Wall clock time and date at job start Tue Mar 31 2020 12:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 N 1.46501 * 109.47049 * 120.00218 * 2 1 3 5 5 C 1.35536 * 125.67503 * 305.62278 * 4 2 1 6 6 C 1.35447 * 108.86800 * 180.26770 * 5 4 2 7 7 C 1.39831 * 107.86665 * 359.76277 * 6 5 4 8 8 C 1.37647 * 125.67697 * 125.48644 * 4 2 1 9 9 C 1.46680 * 126.23679 * 0.02562 * 8 4 2 10 10 O 1.21693 * 119.99706 * 21.15978 * 9 8 4 11 11 N 1.34774 * 119.99712 * 201.16163 * 9 8 4 12 12 C 1.46962 * 120.65681 * 6.65085 * 11 9 8 13 13 C 1.53200 * 108.88214 * 126.47180 * 12 11 9 14 14 C 1.53043 * 109.31320 * 54.55968 * 13 12 11 15 15 H 1.09002 * 109.44589 * 178.61552 * 14 13 12 16 16 N 1.46498 * 109.45825 * 58.65056 * 14 13 12 17 17 C 1.36940 * 119.99744 * 84.93248 * 16 14 13 18 18 H 1.08005 * 120.00277 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00366 * 179.97438 * 17 16 14 20 20 N 1.31628 * 119.99427 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00576 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46877 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47250 * 120.00001 * 21 19 17 24 24 H 1.48502 * 109.47010 * 240.00338 * 21 19 17 25 25 C 1.53033 * 109.53469 * 298.63276 * 14 13 12 26 26 C 1.46928 * 120.62610 * 186.47897 * 11 9 8 27 27 H 1.09004 * 109.58567 * 113.67278 * 26 11 9 28 28 C 1.52996 * 109.58747 * 353.38994 * 26 11 9 29 29 H 1.08995 * 109.47057 * 300.00046 * 1 2 3 30 30 H 1.09003 * 109.46925 * 60.00102 * 1 2 3 31 31 H 1.08997 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46829 * 239.99654 * 2 1 3 33 33 H 1.08995 * 109.47150 * 60.00011 * 3 2 1 34 34 H 1.09000 * 109.46841 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47095 * 299.99795 * 3 2 1 36 36 H 1.07998 * 125.56445 * 359.97438 * 5 4 2 37 37 H 1.08004 * 126.06784 * 179.79116 * 6 5 4 38 38 H 1.08003 * 126.45698 * 179.97438 * 7 6 5 39 39 H 1.08994 * 109.59419 * 6.61625 * 12 11 9 40 40 H 1.08999 * 109.58626 * 246.32310 * 12 11 9 41 41 H 1.09003 * 109.49740 * 294.60336 * 13 12 11 42 42 H 1.09002 * 109.49327 * 174.51358 * 13 12 11 43 43 H 0.96994 * 120.00333 * 264.92650 * 16 14 13 44 44 H 0.97001 * 119.99535 * 179.97438 * 20 19 17 45 45 H 1.09005 * 109.50141 * 301.40848 * 25 14 13 46 46 H 1.09003 * 109.52078 * 181.33165 * 25 14 13 47 47 H 1.09003 * 109.47325 * 303.43587 * 28 26 11 48 48 H 1.09002 * 109.47256 * 63.43649 * 28 26 11 49 49 H 1.09000 * 109.47465 * 183.43611 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6772 -0.3951 2.4742 6 6 2.3291 -1.2402 3.3081 7 6 3.1042 -2.1019 2.5258 8 6 2.8979 -1.7494 1.2090 9 6 3.5097 -2.3827 0.0359 10 8 3.5772 -1.7762 -1.0170 11 7 3.9969 -3.6362 0.1241 12 6 3.7945 -4.4348 1.3411 13 6 3.1632 -5.7762 0.9546 14 6 4.0307 -6.4566 -0.1069 15 1 3.5966 -7.4224 -0.3657 16 7 5.3826 -6.6549 0.4213 17 6 5.6671 -7.7612 1.1766 18 1 4.8948 -8.4873 1.3832 19 6 6.9483 -7.9494 1.6768 20 7 7.8894 -7.0642 1.4255 21 14 7.3366 -9.4588 2.7065 22 1 6.1153 -10.2925 2.8429 23 1 8.4045 -10.2492 2.0431 24 1 7.7985 -9.0343 4.0525 25 6 4.0956 -5.5755 -1.3565 26 6 4.7374 -4.2320 -0.9963 27 1 5.7760 -4.3895 -0.7052 28 6 4.6799 -3.2956 -2.2049 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.0002 0.3895 2.7782 37 1 2.2617 -1.2476 4.3860 38 1 3.7443 -2.8941 2.8854 39 1 3.1313 -3.9017 2.0221 40 1 4.7543 -4.6093 1.8274 41 1 2.1641 -5.6059 0.5535 42 1 3.0982 -6.4148 1.8355 43 1 6.0762 -6.0027 0.2361 44 1 8.7846 -7.1955 1.7753 45 1 3.0877 -5.4072 -1.7359 46 1 4.6940 -6.0712 -2.1209 47 1 3.6393 -3.0948 -2.4597 48 1 5.1821 -2.3589 -1.9631 49 1 5.1773 -3.7660 -3.0531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044869578.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:07 Heat of formation + Delta-G solvation = 51.632257 kcal Electronic energy + Delta-G solvation = -28582.216733 eV Core-core repulsion = 24932.517228 eV Total energy + Delta-G solvation = -3649.699505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58587 -39.74551 -37.27892 -35.62739 -34.11525 -32.72933 -31.87650 -29.90390 -29.22128 -28.69373 -27.56934 -26.98146 -24.36044 -23.54742 -22.72569 -22.27806 -21.47683 -20.11181 -19.12923 -18.27534 -17.21886 -16.85296 -15.75932 -15.64568 -15.44893 -14.92126 -14.72848 -14.34487 -14.11510 -13.98607 -13.79481 -13.59337 -13.16403 -13.08018 -12.84441 -12.63930 -12.49276 -12.45647 -12.26348 -12.15394 -11.97142 -11.84625 -11.54607 -11.28612 -11.19402 -11.05246 -10.89643 -10.76325 -10.56784 -10.20586 -10.17986 -9.89958 -9.61883 -8.93621 -8.83847 -8.62580 -8.21997 -7.96901 -6.96341 -5.77466 -3.06189 1.64378 2.63396 2.81835 3.42430 3.43004 3.48828 3.50780 3.54260 4.43777 4.58928 4.70387 4.71711 4.94668 4.98263 5.20493 5.27167 5.31990 5.33339 5.40045 5.41840 5.43674 5.54099 5.60407 5.64153 5.64319 5.78107 5.79399 5.84180 5.88462 5.95083 6.05708 6.14615 6.19607 6.22052 6.28733 6.35582 6.49582 6.53938 6.61409 6.77483 6.81690 6.87374 6.88920 7.09042 7.12306 7.28656 7.70571 7.79495 8.41044 8.46096 9.52520 10.09482 10.44520 11.45043 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.003588 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.838018 B = 7800.902032 C = 8491.049557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.112 3.888 3 C -0.156 4.156 4 N -0.403 5.403 5 C 0.008 3.992 6 C -0.209 4.209 7 C -0.153 4.153 8 C -0.042 4.042 9 C 0.584 3.416 10 O -0.555 6.555 11 N -0.581 5.581 12 C 0.086 3.914 13 C -0.148 4.148 14 C 0.173 3.827 15 H 0.050 0.950 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.132 4.132 26 C 0.147 3.853 27 H 0.081 0.919 28 C -0.132 4.132 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.161 0.839 37 H 0.139 0.861 38 H 0.158 0.842 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.810 14.915 -1.558 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 C -0.214 4.214 4 N -0.077 5.077 5 C -0.127 4.127 6 C -0.233 4.233 7 C -0.179 4.179 8 C -0.156 4.156 9 C 0.374 3.626 10 O -0.438 6.438 11 N -0.312 5.312 12 C -0.036 4.036 13 C -0.189 4.189 14 C 0.062 3.938 15 H 0.068 0.932 16 N -0.364 5.364 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.171 4.171 26 C 0.045 3.955 27 H 0.099 0.901 28 C -0.189 4.189 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.178 0.822 37 H 0.157 0.843 38 H 0.175 0.825 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.869 15.205 -2.374 21.399 hybrid contribution 0.536 -0.713 0.827 1.216 sum -14.333 14.492 -1.548 20.441 Atomic orbital electron populations 1.22164 0.93716 1.03033 1.02906 1.21775 0.94810 0.94309 0.88039 1.22105 1.02484 0.94284 1.02533 1.44117 1.33071 1.24213 1.06310 1.21801 1.04748 1.03370 0.82789 1.20835 1.03422 0.99831 0.99185 1.21824 1.03284 1.01734 0.91022 1.20247 1.03578 0.96463 0.95267 1.17030 0.78178 0.81418 0.85993 1.90776 1.59324 1.64499 1.29152 1.47819 1.53574 1.12412 1.17356 1.22580 1.02837 0.91954 0.86198 1.22500 0.98092 0.96440 1.01845 1.20206 0.87669 0.95441 0.90454 0.93232 1.42511 1.05784 1.26543 1.61592 1.19279 0.94669 0.99193 1.23718 0.91165 1.24720 0.96135 0.98542 1.01463 1.69669 1.02382 1.35914 1.50068 0.86158 0.77838 0.82555 0.79870 1.20620 1.21996 1.21937 1.22234 1.00501 0.95239 0.99156 1.21285 0.95509 0.92805 0.85920 0.90092 1.22203 1.02921 0.98429 0.95389 0.91983 0.90646 0.91823 0.85956 0.92238 0.91600 0.90812 0.82181 0.84287 0.82451 0.88094 0.89745 0.93464 0.90792 0.78158 0.93586 0.92165 0.90744 0.91491 0.91401 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.15 37.16 0.34 -0.97 16 2 C 0.11 1.20 3.39 -67.93 -0.23 0.97 16 3 C -0.16 -1.40 9.31 37.16 0.35 -1.06 16 4 N -0.40 -5.08 2.64 -105.81 -0.28 -5.36 16 5 C 0.01 0.08 10.34 -16.91 -0.17 -0.09 16 6 C -0.21 -2.49 10.81 -39.98 -0.43 -2.92 16 7 C -0.15 -2.14 8.54 -39.12 -0.33 -2.48 16 8 C -0.04 -0.63 6.54 -81.98 -0.54 -1.17 16 9 C 0.58 9.78 7.47 -12.85 -0.10 9.68 16 10 O -0.56 -9.79 10.14 5.19 0.05 -9.74 16 11 N -0.58 -9.76 2.98 -166.72 -0.50 -10.25 16 12 C 0.09 1.43 4.88 -3.69 -0.02 1.41 16 13 C -0.15 -2.52 5.78 -26.61 -0.15 -2.68 16 14 C 0.17 3.30 3.10 -67.89 -0.21 3.09 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -17.05 4.31 -53.39 -0.23 -17.28 16 17 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 18 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 21 Si 0.90 21.92 29.55 -169.99 -5.02 16.90 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C -0.13 -2.23 5.07 -26.62 -0.14 -2.37 16 26 C 0.15 2.54 3.19 -67.60 -0.22 2.33 16 27 H 0.08 1.58 6.65 -51.93 -0.35 1.23 16 28 C -0.13 -2.13 7.59 37.16 0.28 -1.84 16 29 H 0.06 0.43 7.68 -51.93 -0.40 0.04 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.12 1.60 5.76 -51.93 -0.30 1.30 16 33 H 0.06 0.46 8.02 -51.93 -0.42 0.05 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.16 1.26 7.88 -52.49 -0.41 0.84 16 37 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 38 H 0.16 2.18 5.72 -52.48 -0.30 1.88 16 39 H 0.10 1.50 3.71 -51.93 -0.19 1.31 16 40 H 0.08 1.62 7.74 -51.93 -0.40 1.22 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.38 9.69 6.06 -40.82 -0.25 9.45 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.07 1.10 6.75 -51.93 -0.35 0.75 16 48 H 0.07 1.17 6.74 -51.93 -0.35 0.82 16 49 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -30.04 372.86 -9.36 -39.39 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -7.91 Total: 12.35 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.81 Total: -4.98 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.28 Total: -59.54 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.05 Total: -9.74 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.04 -9.36 -39.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044869578.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.024 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds