Wall clock time and date at job start Tue Mar 31 2020 12:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47452 * 2 1 4 4 N 1.46894 * 109.47498 * 181.40936 * 3 2 1 5 5 C 1.46900 * 111.00306 * 75.76796 * 4 3 2 6 6 C 1.50694 * 109.47257 * 195.93165 * 5 4 3 7 7 H 1.07998 * 120.00316 * 355.46757 * 6 5 4 8 8 C 1.37882 * 120.00014 * 175.46822 * 6 5 4 9 9 N 1.31515 * 119.99624 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00046 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47057 * 90.00146 * 10 8 6 12 12 H 1.48504 * 109.46747 * 209.99938 * 10 8 6 13 13 H 1.48500 * 109.47414 * 329.99797 * 10 8 6 14 14 C 1.46902 * 111.00330 * 199.72614 * 4 3 2 15 15 C 1.50705 * 109.47007 * 66.04402 * 14 4 3 16 16 C 1.38879 * 120.33485 * 90.00018 * 15 14 4 17 17 C 1.38304 * 118.50677 * 179.97438 * 16 15 14 18 18 C 1.39135 * 119.09595 * 0.02562 * 17 16 15 19 19 N 1.38995 * 119.70844 * 179.97438 * 18 17 16 20 20 C 1.47018 * 110.99995 * 303.63791 * 19 18 17 21 21 C 1.53100 * 109.25817 * 177.60708 * 20 19 18 22 22 O 1.43014 * 109.25827 * 56.84516 * 21 20 19 23 23 C 1.43016 * 113.74070 * 301.32863 * 22 21 20 24 24 C 1.47014 * 111.00176 * 180.02562 * 19 18 17 25 25 N 1.32405 * 120.58882 * 0.02562 * 18 17 16 26 26 C 1.31977 * 121.61990 * 359.68605 * 25 18 17 27 27 H 1.09003 * 109.47074 * 300.00354 * 1 2 3 28 28 H 1.08998 * 109.47320 * 59.99602 * 1 2 3 29 29 H 1.08997 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47074 * 239.99646 * 2 1 3 31 31 H 1.09002 * 109.46779 * 119.99896 * 2 1 3 32 32 H 1.09004 * 109.47026 * 61.40471 * 3 2 1 33 33 H 1.09001 * 109.47335 * 301.41217 * 3 2 1 34 34 H 1.09003 * 109.47054 * 315.93390 * 5 4 3 35 35 H 1.09001 * 109.46749 * 75.93101 * 5 4 3 36 36 H 0.97001 * 119.99533 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.47145 * 186.04277 * 14 4 3 38 38 H 1.09001 * 109.46985 * 306.04818 * 14 4 3 39 39 H 1.08002 * 120.74833 * 0.02562 * 16 15 14 40 40 H 1.07997 * 120.44855 * 179.97438 * 17 16 15 41 41 H 1.08999 * 109.50233 * 297.53813 * 20 19 18 42 42 H 1.08994 * 109.50544 * 57.66827 * 20 19 18 43 43 H 1.09005 * 109.50248 * 296.91210 * 21 20 19 44 44 H 1.08999 * 109.54131 * 176.80913 * 21 20 19 45 45 H 1.08991 * 109.50627 * 298.73977 * 23 22 21 46 46 H 1.09001 * 109.54092 * 178.62613 * 23 22 21 47 47 H 1.09006 * 109.50702 * 302.32652 * 24 19 18 48 48 H 1.08996 * 109.50714 * 62.41463 * 24 19 18 49 49 H 1.07998 * 119.56930 * 180.28294 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5086 1.4426 -0.0341 5 6 4.0041 1.1164 -1.3779 6 6 5.4618 0.7427 -1.2989 7 1 5.9883 0.8173 -0.3588 8 6 6.1236 0.3054 -2.4267 9 7 5.4824 0.2140 -3.5713 10 14 7.9304 -0.1585 -2.3285 11 1 8.0538 -1.6013 -1.9993 12 1 8.5816 0.1083 -3.6362 13 1 8.5921 0.6486 -1.2721 14 6 4.0458 2.7297 0.4271 15 6 3.7210 2.9156 1.8869 16 6 4.5997 2.4657 2.8638 17 6 4.2641 2.6564 4.1919 18 6 3.0642 3.2885 4.5025 19 7 2.7140 3.4862 5.8330 20 6 2.6967 2.2131 6.5681 21 6 2.3658 2.4834 8.0382 22 8 1.1160 3.1737 8.1213 23 6 1.0978 4.4182 7.4170 24 6 1.4155 4.1670 5.9405 25 7 2.2523 3.7024 3.5419 26 6 2.5494 3.5387 2.2665 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6974 1.9490 0.9023 33 1 1.6562 1.9636 -0.8770 34 1 3.4355 0.2784 -1.7814 35 1 3.8859 1.9826 -2.0289 36 1 5.9481 -0.0933 -4.3648 37 1 5.1273 2.7418 0.2911 38 1 3.5979 3.5383 -0.1506 39 1 5.5247 1.9786 2.5925 40 1 4.9242 2.3186 4.9771 41 1 1.9401 1.5558 6.1396 42 1 3.6751 1.7382 6.4965 43 1 3.1505 3.0968 8.4811 44 1 2.2959 1.5378 8.5760 45 1 1.8456 5.0878 7.8418 46 1 0.1107 4.8724 7.5047 47 1 1.4585 5.1188 5.4108 48 1 0.6388 3.5409 5.5014 49 1 1.8650 3.8933 1.5101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139433708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:49 Heat of formation + Delta-G solvation = 3.624783 kcal Electronic energy + Delta-G solvation = -27208.657089 eV Core-core repulsion = 23556.875824 eV Total energy + Delta-G solvation = -3651.781265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84841 -39.27328 -37.27342 -35.72928 -33.24759 -32.76724 -32.16989 -31.33282 -30.65754 -27.84422 -27.08276 -25.65804 -24.76226 -23.67067 -22.90482 -22.03098 -21.23711 -20.60226 -19.71436 -17.88177 -16.78080 -16.49414 -16.15485 -15.60654 -15.59251 -15.26459 -15.12173 -14.92297 -14.55880 -14.42108 -14.12196 -13.87822 -13.85337 -13.12892 -12.99634 -12.80218 -12.51564 -12.45570 -11.90545 -11.85327 -11.72933 -11.64176 -11.47605 -11.15134 -11.06538 -10.97159 -10.73866 -10.63728 -10.49790 -10.25536 -10.15594 -9.80918 -9.67607 -9.50626 -9.30976 -9.22686 -8.45464 -8.02939 -7.28953 -6.05516 -4.06851 1.24205 1.47333 3.25148 3.29518 3.35912 3.38316 3.55871 3.91880 4.36731 4.39949 4.60523 4.70869 4.82148 4.90275 4.93842 5.01181 5.11509 5.14114 5.22228 5.27429 5.30343 5.32533 5.33629 5.45437 5.50526 5.55024 5.68133 5.70401 5.77071 5.84112 5.93495 6.00651 6.09844 6.15179 6.25475 6.33810 6.36121 6.47625 6.59243 6.65580 6.71010 6.79874 6.81719 7.11696 7.22323 7.29820 7.77428 8.05882 8.07884 8.16403 8.50375 9.00085 9.57290 11.05159 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.002960 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.138182 B = 9456.662225 C =10351.528774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.051 3.949 4 N -0.531 5.531 5 C 0.192 3.808 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.103 3.897 15 C -0.130 4.130 16 C -0.034 4.034 17 C -0.183 4.183 18 C 0.292 3.708 19 N -0.476 5.476 20 C 0.021 3.979 21 C 0.065 3.935 22 O -0.386 6.386 23 C 0.060 3.940 24 C 0.032 3.968 25 N -0.520 5.520 26 C 0.122 3.878 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.038 0.962 35 H -0.011 1.011 36 H 0.261 0.739 37 H 0.094 0.906 38 H 0.031 0.969 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.058 0.942 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 6.184 19.112 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.078 4.078 4 N -0.255 5.255 5 C 0.068 3.932 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.025 4.025 15 C -0.133 4.133 16 C -0.061 4.061 17 C -0.205 4.205 18 C 0.060 3.940 19 N -0.195 5.195 20 C -0.106 4.106 21 C -0.013 4.013 22 O -0.304 6.304 23 C -0.017 4.017 24 C -0.096 4.096 25 N -0.233 5.233 26 C -0.035 4.035 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.006 0.994 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.077 0.923 46 H 0.119 0.881 47 H 0.113 0.887 48 H 0.077 0.923 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.946 6.411 19.834 22.308 hybrid contribution 1.228 -0.418 -1.506 1.988 sum -6.718 5.993 18.328 20.419 Atomic orbital electron populations 1.21739 0.96732 1.01028 1.01072 1.21454 0.93925 0.97225 1.02828 1.22155 0.89802 0.96585 0.99249 1.62157 1.05400 1.27926 1.29996 1.19789 0.95912 0.95528 0.82005 1.21140 0.94603 1.43606 0.95090 0.91974 1.24983 0.98411 0.95818 0.95365 1.69954 1.36504 1.47469 0.99855 0.86526 0.84917 0.78860 0.77260 1.20671 1.21357 1.19872 1.20881 1.02032 0.91309 0.88287 1.20964 0.95542 0.99052 0.97758 1.21424 0.99216 0.94131 0.91294 1.21485 0.97421 1.04187 0.97432 1.19639 0.91493 0.94414 0.88422 1.59457 1.30523 1.21308 1.08239 1.22959 1.03201 0.89448 0.94955 1.22691 0.86525 0.97789 0.94251 1.87995 1.34240 1.34729 1.73448 1.22790 1.02522 0.86027 0.90343 1.22626 0.88986 1.00926 0.97038 1.67508 1.32282 1.22349 1.01170 1.22379 0.94714 0.94970 0.91466 0.93429 0.93101 0.93084 0.91339 0.92004 0.92258 0.95785 0.94439 0.99359 0.92920 0.88822 0.95060 0.84263 0.85115 0.92751 0.88727 0.92008 0.87928 0.92285 0.88082 0.88691 0.92343 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.99 6.06 -26.73 -0.16 -2.15 16 3 C 0.05 0.90 4.84 -3.83 -0.02 0.88 16 4 N -0.53 -10.90 4.37 -237.52 -1.04 -11.93 16 5 C 0.19 4.81 4.56 -4.98 -0.02 4.79 16 6 C -0.51 -13.67 8.53 -34.44 -0.29 -13.96 16 7 H 0.06 1.65 7.42 -52.49 -0.39 1.26 16 8 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 10 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.10 1.88 4.98 -4.97 -0.02 1.86 16 15 C -0.13 -2.05 4.96 -104.46 -0.52 -2.57 16 16 C -0.03 -0.50 9.85 -39.32 -0.39 -0.89 16 17 C -0.18 -2.42 9.23 -39.22 -0.36 -2.78 16 18 C 0.29 4.02 6.40 -155.02 -0.99 3.03 16 19 N -0.48 -5.59 4.75 -172.88 -0.82 -6.41 16 20 C 0.02 0.20 5.39 -3.71 -0.02 0.18 16 21 C 0.06 0.53 7.01 37.21 0.26 0.79 16 22 O -0.39 -3.97 10.83 -35.23 -0.38 -4.35 16 23 C 0.06 0.53 7.01 37.21 0.26 0.79 16 24 C 0.03 0.34 4.82 -3.71 -0.02 0.33 16 25 N -0.52 -7.70 8.71 -12.44 -0.11 -7.81 16 26 C 0.12 1.82 9.03 -17.57 -0.16 1.66 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.31 6.72 -51.93 -0.35 0.96 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.97 4.98 -51.93 -0.26 0.71 16 33 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 34 H 0.04 1.01 6.52 -51.93 -0.34 0.67 16 35 H -0.01 -0.30 8.05 -51.93 -0.42 -0.72 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.09 1.83 6.97 -51.93 -0.36 1.47 16 38 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 39 H 0.14 1.98 8.06 -52.49 -0.42 1.55 16 40 H 0.13 1.42 7.19 -52.49 -0.38 1.05 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.80 6.83 -51.93 -0.35 0.45 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 1.06 7.86 -51.93 -0.41 0.65 16 48 H 0.06 0.71 8.03 -51.93 -0.42 0.30 16 49 H 0.15 2.03 7.64 -52.49 -0.40 1.63 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -30.28 384.75 -11.29 -41.58 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.27 Total: 0.68 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.19 Total: -8.27 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -1.23 Total: -51.58 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.38 Total: -4.35 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.28 -11.29 -41.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139433708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.201 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds