Wall clock time and date at job start Tue Mar 31 2020 12:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47452 * 2 1 4 4 N 1.46894 * 109.47498 * 181.40936 * 3 2 1 5 5 C 1.46900 * 111.00306 * 75.76796 * 4 3 2 6 6 C 1.50694 * 109.47257 * 195.93165 * 5 4 3 7 7 H 1.07998 * 120.00316 * 355.46757 * 6 5 4 8 8 C 1.37882 * 120.00014 * 175.46822 * 6 5 4 9 9 N 1.31515 * 119.99624 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00046 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47057 * 90.00146 * 10 8 6 12 12 H 1.48504 * 109.46747 * 209.99938 * 10 8 6 13 13 H 1.48500 * 109.47414 * 329.99797 * 10 8 6 14 14 C 1.46902 * 111.00330 * 199.72614 * 4 3 2 15 15 C 1.50705 * 109.47007 * 66.04402 * 14 4 3 16 16 C 1.38879 * 120.33485 * 90.00018 * 15 14 4 17 17 C 1.38304 * 118.50677 * 179.97438 * 16 15 14 18 18 C 1.39135 * 119.09595 * 0.02562 * 17 16 15 19 19 N 1.38995 * 119.70844 * 179.97438 * 18 17 16 20 20 C 1.47018 * 110.99995 * 303.63791 * 19 18 17 21 21 C 1.53100 * 109.25817 * 177.60708 * 20 19 18 22 22 O 1.43014 * 109.25827 * 56.84516 * 21 20 19 23 23 C 1.43016 * 113.74070 * 301.32863 * 22 21 20 24 24 C 1.47014 * 111.00176 * 180.02562 * 19 18 17 25 25 N 1.32405 * 120.58882 * 0.02562 * 18 17 16 26 26 C 1.31977 * 121.61990 * 359.68605 * 25 18 17 27 27 H 1.09003 * 109.47074 * 300.00354 * 1 2 3 28 28 H 1.08998 * 109.47320 * 59.99602 * 1 2 3 29 29 H 1.08997 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47074 * 239.99646 * 2 1 3 31 31 H 1.09002 * 109.46779 * 119.99896 * 2 1 3 32 32 H 1.09004 * 109.47026 * 61.40471 * 3 2 1 33 33 H 1.09001 * 109.47335 * 301.41217 * 3 2 1 34 34 H 1.09003 * 109.47054 * 315.93390 * 5 4 3 35 35 H 1.09001 * 109.46749 * 75.93101 * 5 4 3 36 36 H 0.97001 * 119.99533 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.47145 * 186.04277 * 14 4 3 38 38 H 1.09001 * 109.46985 * 306.04818 * 14 4 3 39 39 H 1.08002 * 120.74833 * 0.02562 * 16 15 14 40 40 H 1.07997 * 120.44855 * 179.97438 * 17 16 15 41 41 H 1.08999 * 109.50233 * 297.53813 * 20 19 18 42 42 H 1.08994 * 109.50544 * 57.66827 * 20 19 18 43 43 H 1.09005 * 109.50248 * 296.91210 * 21 20 19 44 44 H 1.08999 * 109.54131 * 176.80913 * 21 20 19 45 45 H 1.08991 * 109.50627 * 298.73977 * 23 22 21 46 46 H 1.09001 * 109.54092 * 178.62613 * 23 22 21 47 47 H 1.09006 * 109.50702 * 302.32652 * 24 19 18 48 48 H 1.08996 * 109.50714 * 62.41463 * 24 19 18 49 49 H 1.07998 * 119.56930 * 180.28294 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5086 1.4426 -0.0341 5 6 4.0041 1.1164 -1.3779 6 6 5.4618 0.7427 -1.2989 7 1 5.9883 0.8173 -0.3588 8 6 6.1236 0.3054 -2.4267 9 7 5.4824 0.2140 -3.5713 10 14 7.9304 -0.1585 -2.3285 11 1 8.0538 -1.6013 -1.9993 12 1 8.5816 0.1083 -3.6362 13 1 8.5921 0.6486 -1.2721 14 6 4.0458 2.7297 0.4271 15 6 3.7210 2.9156 1.8869 16 6 4.5997 2.4657 2.8638 17 6 4.2641 2.6564 4.1919 18 6 3.0642 3.2885 4.5025 19 7 2.7140 3.4862 5.8330 20 6 2.6967 2.2131 6.5681 21 6 2.3658 2.4834 8.0382 22 8 1.1160 3.1737 8.1213 23 6 1.0978 4.4182 7.4170 24 6 1.4155 4.1670 5.9405 25 7 2.2523 3.7024 3.5419 26 6 2.5494 3.5387 2.2665 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6974 1.9490 0.9023 33 1 1.6562 1.9636 -0.8770 34 1 3.4355 0.2784 -1.7814 35 1 3.8859 1.9826 -2.0289 36 1 5.9481 -0.0933 -4.3648 37 1 5.1273 2.7418 0.2911 38 1 3.5979 3.5383 -0.1506 39 1 5.5247 1.9786 2.5925 40 1 4.9242 2.3186 4.9771 41 1 1.9401 1.5558 6.1396 42 1 3.6751 1.7382 6.4965 43 1 3.1505 3.0968 8.4811 44 1 2.2959 1.5378 8.5760 45 1 1.8456 5.0878 7.8418 46 1 0.1107 4.8724 7.5047 47 1 1.4585 5.1188 5.4108 48 1 0.6388 3.5409 5.5014 49 1 1.8650 3.8933 1.5101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139433708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:48 Heat of formation + Delta-G solvation = -15.293904 kcal Electronic energy + Delta-G solvation = -27209.477465 eV Core-core repulsion = 23556.875824 eV Total energy + Delta-G solvation = -3652.601641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86951 -40.21905 -38.72609 -36.72525 -34.96391 -34.29174 -33.39383 -32.20772 -31.87627 -29.28980 -28.51761 -26.90901 -25.64577 -25.32236 -23.90193 -23.49540 -22.46903 -21.55854 -21.23289 -18.81084 -18.57608 -17.76835 -17.02617 -16.91343 -16.65893 -16.47774 -16.14742 -16.05610 -15.89780 -15.57342 -15.41770 -15.35671 -15.00485 -14.43067 -14.19054 -14.05966 -13.97256 -13.53479 -13.37389 -13.29170 -12.98525 -12.82312 -12.61611 -12.58619 -12.40369 -12.37890 -12.30542 -12.01819 -11.81445 -11.68245 -11.39494 -11.32188 -11.07512 -10.73140 -10.57345 -10.52961 -10.43448 -9.15437 -8.95656 -8.18091 -6.27397 0.11016 0.33494 1.42322 1.43274 1.53908 2.31117 2.41590 2.77959 2.90793 3.14280 3.38249 3.42805 3.81799 3.85708 3.92673 4.00581 4.05598 4.07009 4.13212 4.15300 4.24277 4.25456 4.32069 4.48933 4.51060 4.56856 4.64741 4.70506 4.71044 4.77140 4.78781 4.85520 4.92649 4.94710 4.96379 5.01988 5.13371 5.15922 5.27162 5.33014 5.40562 5.42242 5.48416 5.62555 5.68507 6.06761 6.09361 6.12648 6.36699 6.62800 6.87911 6.95144 7.41873 8.92780 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.002960 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.138182 B = 9456.662225 C =10351.528774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.053 3.947 4 N -0.535 5.535 5 C 0.209 3.791 6 C -0.517 4.517 7 H 0.065 0.935 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.262 1.262 14 C 0.110 3.890 15 C -0.144 4.144 16 C -0.040 4.040 17 C -0.177 4.177 18 C 0.290 3.710 19 N -0.477 5.477 20 C 0.020 3.980 21 C 0.065 3.935 22 O -0.402 6.402 23 C 0.064 3.936 24 C 0.034 3.966 25 N -0.530 5.530 26 C 0.122 3.878 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.018 0.982 34 H 0.011 0.989 35 H -0.040 1.040 36 H 0.263 0.737 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.141 0.859 40 H 0.158 0.842 41 H 0.040 0.960 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.124 0.876 45 H 0.068 0.932 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.042 0.958 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 6.283 21.829 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.075 4.075 4 N -0.259 5.259 5 C 0.083 3.917 6 C -0.555 4.555 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.791 3.209 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.186 1.186 14 C -0.018 4.018 15 C -0.147 4.147 16 C -0.067 4.067 17 C -0.199 4.199 18 C 0.058 3.942 19 N -0.196 5.196 20 C -0.106 4.106 21 C -0.012 4.012 22 O -0.321 6.321 23 C -0.012 4.012 24 C -0.093 4.093 25 N -0.244 5.244 26 C -0.035 4.035 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.037 0.963 34 H 0.029 0.971 35 H -0.022 1.022 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.159 0.841 40 H 0.175 0.825 41 H 0.059 0.941 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.142 0.858 45 H 0.086 0.914 46 H 0.136 0.864 47 H 0.107 0.893 48 H 0.060 0.940 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.661 6.519 22.587 24.725 hybrid contribution 1.090 -0.410 -2.258 2.541 sum -6.571 6.109 20.329 22.221 Atomic orbital electron populations 1.21669 0.93849 1.02276 1.01924 1.21419 0.96435 0.96182 1.01112 1.22216 0.88065 0.97368 0.99852 1.62090 1.07184 1.29698 1.26966 1.19409 0.95163 0.93296 0.83830 1.21459 0.95581 1.43270 0.95230 0.91722 1.25881 1.03116 0.95708 0.94926 1.70088 1.38448 1.48481 1.00620 0.85434 0.79275 0.78706 0.77522 1.20098 1.21090 1.18564 1.20748 1.00739 0.90102 0.90232 1.20694 0.96785 1.01074 0.96171 1.21528 0.99152 0.94092 0.91880 1.21691 0.97500 1.03414 0.97336 1.20008 0.91517 0.93493 0.89193 1.59522 1.30792 1.22224 1.07014 1.23083 1.03679 0.88281 0.95575 1.22853 0.86155 0.98909 0.93259 1.87980 1.35385 1.35266 1.73487 1.22852 1.03858 0.85879 0.88648 1.22626 0.88075 1.00140 0.98493 1.67571 1.32715 1.22959 1.01164 1.22454 0.94465 0.94668 0.91918 0.91984 0.92775 0.91701 0.94263 0.92424 0.90267 0.96336 0.97119 1.02212 0.92822 0.90654 0.94963 0.84081 0.82460 0.94143 0.87185 0.90910 0.85830 0.91356 0.86384 0.89252 0.93991 0.82370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.11 -3.92 6.06 30.59 0.19 -3.73 16 3 C 0.05 1.92 4.84 86.30 0.42 2.33 16 4 N -0.54 -22.63 4.37 -905.37 -3.96 -26.59 16 5 C 0.21 10.95 4.56 85.55 0.39 11.34 16 6 C -0.52 -28.64 8.53 25.60 0.22 -28.42 16 7 H 0.06 3.47 7.42 -2.91 -0.02 3.45 16 8 C 0.00 0.08 5.46 84.66 0.46 0.55 16 9 N -0.94 -55.97 13.29 21.45 0.28 -55.68 16 10 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 13 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 14 C 0.11 4.10 4.98 85.56 0.43 4.52 16 15 C -0.14 -4.49 4.96 -19.76 -0.10 -4.59 16 16 C -0.04 -1.14 9.85 22.44 0.22 -0.92 16 17 C -0.18 -4.33 9.23 22.50 0.21 -4.12 16 18 C 0.29 7.49 6.40 133.06 0.85 8.34 16 19 N -0.48 -10.19 4.75 -700.88 -3.33 -13.53 16 20 C 0.02 0.34 5.39 86.31 0.47 0.80 16 21 C 0.06 0.89 7.01 72.02 0.50 1.39 16 22 O -0.40 -7.30 10.83 -148.98 -1.61 -8.92 16 23 C 0.06 1.00 7.01 72.02 0.50 1.50 16 24 C 0.03 0.69 4.82 86.32 0.42 1.10 16 25 N -0.53 -15.09 8.71 -193.27 -1.68 -16.78 16 26 C 0.12 3.54 9.03 84.62 0.76 4.30 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.57 6.72 -2.39 -0.02 1.55 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.55 4.98 -2.38 -0.01 2.54 16 33 H 0.02 0.69 8.00 -2.39 -0.02 0.67 16 34 H 0.01 0.61 6.52 -2.39 -0.02 0.60 16 35 H -0.04 -2.26 8.05 -2.39 -0.02 -2.28 16 36 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.08 3.05 6.97 -2.39 -0.02 3.03 16 38 H 0.03 1.18 8.07 -2.39 -0.02 1.16 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.16 2.93 7.19 -2.91 -0.02 2.91 16 41 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.11 1.52 6.83 -2.39 -0.02 1.50 16 43 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.09 1.89 7.86 -2.38 -0.02 1.87 16 48 H 0.04 0.99 8.03 -2.39 -0.02 0.97 16 49 H 0.16 4.18 7.64 -2.91 -0.02 4.16 16 Total: -1.00 -66.12 384.75 -0.71 -66.83 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.92 Total: 17.54 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 6.65 Total: -8.58 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -8.69 Total: -112.57 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -1.61 Total: -8.92 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -66.12 -0.71 -66.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139433708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.536 kcal (2) G-P(sol) polarization free energy of solvation -66.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds