Wall clock time and date at job start Tue Mar 31 2020 12:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 C 1.52993 * 109.47322 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47231 * 174.86948 * 4 3 2 6 6 H 1.08999 * 109.47202 * 305.61413 * 5 4 3 7 7 C 1.52997 * 109.47318 * 185.60384 * 5 4 3 8 8 C 1.53006 * 109.46885 * 65.82396 * 7 5 4 9 9 C 1.53004 * 109.46576 * 65.60775 * 5 4 3 10 10 N 1.46903 * 109.47024 * 185.00181 * 9 5 4 11 11 C 1.46895 * 111.00104 * 180.02562 * 10 9 5 12 12 H 1.09002 * 109.47342 * 34.99819 * 11 10 9 13 13 C 1.52992 * 109.47060 * 274.99857 * 11 10 9 14 14 C 1.50703 * 109.46903 * 154.99780 * 11 10 9 15 15 C 1.38291 * 119.93284 * 39.73003 * 14 11 10 16 16 C 1.38107 * 120.07106 * 179.72365 * 15 14 11 17 17 C 1.38873 * 119.92554 * 0.54414 * 16 15 14 18 18 O 1.35755 * 120.06944 * 179.74774 * 17 16 15 19 19 C 1.34824 * 117.00100 * 174.37274 * 18 17 16 20 20 H 1.08001 * 120.00410 * 5.06178 * 19 18 17 21 21 C 1.38657 * 119.99714 * 185.06087 * 19 18 17 22 22 N 1.31554 * 120.00290 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99849 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47192 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46884 * 120.00134 * 23 21 19 26 26 H 1.48499 * 109.47134 * 239.99938 * 23 21 19 27 27 C 1.38882 * 119.86418 * 359.72898 * 17 16 15 28 28 C 1.38102 * 119.93156 * 359.97438 * 27 17 16 29 29 H 1.08998 * 109.47490 * 60.00363 * 1 2 3 30 30 H 1.09007 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47585 * 299.99811 * 1 2 3 32 32 H 1.08993 * 109.47700 * 240.00449 * 2 1 3 33 33 H 1.08998 * 109.47490 * 119.99637 * 2 1 3 34 34 H 1.08998 * 109.47130 * 300.00442 * 3 2 1 35 35 H 1.09002 * 109.46794 * 59.99705 * 3 2 1 36 36 H 1.08994 * 109.47648 * 294.87219 * 4 3 2 37 37 H 1.08997 * 109.46916 * 54.87652 * 4 3 2 38 38 H 1.08998 * 109.46925 * 185.81973 * 7 5 4 39 39 H 1.08994 * 109.47389 * 305.82518 * 7 5 4 40 40 H 1.09002 * 109.46919 * 64.76640 * 8 7 5 41 41 H 1.08999 * 109.47246 * 184.76373 * 8 7 5 42 42 H 1.08999 * 109.47251 * 304.77441 * 8 7 5 43 43 H 1.08996 * 109.47107 * 304.99894 * 9 5 4 44 44 H 1.09000 * 109.47428 * 65.00151 * 9 5 4 45 45 H 1.00902 * 110.99663 * 303.95711 * 10 9 5 46 46 H 1.09001 * 109.47547 * 60.00315 * 13 11 10 47 47 H 1.09002 * 109.47240 * 180.02562 * 13 11 10 48 48 H 1.09003 * 109.47665 * 299.99792 * 13 11 10 49 49 H 1.08004 * 119.96792 * 359.97438 * 15 14 11 50 50 H 1.07997 * 120.03290 * 180.27159 * 16 15 14 51 51 H 0.96998 * 120.00334 * 179.97438 * 22 21 19 52 52 H 1.08005 * 120.03111 * 179.97438 * 27 17 16 53 53 H 1.07999 * 119.96402 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0799 2.8794 -0.1284 6 1 3.6372 3.3444 -1.0092 7 6 5.6034 2.8692 -0.2682 8 6 5.9898 2.2013 -1.5895 9 6 3.6876 3.6737 1.1192 10 7 4.0712 5.0809 0.9444 11 6 3.7097 5.8757 2.1257 12 1 3.8323 5.2693 3.0231 13 6 2.2524 6.3270 2.0102 14 6 4.6049 7.0851 2.2105 15 6 4.9493 7.7707 1.0600 16 6 5.7649 8.8828 1.1351 17 6 6.2483 9.3055 2.3664 18 8 7.0543 10.3952 2.4430 19 6 7.3931 10.8205 3.6767 20 1 7.0937 10.2523 4.5450 21 6 8.1260 11.9874 3.8308 22 7 8.4912 12.6793 2.7732 23 14 8.5961 12.5763 5.5401 24 1 8.0701 11.6263 6.5530 25 1 10.0754 12.6472 5.6498 26 1 8.0171 13.9232 5.7763 27 6 5.9052 8.6115 3.5194 28 6 5.0843 7.5039 3.4384 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 1.6765 1.9564 0.8900 36 1 3.9329 1.0106 0.9331 37 1 3.9335 0.8513 -0.8396 38 1 5.9762 3.8934 -0.2562 39 1 6.0407 2.3136 0.5612 40 1 5.6242 2.8033 -2.4214 41 1 7.0748 2.1177 -1.6507 42 1 5.5453 1.2072 -1.6377 43 1 2.6100 3.6067 1.2685 44 1 4.2011 3.2623 1.9882 45 1 5.0558 5.1646 0.7401 46 1 1.6049 5.4523 1.9489 47 1 1.9843 6.9171 2.8866 48 1 2.1298 6.9335 1.1129 49 1 4.5769 7.4387 0.1022 50 1 6.0299 9.4203 0.2367 51 1 9.0036 13.4958 2.8810 52 1 6.2799 8.9377 4.4784 53 1 4.8168 6.9640 4.3347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037219393.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:36 Heat of formation + Delta-G solvation = -44.553289 kcal Electronic energy + Delta-G solvation = -26469.902765 eV Core-core repulsion = 22919.572685 eV Total energy + Delta-G solvation = -3550.330080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.28789 -38.43528 -37.08505 -35.35222 -34.31051 -32.27922 -31.04922 -30.34133 -30.05200 -27.93120 -26.98615 -25.39295 -24.02942 -23.29653 -22.24903 -21.68285 -21.28998 -20.01532 -19.73303 -17.92594 -17.04001 -16.20882 -15.68928 -15.29036 -15.15666 -14.56387 -14.52222 -14.24189 -13.95279 -13.91706 -13.66273 -13.51682 -13.38345 -13.16323 -12.90194 -12.76572 -12.52207 -12.46575 -12.25210 -11.99641 -11.74270 -11.69648 -11.63965 -11.54478 -11.36878 -11.23925 -11.14743 -10.95238 -10.73956 -10.67162 -10.59669 -10.46803 -10.42181 -10.31774 -10.15193 -9.32795 -8.83020 -8.30833 -8.15854 -7.16827 -6.45145 -4.03928 2.23520 2.31544 3.11717 3.13300 3.18775 3.96404 4.22360 4.43904 4.57512 4.62219 4.67134 4.82716 4.92367 4.93684 5.08147 5.13055 5.15858 5.30865 5.32247 5.34579 5.43082 5.43915 5.49932 5.52122 5.58227 5.62796 5.64950 5.70893 5.73236 5.74643 5.80589 5.83727 5.89793 5.94824 5.98052 6.00686 6.04810 6.05096 6.14324 6.20635 6.25091 6.31368 6.41830 6.50244 6.74443 6.88960 7.05697 7.10116 7.28438 7.44120 7.46226 7.59143 7.84458 8.00108 9.00678 9.71366 10.72984 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.023788 B = 0.002094 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.768708 B =13367.475346 C =13922.706371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.086 4.086 6 H 0.079 0.921 7 C -0.123 4.123 8 C -0.152 4.152 9 C 0.062 3.938 10 N -0.684 5.684 11 C 0.142 3.858 12 H 0.039 0.961 13 C -0.131 4.131 14 C -0.191 4.191 15 C -0.056 4.056 16 C -0.195 4.195 17 C 0.155 3.845 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.234 4.234 28 C -0.066 4.066 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.024 0.976 45 H 0.344 0.656 46 H 0.045 0.955 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.119 0.881 50 H 0.116 0.884 51 H 0.269 0.731 52 H 0.126 0.874 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -22.400 -4.495 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.153 4.153 5 C -0.104 4.104 6 H 0.098 0.902 7 C -0.161 4.161 8 C -0.209 4.209 9 C -0.068 4.068 10 N -0.317 5.317 11 C 0.033 3.967 12 H 0.057 0.943 13 C -0.189 4.189 14 C -0.193 4.193 15 C -0.074 4.074 16 C -0.214 4.214 17 C 0.101 3.899 18 O -0.082 6.082 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.254 4.254 28 C -0.085 4.085 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.164 0.836 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.137 0.863 50 H 0.134 0.866 51 H 0.079 0.921 52 H 0.143 0.857 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.537 -21.867 -5.052 25.235 hybrid contribution 0.935 0.047 1.640 1.888 sum -10.601 -21.820 -3.412 24.498 Atomic orbital electron populations 1.21781 0.96044 1.01384 1.01868 1.21542 0.95749 0.97228 1.01744 1.21674 0.95544 0.96360 1.02290 1.21676 0.95262 0.96442 1.01926 1.21224 0.95440 0.94891 0.98874 0.90242 1.21595 0.95533 1.01198 0.97768 1.21809 1.00943 1.00603 0.97570 1.22082 1.00643 0.88114 0.95915 1.60658 1.24371 1.08342 1.38354 1.20130 0.94379 0.91517 0.90662 0.94346 1.21761 0.94760 1.00377 1.02009 1.19282 1.05655 1.00616 0.93718 1.20496 0.95923 0.93519 0.97481 1.20258 1.04629 1.00609 0.95913 1.19423 0.89126 0.87953 0.93394 1.83980 1.55283 1.37518 1.31408 1.21368 1.35190 1.07974 0.82240 0.89065 1.25288 0.96522 0.95192 0.99549 1.70045 1.35312 1.15431 1.28951 0.85655 0.78551 0.78965 0.80294 1.19137 1.20157 1.20129 1.21120 1.05811 0.99430 0.99020 1.20587 0.96085 0.95767 0.96048 0.92757 0.93007 0.92769 0.92252 0.92260 0.91912 0.91871 0.92273 0.91614 0.91499 0.92421 0.92690 0.92993 0.92709 0.91006 0.95756 0.83606 0.93627 0.92792 0.92019 0.86294 0.86595 0.92082 0.85659 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.59 16 2 C -0.13 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.12 -0.88 4.86 -26.73 -0.13 -1.01 16 4 C -0.12 -0.86 4.57 -26.73 -0.12 -0.98 16 5 C -0.09 -0.75 2.05 -90.62 -0.19 -0.93 16 6 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 7 C -0.12 -1.11 5.29 -26.73 -0.14 -1.25 16 8 C -0.15 -1.23 9.79 37.16 0.36 -0.86 16 9 C 0.06 0.63 4.82 -3.82 -0.02 0.61 16 10 N -0.68 -8.34 5.68 -107.95 -0.61 -8.96 16 11 C 0.14 1.94 2.82 -68.87 -0.19 1.75 16 12 H 0.04 0.52 7.66 -51.93 -0.40 0.12 16 13 C -0.13 -1.68 9.39 37.15 0.35 -1.33 16 14 C -0.19 -3.23 4.72 -104.58 -0.49 -3.72 16 15 C -0.06 -0.99 8.99 -39.61 -0.36 -1.35 16 16 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16 17 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 18 O -0.18 -5.12 9.76 0.05 0.00 -5.12 16 19 C -0.39 -10.99 9.49 30.89 0.29 -10.69 16 20 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 23 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 C -0.23 -5.11 9.17 -39.39 -0.36 -5.47 16 28 C -0.07 -1.21 9.66 -39.61 -0.38 -1.59 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 6.73 -51.93 -0.35 0.14 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.47 6.26 -51.93 -0.33 0.14 16 38 H 0.07 0.68 6.44 -51.93 -0.33 0.34 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.40 6.28 -51.93 -0.33 0.07 16 43 H 0.07 0.72 5.77 -51.93 -0.30 0.42 16 44 H 0.02 0.26 8.05 -51.93 -0.42 -0.16 16 45 H 0.34 4.39 6.12 -39.29 -0.24 4.15 16 46 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.12 1.89 7.70 -52.48 -0.40 1.49 16 50 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 51 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 52 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 53 H 0.10 1.64 8.03 -52.49 -0.42 1.22 16 LS Contribution 413.13 15.07 6.23 6.23 Total: -1.00 -29.16 413.13 -10.10 -39.26 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -9.53 Total: 6.10 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -1.92 Total: -28.46 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.15 Total: -33.57 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.16 -10.10 -39.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037219393.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.297 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds