Wall clock time and date at job start Tue Mar 31 2020 13:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86808 * 119.99826 * 2 1 4 4 H 1.48498 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47173 * 299.99849 * 3 2 1 6 6 H 1.48498 * 109.46990 * 60.00377 * 3 2 1 7 7 C 1.38796 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99837 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99814 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47092 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99717 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00051 * 180.27840 * 11 10 9 14 14 C 1.40142 * 120.00138 * 175.10964 * 13 11 10 15 15 C 1.38838 * 119.99028 * 214.81545 * 14 13 11 16 16 C 1.38183 * 120.01452 * 179.76022 * 15 14 13 17 17 Cl 1.73598 * 120.00742 * 180.27485 * 16 15 14 18 18 C 1.38940 * 119.98430 * 0.53414 * 16 15 14 19 19 N 1.40043 * 120.00886 * 179.69660 * 18 16 15 20 20 C 1.38935 * 119.97835 * 359.72067 * 18 16 15 21 21 Cl 1.73603 * 120.00549 * 179.97438 * 20 18 16 22 22 C 1.38180 * 119.98904 * 0.02562 * 20 18 16 23 23 H 0.97005 * 119.99832 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47093 * 60.00330 * 10 9 7 25 25 H 1.09000 * 109.47518 * 300.00078 * 10 9 7 26 26 H 0.97000 * 119.99862 * 355.10513 * 13 11 10 27 27 H 1.08011 * 119.99509 * 0.02562 * 15 14 13 28 28 H 0.97004 * 119.99822 * 180.02562 * 19 18 16 29 29 H 0.97002 * 120.00203 * 0.02562 * 19 18 16 30 30 H 1.08002 * 119.99329 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8913 -0.0021 11 6 1.9874 -5.3027 -0.0017 12 8 0.7910 -5.5022 -0.0009 13 7 2.8441 -6.3431 0.0029 14 6 2.3558 -7.6525 0.1068 15 6 3.0801 -8.6100 0.8040 16 6 2.5966 -9.9001 0.9110 17 17 3.4989 -11.0954 1.7889 18 6 1.3908 -10.2417 0.3111 19 7 0.9035 -11.5506 0.4138 20 6 0.6690 -9.2845 -0.3910 21 17 -0.8374 -9.7107 -1.1414 22 6 1.1508 -7.9934 -0.4929 23 1 -0.4850 0.8401 0.0004 24 1 3.1251 -3.7317 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 3.7988 -6.1855 -0.0657 27 1 4.0195 -8.3455 1.2667 28 1 0.0618 -11.7890 -0.0054 29 1 1.4076 -12.2188 0.9040 30 1 0.5895 -7.2492 -1.0383 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058822766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:52 Heat of formation + Delta-G solvation = -24.129017 kcal Electronic energy + Delta-G solvation = -18769.478761 eV Core-core repulsion = 15356.472147 eV Total energy + Delta-G solvation = -3413.006614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 319.989 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52358 -38.91827 -36.93012 -36.47676 -35.41675 -33.39891 -32.46987 -30.80873 -29.83833 -27.38581 -25.51834 -23.48961 -22.55374 -20.54520 -18.41041 -17.78865 -17.43593 -17.28417 -16.35601 -15.33922 -15.11078 -14.83872 -14.63481 -14.36622 -14.34089 -14.09140 -13.52611 -13.34505 -12.63360 -12.51920 -12.35539 -12.00372 -11.42069 -11.40101 -11.28638 -11.15186 -11.09576 -11.06144 -10.79764 -9.86674 -9.62633 -9.48544 -9.11089 -8.90301 -8.30517 -7.53397 -6.55792 -6.25871 -3.97231 0.83215 1.08777 1.60687 2.15951 2.80228 2.87301 3.19549 3.24557 3.29216 3.42111 3.43213 3.59121 4.15761 4.60433 4.81671 4.92664 5.03382 5.09824 5.24847 5.46757 5.56298 5.72485 5.76969 6.01816 6.02995 6.11409 6.69210 6.96149 7.34693 7.42703 7.56264 8.31197 8.34833 9.19836 10.81534 Molecular weight = 319.99amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.002732 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.389603 B =10246.326689 C =11258.874229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.056 6.056 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.497 6.497 13 N -0.675 5.675 14 C 0.123 3.877 15 C -0.085 4.085 16 C -0.090 4.090 17 Cl -0.063 7.063 18 C 0.222 3.778 19 N -0.867 5.867 20 C -0.087 4.087 21 Cl -0.057 7.057 22 C -0.057 4.057 23 H 0.268 0.732 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.412 0.588 27 H 0.142 0.858 28 H 0.403 0.597 29 H 0.402 0.598 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.976 -23.230 0.349 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.369 6.369 13 N -0.323 5.323 14 C 0.026 3.974 15 C -0.107 4.107 16 C -0.122 4.122 17 Cl -0.034 7.034 18 C 0.114 3.886 19 N -0.409 5.409 20 C -0.119 4.119 21 Cl -0.028 7.028 22 C -0.078 4.078 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.248 0.752 27 H 0.160 0.840 28 H 0.234 0.766 29 H 0.232 0.768 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.766 -23.493 0.368 23.974 hybrid contribution 2.261 0.863 0.089 2.422 sum 7.027 -22.630 0.457 23.700 Atomic orbital electron populations 1.70020 1.05961 1.27442 1.46758 1.24997 0.95036 0.99080 0.94458 0.86106 0.79581 0.81817 0.77930 1.19586 1.20549 1.20548 1.22894 0.94958 0.91504 1.59086 0.90770 1.85441 1.04422 0.96366 1.96753 1.23539 1.07006 0.94443 1.05401 1.20568 0.86499 0.86276 0.74702 1.90709 1.15250 1.85070 1.45853 1.43553 1.10996 1.03118 1.74647 1.17129 0.95512 0.84936 0.99800 1.20613 1.01313 0.90629 0.98154 1.19694 0.94661 0.91475 1.06381 1.98343 1.73802 1.56426 1.74840 1.17020 0.91192 0.86038 0.94387 1.42623 1.27864 1.07875 1.62559 1.19929 0.91634 0.94077 1.06253 1.98354 1.30627 1.93119 1.80745 1.21197 0.95538 0.94159 0.96910 0.92171 0.88713 0.88728 0.75241 0.84031 0.76627 0.76754 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.66 13.22 55.49 0.73 -24.92 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 10 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 11 C 0.53 9.18 7.69 -10.98 -0.08 9.10 16 12 O -0.50 -10.40 13.30 5.55 0.07 -10.32 16 13 N -0.68 -8.49 5.34 -9.82 -0.05 -8.54 16 14 C 0.12 1.56 6.30 -83.61 -0.53 1.03 16 15 C -0.09 -0.89 9.74 -39.38 -0.38 -1.28 16 16 C -0.09 -0.93 6.33 -39.34 -0.25 -1.18 16 17 Cl -0.06 -0.54 27.58 -51.86 -1.43 -1.98 16 18 C 0.22 2.38 6.75 -83.59 -0.56 1.82 16 19 N -0.87 -7.07 9.01 32.49 0.29 -6.78 16 20 C -0.09 -1.07 6.33 -39.34 -0.25 -1.32 16 21 Cl -0.06 -0.65 27.58 -51.86 -1.43 -2.08 16 22 C -0.06 -0.79 8.48 -39.38 -0.33 -1.13 16 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 25 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 26 H 0.41 3.67 8.82 -40.82 -0.36 3.31 16 27 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 28 H 0.40 2.92 7.50 -40.82 -0.31 2.62 16 29 H 0.40 2.70 7.50 -40.82 -0.31 2.40 16 30 H 0.16 2.57 6.22 -52.49 -0.33 2.24 16 LS Contribution 310.76 15.07 4.68 4.68 Total: -1.00 -32.53 310.76 -8.45 -40.98 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -2.11 Total: 4.84 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.97 Total: -8.17 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.97 Total: -40.25 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -2.86 Total: -4.06 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.53 -8.45 -40.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058822766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.851 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds