Wall clock time and date at job start Tue Mar 31 2020 12:44:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53002 * 109.47117 * 2 1
4 4 C 1.53000 * 109.47199 * 119.99786 * 2 1 3
5 5 C 1.53000 * 109.47268 * 175.00136 * 4 2 1
6 6 C 1.53000 * 109.47268 * 180.02562 * 5 4 2
7 7 C 1.53005 * 109.47018 * 180.02562 * 6 5 4
8 8 H 1.09005 * 109.46900 * 304.99694 * 7 6 5
9 9 C 1.52997 * 109.46850 * 185.00297 * 7 6 5
10 10 N 1.46889 * 109.47291 * 64.99860 * 7 6 5
11 11 C 1.46899 * 111.00040 * 200.32964 * 10 7 6
12 12 H 1.08999 * 109.47234 * 329.69836 * 11 10 7
13 13 C 1.53010 * 109.47073 * 209.69908 * 11 10 7
14 14 C 1.50700 * 109.47574 * 89.70299 * 11 10 7
15 15 C 1.38303 * 119.92902 * 39.72330 * 14 11 10
16 16 C 1.38093 * 120.07025 * 179.73270 * 15 14 11
17 17 C 1.38882 * 119.92811 * 0.54291 * 16 15 14
18 18 O 1.35750 * 120.07301 * 179.74893 * 17 16 15
19 19 C 1.34827 * 117.00315 * 185.76033 * 18 17 16
20 20 H 1.07999 * 119.99883 * 5.46521 * 19 18 17
21 21 C 1.38654 * 119.99862 * 185.46449 * 19 18 17
22 22 N 1.31555 * 120.00148 * 180.02562 * 21 19 18
23 23 Si 1.86803 * 120.00200 * 0.02562 * 21 19 18
24 24 H 1.48501 * 109.46965 * 89.99953 * 23 21 19
25 25 H 1.48494 * 109.47268 * 209.99539 * 23 21 19
26 26 H 1.48499 * 109.47093 * 330.00007 * 23 21 19
27 27 C 1.38881 * 119.86030 * 359.73199 * 17 16 15
28 28 C 1.38093 * 119.93123 * 359.97438 * 27 17 16
29 29 H 1.08992 * 109.47250 * 300.00074 * 1 2 3
30 30 H 1.08998 * 109.46716 * 60.00351 * 1 2 3
31 31 H 1.08998 * 109.46870 * 179.97438 * 1 2 3
32 32 H 1.09003 * 109.47478 * 240.00375 * 2 1 3
33 33 H 1.09002 * 109.47164 * 59.99880 * 3 2 1
34 34 H 1.09005 * 109.47196 * 180.02562 * 3 2 1
35 35 H 1.09003 * 109.47212 * 300.00171 * 3 2 1
36 36 H 1.08995 * 109.46998 * 55.00302 * 4 2 1
37 37 H 1.09002 * 109.47171 * 294.99837 * 4 2 1
38 38 H 1.09004 * 109.47069 * 59.99987 * 5 4 2
39 39 H 1.09002 * 109.47046 * 300.00421 * 5 4 2
40 40 H 1.08992 * 109.47166 * 299.99711 * 6 5 4
41 41 H 1.08995 * 109.46998 * 60.00165 * 6 5 4
42 42 H 1.08996 * 109.47656 * 64.97702 * 9 7 6
43 43 H 1.09002 * 109.47230 * 184.97512 * 9 7 6
44 44 H 1.09000 * 109.47216 * 304.97774 * 9 7 6
45 45 H 1.00904 * 110.99921 * 76.37357 * 10 7 6
46 46 H 1.09000 * 109.47099 * 175.01995 * 13 11 10
47 47 H 1.08996 * 109.47148 * 295.02126 * 13 11 10
48 48 H 1.09006 * 109.46898 * 55.02395 * 13 11 10
49 49 H 1.08006 * 119.96541 * 0.02562 * 15 14 11
50 50 H 1.08002 * 120.03902 * 180.27772 * 16 15 14
51 51 H 0.96999 * 120.00736 * 180.02562 * 22 21 19
52 52 H 1.08009 * 120.03221 * 179.97438 * 27 17 16
53 53 H 1.08006 * 119.96320 * 180.02562 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5648 -0.8310 1.1880
6 6 4.0748 -1.5527 2.4370
7 6 5.5997 -1.6619 2.3760
8 1 5.8923 -2.1461 1.4443
9 6 6.0994 -2.4914 3.5605
10 7 6.1897 -0.3180 2.4357
11 6 7.5610 -0.3212 1.9089
12 1 8.0186 -1.2932 2.0927
13 6 8.3782 0.7675 2.6076
14 6 7.5303 -0.0526 0.4264
15 6 6.6505 0.8827 -0.0874
16 6 6.6238 1.1351 -1.4448
17 6 7.4738 0.4405 -2.2956
18 8 7.4465 0.6827 -3.6310
19 6 8.2096 -0.1080 -4.4123
20 1 8.7368 -0.9460 -3.9810
21 6 8.3175 0.1550 -5.7694
22 7 9.0617 -0.6167 -6.5318
23 14 7.4061 1.6050 -6.5152
24 1 8.2705 2.8115 -6.4656
25 1 7.0622 1.3003 -7.9273
26 1 6.1611 1.8561 -5.7456
27 6 8.3522 -0.5021 -1.7772
28 6 8.3783 -0.7456 -0.4182
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8934 -0.5138 -0.8900
33 1 1.6766 1.9564 0.8900
34 1 3.1300 1.4425 -0.0005
35 1 1.6766 1.9564 -0.8900
36 1 1.6055 -1.7197 1.2952
37 1 1.7517 -0.1582 2.1370
38 1 3.9995 0.1676 1.1421
39 1 3.8532 -1.3939 0.3003
40 1 3.7865 -0.9902 3.3249
41 1 3.6402 -2.5513 2.4824
42 1 5.7328 -3.5138 3.4686
43 1 7.1894 -2.4955 3.5672
44 1 5.7319 -2.0559 4.4898
45 1 6.1644 0.0465 3.3762
46 1 9.4166 0.7077 2.2818
47 1 7.9729 1.7465 2.3518
48 1 8.3272 0.6238 3.6869
49 1 5.9869 1.4196 0.5743
50 1 5.9397 1.8688 -1.8449
51 1 9.1375 -0.4326 -7.4812
52 1 9.0142 -1.0442 -2.4364
53 1 9.0614 -1.4783 -0.0144
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000037231669.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:44:51
Heat of formation + Delta-G solvation = -54.632261 kcal
Electronic energy + Delta-G solvation = -27631.516292 eV
Core-core repulsion = 24080.749155 eV
Total energy + Delta-G solvation = -3550.767137 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 319.225 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.94088 -39.49563 -38.19382 -37.25899 -34.75372 -34.28760 -32.01167 -31.77212
-29.90272 -28.77880 -27.96972 -27.24027 -27.10457 -23.87950 -23.61438 -22.85258
-21.41144 -21.27063 -20.62592 -19.71616 -19.04678 -16.98712 -16.71196 -16.48145
-16.06206 -15.98090 -15.64712 -15.49128 -15.39793 -15.01920 -14.86139 -14.46588
-14.30746 -14.15009 -14.07621 -13.95637 -13.73709 -13.70453 -13.27683 -13.03051
-12.98732 -12.82333 -12.63616 -12.47900 -12.40817 -12.27162 -12.24110 -12.02836
-11.91688 -11.79533 -11.78949 -11.52063 -11.36725 -11.26732 -11.14430 -10.98346
-10.87814 -9.72438 -9.19529 -8.90268 -8.49933 -6.21693 0.63791 0.73393
1.29952 1.34420 1.51067 2.27907 2.78151 3.12484 3.16886 3.33331
3.79953 4.01502 4.06537 4.12489 4.14128 4.21259 4.26661 4.31596
4.41591 4.45364 4.47724 4.54723 4.66325 4.72249 4.78215 4.79747
4.82548 4.86946 4.89656 4.92907 4.98814 5.02467 5.06957 5.09091
5.13380 5.17322 5.20112 5.23572 5.30242 5.33451 5.40035 5.43419
5.44866 5.47713 5.51544 5.64685 5.65756 5.78004 5.81346 5.84516
5.94805 6.29130 6.32993 6.74579 6.85054 7.61925 8.62147
Molecular weight = 319.23amu
Principal moments of inertia in cm(-1)
A = 0.009495 B = 0.003888 C = 0.003016
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2948.188958 B = 7199.795344 C = 9282.105629
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.102 4.102
3 C -0.146 4.146
4 C -0.106 4.106
5 C -0.109 4.109
6 C -0.096 4.096
7 C 0.086 3.914
8 H 0.050 0.950
9 C -0.176 4.176
10 N -0.672 5.672
11 C 0.141 3.859
12 H 0.051 0.949
13 C -0.145 4.145
14 C -0.134 4.134
15 C -0.032 4.032
16 C -0.196 4.196
17 C 0.117 3.883
18 O -0.248 6.248
19 C -0.397 4.397
20 H 0.077 0.923
21 C 0.010 3.990
22 N -0.925 5.925
23 Si 0.969 3.031
24 H -0.265 1.265
25 H -0.266 1.266
26 H -0.264 1.264
27 C -0.238 4.238
28 C -0.078 4.078
29 H 0.062 0.938
30 H 0.050 0.950
31 H 0.054 0.946
32 H 0.047 0.953
33 H 0.063 0.937
34 H 0.051 0.949
35 H 0.045 0.955
36 H 0.057 0.943
37 H 0.069 0.931
38 H 0.072 0.928
39 H 0.027 0.973
40 H 0.073 0.927
41 H 0.062 0.938
42 H 0.059 0.941
43 H 0.051 0.949
44 H 0.070 0.930
45 H 0.351 0.649
46 H 0.056 0.944
47 H 0.060 0.940
48 H 0.076 0.924
49 H 0.148 0.852
50 H 0.120 0.880
51 H 0.284 0.716
52 H 0.102 0.898
53 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.928 1.087 23.812 26.655
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.120 4.120
3 C -0.203 4.203
4 C -0.144 4.144
5 C -0.147 4.147
6 C -0.134 4.134
7 C -0.024 4.024
8 H 0.069 0.931
9 C -0.235 4.235
10 N -0.305 5.305
11 C 0.032 3.968
12 H 0.068 0.932
13 C -0.203 4.203
14 C -0.135 4.135
15 C -0.050 4.050
16 C -0.215 4.215
17 C 0.069 3.931
18 O -0.156 6.156
19 C -0.473 4.473
20 H 0.095 0.905
21 C -0.188 4.188
22 N -0.566 5.566
23 Si 0.792 3.208
24 H -0.190 1.190
25 H -0.191 1.191
26 H -0.188 1.188
27 C -0.258 4.258
28 C -0.096 4.096
29 H 0.081 0.919
30 H 0.069 0.931
31 H 0.074 0.926
32 H 0.066 0.934
33 H 0.082 0.918
34 H 0.070 0.930
35 H 0.064 0.936
36 H 0.076 0.924
37 H 0.088 0.912
38 H 0.091 0.909
39 H 0.046 0.954
40 H 0.092 0.908
41 H 0.080 0.920
42 H 0.078 0.922
43 H 0.070 0.930
44 H 0.089 0.911
45 H 0.172 0.828
46 H 0.075 0.925
47 H 0.080 0.920
48 H 0.095 0.905
49 H 0.166 0.834
50 H 0.138 0.862
51 H 0.094 0.906
52 H 0.120 0.880
53 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -12.254 1.409 22.906 26.016
hybrid contribution 0.833 -0.553 -0.662 1.199
sum -11.421 0.857 22.244 25.019
Atomic orbital electron populations
1.21815 0.94657 1.01737 1.01888 1.21132 0.96103 0.96527 0.98275
1.21855 1.01114 0.95841 1.01525 1.21599 0.95451 0.99946 0.97361
1.21490 0.94889 1.01455 0.96865 1.21487 0.93350 1.00224 0.98352
1.21536 0.95134 0.88399 0.97343 0.93133 1.22444 1.01041 1.00956
0.99063 1.60407 1.18565 1.23125 1.28379 1.20130 0.89086 0.98255
0.89349 0.93157 1.21954 0.99504 0.98496 1.00297 1.19758 0.98657
0.99310 0.95820 1.20721 0.96473 0.95793 0.92003 1.20531 1.02522
1.04614 0.93851 1.19664 0.95156 0.95050 0.83270 1.83521 1.62484
1.55002 1.14638 1.20672 1.26831 1.09162 0.90665 0.90530 1.25261
0.97260 1.01075 0.95207 1.69729 1.39634 1.40204 1.07080 0.85235
0.79508 0.78451 0.77638 1.19043 1.19085 1.18824 1.21182 1.03799
1.03845 0.96938 1.20892 0.98521 0.98728 0.91463 0.91888 0.93106
0.92642 0.93411 0.91820 0.92974 0.93580 0.92425 0.91197 0.90922
0.95375 0.90819 0.91967 0.92192 0.93031 0.91106 0.82849 0.92502
0.92043 0.90467 0.83445 0.86152 0.90624 0.87986 0.85487
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.41 9.19 71.98 0.66 -1.75 16
2 C -0.10 -2.04 2.92 -10.79 -0.03 -2.07 16
3 C -0.15 -2.96 8.95 71.98 0.64 -2.31 16
4 C -0.11 -1.90 4.68 30.59 0.14 -1.76 16
5 C -0.11 -2.26 4.86 30.59 0.15 -2.11 16
6 C -0.10 -1.59 4.89 30.60 0.15 -1.44 16
7 C 0.09 1.55 2.42 44.92 0.11 1.65 16
8 H 0.05 1.23 7.86 -2.38 -0.02 1.21 16
9 C -0.18 -2.47 9.17 71.98 0.66 -1.81 16
10 N -0.67 -11.77 4.74 -473.31 -2.24 -14.01 16
11 C 0.14 2.97 2.59 44.17 0.11 3.09 16
12 H 0.05 1.06 6.63 -2.39 -0.02 1.04 16
13 C -0.14 -2.52 9.17 71.99 0.66 -1.86 16
14 C -0.13 -4.03 4.84 -19.84 -0.10 -4.12 16
15 C -0.03 -1.01 9.32 22.25 0.21 -0.80 16
16 C -0.20 -7.82 9.99 22.39 0.22 -7.59 16
17 C 0.12 5.69 6.65 22.58 0.15 5.84 16
18 O -0.25 -14.01 8.59 -22.71 -0.19 -14.21 16
19 C -0.40 -24.16 9.90 67.92 0.67 -23.49 16
20 H 0.08 4.91 5.53 -2.91 -0.02 4.89 16
21 C 0.01 0.59 5.49 84.83 0.47 1.06 16
22 N -0.93 -56.55 13.96 21.61 0.30 -56.25 16
23 Si 0.97 46.72 28.62 68.60 1.96 48.68 16
24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16
25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
26 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16
27 C -0.24 -10.89 9.13 22.39 0.20 -10.69 16
28 C -0.08 -2.77 9.66 22.25 0.21 -2.55 16
29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16
33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
34 H 0.05 1.17 6.57 -2.38 -0.02 1.15 16
35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16
36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
38 H 0.07 1.63 6.18 -2.38 -0.01 1.61 16
39 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16
40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
43 H 0.05 0.76 7.09 -2.39 -0.02 0.74 16
44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
45 H 0.35 4.64 8.04 -89.69 -0.72 3.92 16
46 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
47 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
48 H 0.08 0.95 8.03 -2.38 -0.02 0.93 16
49 H 0.15 3.92 7.70 -2.91 -0.02 3.90 16
50 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16
51 H 0.28 15.91 8.31 -92.71 -0.77 15.13 16
52 H 0.10 5.17 5.72 -2.91 -0.02 5.15 16
53 H 0.13 3.88 8.03 -2.91 -0.02 3.86 16
Total: -1.00 -66.33 416.91 5.26 -61.07
By element:
Atomic # 1 Polarization: 27.30 SS G_CDS: 0.13 Total: 27.44 kcal
Atomic # 6 Polarization: -58.03 SS G_CDS: 5.30 Total: -52.73 kcal
Atomic # 7 Polarization: -68.32 SS G_CDS: -1.94 Total: -70.26 kcal
Atomic # 8 Polarization: -14.01 SS G_CDS: -0.19 Total: -14.21 kcal
Atomic # 14 Polarization: 46.72 SS G_CDS: 1.96 Total: 48.68 kcal
Total: -66.33 5.26 -61.07 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037231669.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.439 kcal
(2) G-P(sol) polarization free energy of solvation -66.335 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.896 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.071 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.632 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds