Wall clock time and date at job start Tue Mar 31 2020 12:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 C 1.53000 * 109.47199 * 119.99786 * 2 1 3 5 5 C 1.53000 * 109.47268 * 175.00136 * 4 2 1 6 6 C 1.53000 * 109.47268 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.47018 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46900 * 304.99694 * 7 6 5 9 9 C 1.52997 * 109.46850 * 185.00297 * 7 6 5 10 10 N 1.46889 * 109.47291 * 64.99860 * 7 6 5 11 11 C 1.46899 * 111.00040 * 200.32964 * 10 7 6 12 12 H 1.08999 * 109.47234 * 329.69836 * 11 10 7 13 13 C 1.53010 * 109.47073 * 209.69908 * 11 10 7 14 14 C 1.50700 * 109.47574 * 89.70299 * 11 10 7 15 15 C 1.38303 * 119.92902 * 39.72330 * 14 11 10 16 16 C 1.38093 * 120.07025 * 179.73270 * 15 14 11 17 17 C 1.38882 * 119.92811 * 0.54291 * 16 15 14 18 18 O 1.35750 * 120.07301 * 179.74893 * 17 16 15 19 19 C 1.34827 * 117.00315 * 185.76033 * 18 17 16 20 20 H 1.07999 * 119.99883 * 5.46521 * 19 18 17 21 21 C 1.38654 * 119.99862 * 185.46449 * 19 18 17 22 22 N 1.31555 * 120.00148 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00200 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46965 * 89.99953 * 23 21 19 25 25 H 1.48494 * 109.47268 * 209.99539 * 23 21 19 26 26 H 1.48499 * 109.47093 * 330.00007 * 23 21 19 27 27 C 1.38881 * 119.86030 * 359.73199 * 17 16 15 28 28 C 1.38093 * 119.93123 * 359.97438 * 27 17 16 29 29 H 1.08992 * 109.47250 * 300.00074 * 1 2 3 30 30 H 1.08998 * 109.46716 * 60.00351 * 1 2 3 31 31 H 1.08998 * 109.46870 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47478 * 240.00375 * 2 1 3 33 33 H 1.09002 * 109.47164 * 59.99880 * 3 2 1 34 34 H 1.09005 * 109.47196 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47212 * 300.00171 * 3 2 1 36 36 H 1.08995 * 109.46998 * 55.00302 * 4 2 1 37 37 H 1.09002 * 109.47171 * 294.99837 * 4 2 1 38 38 H 1.09004 * 109.47069 * 59.99987 * 5 4 2 39 39 H 1.09002 * 109.47046 * 300.00421 * 5 4 2 40 40 H 1.08992 * 109.47166 * 299.99711 * 6 5 4 41 41 H 1.08995 * 109.46998 * 60.00165 * 6 5 4 42 42 H 1.08996 * 109.47656 * 64.97702 * 9 7 6 43 43 H 1.09002 * 109.47230 * 184.97512 * 9 7 6 44 44 H 1.09000 * 109.47216 * 304.97774 * 9 7 6 45 45 H 1.00904 * 110.99921 * 76.37357 * 10 7 6 46 46 H 1.09000 * 109.47099 * 175.01995 * 13 11 10 47 47 H 1.08996 * 109.47148 * 295.02126 * 13 11 10 48 48 H 1.09006 * 109.46898 * 55.02395 * 13 11 10 49 49 H 1.08006 * 119.96541 * 0.02562 * 15 14 11 50 50 H 1.08002 * 120.03902 * 180.27772 * 16 15 14 51 51 H 0.96999 * 120.00736 * 180.02562 * 22 21 19 52 52 H 1.08009 * 120.03221 * 179.97438 * 27 17 16 53 53 H 1.08006 * 119.96320 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 6 4.0748 -1.5527 2.4370 7 6 5.5997 -1.6619 2.3760 8 1 5.8923 -2.1461 1.4443 9 6 6.0994 -2.4914 3.5605 10 7 6.1897 -0.3180 2.4357 11 6 7.5610 -0.3212 1.9089 12 1 8.0186 -1.2932 2.0927 13 6 8.3782 0.7675 2.6076 14 6 7.5303 -0.0526 0.4264 15 6 6.6505 0.8827 -0.0874 16 6 6.6238 1.1351 -1.4448 17 6 7.4738 0.4405 -2.2956 18 8 7.4465 0.6827 -3.6310 19 6 8.2096 -0.1080 -4.4123 20 1 8.7368 -0.9460 -3.9810 21 6 8.3175 0.1550 -5.7694 22 7 9.0617 -0.6167 -6.5318 23 14 7.4061 1.6050 -6.5152 24 1 8.2705 2.8115 -6.4656 25 1 7.0622 1.3003 -7.9273 26 1 6.1611 1.8561 -5.7456 27 6 8.3522 -0.5021 -1.7772 28 6 8.3783 -0.7456 -0.4182 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6055 -1.7197 1.2952 37 1 1.7517 -0.1582 2.1370 38 1 3.9995 0.1676 1.1421 39 1 3.8532 -1.3939 0.3003 40 1 3.7865 -0.9902 3.3249 41 1 3.6402 -2.5513 2.4824 42 1 5.7328 -3.5138 3.4686 43 1 7.1894 -2.4955 3.5672 44 1 5.7319 -2.0559 4.4898 45 1 6.1644 0.0465 3.3762 46 1 9.4166 0.7077 2.2818 47 1 7.9729 1.7465 2.3518 48 1 8.3272 0.6238 3.6869 49 1 5.9869 1.4196 0.5743 50 1 5.9397 1.8688 -1.8449 51 1 9.1375 -0.4326 -7.4812 52 1 9.0142 -1.0442 -2.4364 53 1 9.0614 -1.4783 -0.0144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037231669.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:52 Heat of formation + Delta-G solvation = -41.132498 kcal Electronic energy + Delta-G solvation = -27630.930898 eV Core-core repulsion = 24080.749155 eV Total energy + Delta-G solvation = -3550.181743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.35104 -38.25048 -37.04480 -36.07254 -33.60743 -32.30217 -31.08202 -30.17881 -28.51832 -27.84111 -27.16748 -26.33255 -25.27189 -22.55150 -22.09454 -21.85028 -20.56595 -19.84444 -19.78280 -17.78361 -17.18620 -15.93767 -15.46433 -15.17861 -15.08808 -14.66073 -14.24316 -14.09255 -13.82928 -13.74042 -13.64377 -13.44045 -13.23636 -13.05281 -12.76007 -12.55043 -12.45355 -12.24304 -12.18825 -12.10721 -12.06230 -11.69971 -11.44441 -11.41669 -11.36935 -11.07603 -10.98353 -10.70905 -10.69592 -10.62614 -10.51738 -10.44255 -10.30129 -10.13300 -10.08937 -9.34513 -8.81449 -8.30371 -8.13189 -7.20865 -6.37565 -4.03666 2.23592 2.33640 3.24586 3.28255 3.43469 4.18971 4.27423 4.56404 4.61061 4.89025 4.93509 4.96772 5.00169 5.06528 5.12592 5.18598 5.25138 5.32026 5.38250 5.43725 5.51473 5.56779 5.59634 5.66101 5.68409 5.71817 5.74195 5.83600 5.87081 5.89288 5.89322 5.94015 5.96824 6.01791 6.07051 6.10681 6.22193 6.24243 6.26799 6.32152 6.33870 6.44360 6.52148 6.66898 6.71064 6.87995 7.09145 7.15030 7.37197 7.50251 7.53897 7.71080 7.86023 8.10007 8.98465 9.62925 10.70476 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.009495 B = 0.003888 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.188958 B = 7199.795344 C = 9282.105629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.102 4.102 7 C 0.084 3.916 8 H 0.081 0.919 9 C -0.183 4.183 10 N -0.672 5.672 11 C 0.138 3.862 12 H 0.044 0.956 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.041 4.041 16 C -0.198 4.198 17 C 0.159 3.841 18 O -0.221 6.221 19 C -0.387 4.387 20 H 0.105 0.895 21 C 0.063 3.937 22 N -0.882 5.882 23 Si 0.904 3.096 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.259 1.259 27 C -0.223 4.223 28 C -0.074 4.074 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.334 0.666 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.047 0.953 49 H 0.119 0.881 50 H 0.113 0.887 51 H 0.278 0.722 52 H 0.129 0.871 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 0.002 19.935 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.140 4.140 7 C -0.026 4.026 8 H 0.099 0.901 9 C -0.242 4.242 10 N -0.303 5.303 11 C 0.029 3.971 12 H 0.062 0.938 13 C -0.207 4.207 14 C -0.164 4.164 15 C -0.060 4.060 16 C -0.217 4.217 17 C 0.107 3.893 18 O -0.126 6.126 19 C -0.463 4.463 20 H 0.122 0.878 21 C -0.140 4.140 22 N -0.521 5.521 23 Si 0.730 3.270 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.242 4.242 28 C -0.093 4.093 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.153 0.847 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.137 0.863 50 H 0.131 0.869 51 H 0.088 0.912 52 H 0.147 0.853 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.608 0.329 18.973 21.739 hybrid contribution 0.359 -0.142 0.193 0.432 sum -10.249 0.187 19.166 21.735 Atomic orbital electron populations 1.21846 0.95881 1.01274 1.01395 1.21118 0.95023 0.96779 0.98774 1.21877 1.01997 0.95618 1.01046 1.21656 0.96462 0.99606 0.97301 1.21563 0.93915 1.02396 0.97250 1.21532 0.94003 0.99836 0.98673 1.21603 0.94635 0.88489 0.97880 0.90108 1.22527 1.01216 1.01081 0.99360 1.60557 1.19876 1.22757 1.27115 1.20176 0.87614 0.97124 0.92208 0.93768 1.22000 1.00358 0.99662 0.98658 1.19204 1.01606 1.02156 0.93420 1.20405 0.96480 0.96013 0.93095 1.20253 1.03423 1.05136 0.92934 1.19164 0.93119 0.93084 0.83898 1.83586 1.61428 1.54413 1.13172 1.20745 1.26607 1.09117 0.89814 0.87807 1.24453 0.96284 0.98293 0.94986 1.69646 1.37663 1.38265 1.06517 0.86197 0.81083 0.81704 0.78030 1.19962 1.20845 1.18331 1.21194 1.03852 1.03749 0.95421 1.20622 0.97655 0.98068 0.92922 0.93038 0.92940 0.93057 0.91201 0.93196 0.91682 0.93155 0.92818 0.92561 0.89984 0.92442 0.92493 0.92532 0.92364 0.92844 0.92790 0.84742 0.92022 0.91752 0.93377 0.86324 0.86930 0.91152 0.85286 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 2 C -0.10 -1.04 2.92 -90.62 -0.26 -1.30 16 3 C -0.15 -1.59 8.95 37.16 0.33 -1.26 16 4 C -0.11 -1.12 4.68 -26.73 -0.13 -1.25 16 5 C -0.11 -1.26 4.86 -26.73 -0.13 -1.39 16 6 C -0.10 -0.99 4.89 -26.73 -0.13 -1.13 16 7 C 0.08 0.87 2.42 -67.72 -0.16 0.71 16 8 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 9 C -0.18 -1.61 9.17 37.16 0.34 -1.27 16 10 N -0.67 -7.13 4.74 -100.95 -0.48 -7.61 16 11 C 0.14 1.68 2.59 -68.86 -0.18 1.50 16 12 H 0.04 0.55 6.63 -51.93 -0.34 0.20 16 13 C -0.15 -1.60 9.17 37.16 0.34 -1.26 16 14 C -0.16 -2.59 4.84 -104.58 -0.51 -3.09 16 15 C -0.04 -0.70 9.32 -39.61 -0.37 -1.06 16 16 C -0.20 -3.94 9.99 -39.40 -0.39 -4.33 16 17 C 0.16 3.70 6.65 -39.10 -0.26 3.44 16 18 O -0.22 -5.90 8.59 0.06 0.00 -5.90 16 19 C -0.39 -11.05 9.90 30.89 0.31 -10.74 16 20 H 0.10 3.03 5.53 -52.49 -0.29 2.74 16 21 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 22 N -0.88 -25.78 13.96 55.48 0.77 -25.01 16 23 Si 0.90 21.97 28.62 -169.99 -4.86 17.11 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.22 -4.84 9.13 -39.40 -0.36 -5.20 16 28 C -0.07 -1.33 9.66 -39.61 -0.38 -1.71 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.77 6.57 -51.93 -0.34 0.42 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.00 6.18 -51.93 -0.32 0.68 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.49 7.09 -51.93 -0.37 0.12 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.33 3.05 8.04 -39.29 -0.32 2.74 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.42 8.03 -51.93 -0.42 0.00 16 49 H 0.12 1.77 7.70 -52.48 -0.40 1.37 16 50 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 51 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 52 H 0.13 2.98 5.72 -52.48 -0.30 2.68 16 53 H 0.10 1.63 8.03 -52.48 -0.42 1.20 16 LS Contribution 416.91 15.07 6.28 6.28 Total: -1.00 -28.52 416.91 -9.81 -38.34 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -9.83 Total: 5.47 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: -1.70 Total: -28.68 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.30 Total: -32.62 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: 0.00 Total: -5.90 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.86 Total: 17.11 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -28.52 -9.81 -38.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037231669.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.795 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds