Wall clock time and date at job start Tue Mar 31 2020 12:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 C 1.52993 * 109.47322 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47231 * 174.86948 * 4 3 2 6 6 H 1.08999 * 109.47202 * 305.61413 * 5 4 3 7 7 C 1.52997 * 109.47318 * 185.60384 * 5 4 3 8 8 C 1.53006 * 109.46885 * 65.82396 * 7 5 4 9 9 C 1.53004 * 109.46576 * 65.60775 * 5 4 3 10 10 N 1.46903 * 109.47024 * 185.00181 * 9 5 4 11 11 C 1.46895 * 111.00104 * 180.02562 * 10 9 5 12 12 H 1.09002 * 109.47342 * 34.99819 * 11 10 9 13 13 C 1.52992 * 109.47060 * 274.99857 * 11 10 9 14 14 C 1.50703 * 109.46903 * 154.99780 * 11 10 9 15 15 C 1.38291 * 119.93284 * 39.73003 * 14 11 10 16 16 C 1.38107 * 120.07106 * 179.72365 * 15 14 11 17 17 C 1.38873 * 119.92554 * 0.54414 * 16 15 14 18 18 O 1.35755 * 120.06944 * 179.74774 * 17 16 15 19 19 C 1.34824 * 117.00100 * 174.37274 * 18 17 16 20 20 H 1.08001 * 120.00410 * 5.06178 * 19 18 17 21 21 C 1.38657 * 119.99714 * 185.06087 * 19 18 17 22 22 N 1.31554 * 120.00290 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99849 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47192 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46884 * 120.00134 * 23 21 19 26 26 H 1.48499 * 109.47134 * 239.99938 * 23 21 19 27 27 C 1.38882 * 119.86418 * 359.72898 * 17 16 15 28 28 C 1.38102 * 119.93156 * 359.97438 * 27 17 16 29 29 H 1.08998 * 109.47490 * 60.00363 * 1 2 3 30 30 H 1.09007 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47585 * 299.99811 * 1 2 3 32 32 H 1.08993 * 109.47700 * 240.00449 * 2 1 3 33 33 H 1.08998 * 109.47490 * 119.99637 * 2 1 3 34 34 H 1.08998 * 109.47130 * 300.00442 * 3 2 1 35 35 H 1.09002 * 109.46794 * 59.99705 * 3 2 1 36 36 H 1.08994 * 109.47648 * 294.87219 * 4 3 2 37 37 H 1.08997 * 109.46916 * 54.87652 * 4 3 2 38 38 H 1.08998 * 109.46925 * 185.81973 * 7 5 4 39 39 H 1.08994 * 109.47389 * 305.82518 * 7 5 4 40 40 H 1.09002 * 109.46919 * 64.76640 * 8 7 5 41 41 H 1.08999 * 109.47246 * 184.76373 * 8 7 5 42 42 H 1.08999 * 109.47251 * 304.77441 * 8 7 5 43 43 H 1.08996 * 109.47107 * 304.99894 * 9 5 4 44 44 H 1.09000 * 109.47428 * 65.00151 * 9 5 4 45 45 H 1.00902 * 110.99663 * 303.95711 * 10 9 5 46 46 H 1.09001 * 109.47547 * 60.00315 * 13 11 10 47 47 H 1.09002 * 109.47240 * 180.02562 * 13 11 10 48 48 H 1.09003 * 109.47665 * 299.99792 * 13 11 10 49 49 H 1.08004 * 119.96792 * 359.97438 * 15 14 11 50 50 H 1.07997 * 120.03290 * 180.27159 * 16 15 14 51 51 H 0.96998 * 120.00334 * 179.97438 * 22 21 19 52 52 H 1.08005 * 120.03111 * 179.97438 * 27 17 16 53 53 H 1.07999 * 119.96402 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0799 2.8794 -0.1284 6 1 3.6372 3.3444 -1.0092 7 6 5.6034 2.8692 -0.2682 8 6 5.9898 2.2013 -1.5895 9 6 3.6876 3.6737 1.1192 10 7 4.0712 5.0809 0.9444 11 6 3.7097 5.8757 2.1257 12 1 3.8323 5.2693 3.0231 13 6 2.2524 6.3270 2.0102 14 6 4.6049 7.0851 2.2105 15 6 4.9493 7.7707 1.0600 16 6 5.7649 8.8828 1.1351 17 6 6.2483 9.3055 2.3664 18 8 7.0543 10.3952 2.4430 19 6 7.3931 10.8205 3.6767 20 1 7.0937 10.2523 4.5450 21 6 8.1260 11.9874 3.8308 22 7 8.4912 12.6793 2.7732 23 14 8.5961 12.5763 5.5401 24 1 8.0701 11.6263 6.5530 25 1 10.0754 12.6472 5.6498 26 1 8.0171 13.9232 5.7763 27 6 5.9052 8.6115 3.5194 28 6 5.0843 7.5039 3.4384 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 1.6765 1.9564 0.8900 36 1 3.9329 1.0106 0.9331 37 1 3.9335 0.8513 -0.8396 38 1 5.9762 3.8934 -0.2562 39 1 6.0407 2.3136 0.5612 40 1 5.6242 2.8033 -2.4214 41 1 7.0748 2.1177 -1.6507 42 1 5.5453 1.2072 -1.6377 43 1 2.6100 3.6067 1.2685 44 1 4.2011 3.2623 1.9882 45 1 5.0558 5.1646 0.7401 46 1 1.6049 5.4523 1.9489 47 1 1.9843 6.9171 2.8866 48 1 2.1298 6.9335 1.1129 49 1 4.5769 7.4387 0.1022 50 1 6.0299 9.4203 0.2367 51 1 9.0036 13.4958 2.8810 52 1 6.2799 8.9377 4.4784 53 1 4.8168 6.9640 4.3347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037219393.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:35 Heat of formation + Delta-G solvation = -58.700151 kcal Electronic energy + Delta-G solvation = -26470.516219 eV Core-core repulsion = 22919.572685 eV Total energy + Delta-G solvation = -3550.943534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89895 -39.49877 -38.45379 -36.41055 -35.12316 -34.23954 -32.07490 -31.75586 -30.98826 -29.38058 -27.74020 -27.35625 -24.88486 -23.95681 -23.79817 -23.11673 -21.82859 -21.31321 -20.57534 -19.76458 -18.84091 -17.30025 -16.73799 -16.30823 -16.23622 -15.93759 -15.70519 -15.54926 -15.50914 -15.05497 -14.86621 -14.59382 -14.41432 -14.07826 -14.01505 -13.87554 -13.71597 -13.53489 -13.42933 -13.23616 -13.00851 -12.80087 -12.66216 -12.46536 -12.38572 -12.27393 -12.16812 -12.10161 -12.00327 -11.83285 -11.63335 -11.46532 -11.36038 -11.18429 -11.02509 -10.96914 -10.79412 -9.77923 -9.28928 -8.91436 -8.47650 -6.15756 0.59690 0.68155 1.34352 1.42656 1.52667 2.16988 2.80975 3.14031 3.29565 3.52309 3.82042 3.87608 3.95501 4.05329 4.11021 4.21597 4.22362 4.31363 4.37637 4.42322 4.53801 4.57950 4.61440 4.62004 4.73362 4.75439 4.79133 4.84683 4.88007 4.92497 4.95199 4.98966 5.04324 5.09216 5.12945 5.15747 5.19045 5.20370 5.22551 5.29036 5.31518 5.39782 5.44358 5.47587 5.48307 5.57515 5.59668 5.63747 5.71083 5.75198 6.02668 6.20706 6.28449 6.52123 6.97150 7.78453 8.75812 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.023788 B = 0.002094 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.768708 B =13367.475346 C =13922.706371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.078 4.078 6 H 0.072 0.928 7 C -0.123 4.123 8 C -0.150 4.150 9 C 0.064 3.936 10 N -0.686 5.686 11 C 0.145 3.855 12 H 0.051 0.949 13 C -0.129 4.129 14 C -0.164 4.164 15 C -0.046 4.046 16 C -0.205 4.205 17 C 0.114 3.886 18 O -0.233 6.233 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.252 1.252 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.242 4.242 28 C -0.065 4.065 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.025 0.975 45 H 0.341 0.659 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.145 0.855 50 H 0.111 0.889 51 H 0.272 0.728 52 H 0.118 0.882 53 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.984 -25.291 -3.549 28.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.147 4.147 5 C -0.097 4.097 6 H 0.090 0.910 7 C -0.161 4.161 8 C -0.208 4.208 9 C -0.065 4.065 10 N -0.319 5.319 11 C 0.036 3.964 12 H 0.069 0.931 13 C -0.187 4.187 14 C -0.165 4.165 15 C -0.064 4.064 16 C -0.224 4.224 17 C 0.064 3.936 18 O -0.140 6.140 19 C -0.489 4.489 20 H 0.119 0.881 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.261 4.261 28 C -0.083 4.083 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.043 0.957 45 H 0.160 0.840 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.162 0.838 50 H 0.129 0.871 51 H 0.081 0.919 52 H 0.136 0.864 53 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.353 -24.818 -4.117 28.481 hybrid contribution 1.277 0.636 1.209 1.871 sum -12.076 -24.182 -2.907 27.185 Atomic orbital electron populations 1.21787 0.95875 1.01740 1.01753 1.21531 0.95907 0.96771 1.01958 1.21638 0.95253 0.96756 1.01926 1.21624 0.95419 0.95457 1.02230 1.21144 0.95148 0.95482 0.97894 0.90950 1.21582 0.95711 1.00483 0.98294 1.21793 1.01026 1.01008 0.96930 1.22126 1.00942 0.86850 0.96542 1.60681 1.24184 1.09604 1.37428 1.20154 0.94090 0.90205 0.91938 0.93137 1.21732 0.94149 1.01150 1.01620 1.19761 1.03496 1.00520 0.92676 1.20753 0.94419 0.92024 0.99177 1.20483 1.05225 1.01753 0.94947 1.19946 0.90306 0.87991 0.95391 1.83944 1.58123 1.39984 1.31916 1.21853 1.35646 1.08687 0.82715 0.88147 1.26594 0.96196 0.94989 1.04338 1.70189 1.37410 1.16481 1.31802 0.84527 0.78419 0.78610 0.74625 1.17492 1.19320 1.19334 1.21214 1.06545 1.00429 0.97915 1.20936 0.94752 0.94573 0.98051 0.92841 0.92471 0.92917 0.91969 0.92122 0.92281 0.92182 0.92148 0.91053 0.92821 0.92393 0.92940 0.93025 0.91691 0.90410 0.95704 0.83970 0.91599 0.92773 0.92851 0.83755 0.87078 0.91854 0.86445 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.34 5.93 30.59 0.18 -1.16 16 3 C -0.12 -1.42 4.86 30.59 0.15 -1.27 16 4 C -0.11 -1.35 4.57 30.59 0.14 -1.21 16 5 C -0.08 -1.17 2.05 -10.79 -0.02 -1.20 16 6 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 7 C -0.12 -1.98 5.29 30.60 0.16 -1.81 16 8 C -0.15 -2.16 9.79 71.98 0.70 -1.45 16 9 C 0.06 1.10 4.82 86.30 0.42 1.52 16 10 N -0.69 -14.61 5.68 -495.46 -2.82 -17.42 16 11 C 0.15 3.44 2.82 44.17 0.12 3.56 16 12 H 0.05 1.13 7.66 -2.39 -0.02 1.12 16 13 C -0.13 -2.82 9.39 71.98 0.68 -2.14 16 14 C -0.16 -5.09 4.72 -19.84 -0.09 -5.18 16 15 C -0.05 -1.56 8.99 22.25 0.20 -1.36 16 16 C -0.20 -8.87 9.99 22.39 0.22 -8.64 16 17 C 0.11 5.74 6.65 22.58 0.15 5.89 16 18 O -0.23 -14.21 9.76 -22.74 -0.22 -14.43 16 19 C -0.41 -24.29 9.49 67.92 0.64 -23.65 16 20 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 21 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 22 N -0.92 -56.98 13.67 21.61 0.30 -56.69 16 23 Si 1.02 43.19 29.55 68.60 2.03 45.22 16 24 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 27 C -0.24 -10.61 9.17 22.39 0.21 -10.40 16 28 C -0.06 -2.23 9.66 22.25 0.21 -2.02 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.76 6.73 -2.39 -0.02 0.74 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.82 6.26 -2.39 -0.01 0.81 16 38 H 0.05 1.00 6.44 -2.39 -0.02 0.99 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.79 6.28 -2.39 -0.01 0.78 16 43 H 0.08 1.28 5.77 -2.39 -0.01 1.27 16 44 H 0.02 0.44 8.05 -2.39 -0.02 0.42 16 45 H 0.34 7.81 6.12 -89.69 -0.55 7.26 16 46 H 0.07 1.21 7.45 -2.39 -0.02 1.19 16 47 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.14 4.23 7.70 -2.91 -0.02 4.21 16 50 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 51 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 52 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 53 H 0.14 3.83 8.03 -2.91 -0.02 3.81 16 Total: -1.00 -67.04 413.13 4.86 -62.18 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.32 Total: 33.45 kcal Atomic # 6 Polarization: -57.56 SS G_CDS: 5.25 Total: -52.31 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -2.52 Total: -74.11 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.22 Total: -14.43 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.04 4.86 -62.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037219393.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.483 kcal (2) G-P(sol) polarization free energy of solvation -67.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds