 -3.37 16 22 C 0.14 0.80 6.35 -4.04 -0.03 0.77 16 23 C -0.12 -0.68 3.87 -89.81 -0.35 -1.02 16 24 C -0.14 -0.70 7.63 -25.92 -0.20 -0.89 16 25 C -0.14 -0.61 8.08 -25.93 -0.21 -0.82 16 26 C -0.13 -0.53 7.64 -25.92 -0.20 -0.73 16 27 C 0.07 0.56 11.36 -17.22 -0.20 0.37 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.40 3.83 7.63 -40.82 -0.31 3.52 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.05 1.24 8.10 -51.93 -0.42 0.81 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.18 1.34 7.72 -52.49 -0.41 0.94 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.33 7.77 -51.93 -0.40 -0.08 16 42 H 0.10 0.79 7.96 -51.93 -0.41 0.37 16 43 H 0.08 0.35 7.90 -51.93 -0.41 -0.06 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.25 8.10 -51.93 -0.42 -0.17 16 49 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -35.06 404.62 -9.54 -44.60 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.64 Total: -1.54 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.67 Total: -13.92 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.61 Total: -41.78 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.06 -9.54 -44.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890667607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.328 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds