Wall clock time and date at job start Tue Mar 31 2020 13:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86808 * 119.99826 * 2 1 4 4 H 1.48498 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47173 * 299.99849 * 3 2 1 6 6 H 1.48498 * 109.46990 * 60.00377 * 3 2 1 7 7 C 1.38796 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99837 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99814 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47092 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99717 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00051 * 180.27840 * 11 10 9 14 14 C 1.40142 * 120.00138 * 175.10964 * 13 11 10 15 15 C 1.38838 * 119.99028 * 214.81545 * 14 13 11 16 16 C 1.38183 * 120.01452 * 179.76022 * 15 14 13 17 17 Cl 1.73598 * 120.00742 * 180.27485 * 16 15 14 18 18 C 1.38940 * 119.98430 * 0.53414 * 16 15 14 19 19 N 1.40043 * 120.00886 * 179.69660 * 18 16 15 20 20 C 1.38935 * 119.97835 * 359.72067 * 18 16 15 21 21 Cl 1.73603 * 120.00549 * 179.97438 * 20 18 16 22 22 C 1.38180 * 119.98904 * 0.02562 * 20 18 16 23 23 H 0.97005 * 119.99832 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47093 * 60.00330 * 10 9 7 25 25 H 1.09000 * 109.47518 * 300.00078 * 10 9 7 26 26 H 0.97000 * 119.99862 * 355.10513 * 13 11 10 27 27 H 1.08011 * 119.99509 * 0.02562 * 15 14 13 28 28 H 0.97004 * 119.99822 * 180.02562 * 19 18 16 29 29 H 0.97002 * 120.00203 * 0.02562 * 19 18 16 30 30 H 1.08002 * 119.99329 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8913 -0.0021 11 6 1.9874 -5.3027 -0.0017 12 8 0.7910 -5.5022 -0.0009 13 7 2.8441 -6.3431 0.0029 14 6 2.3558 -7.6525 0.1068 15 6 3.0801 -8.6100 0.8040 16 6 2.5966 -9.9001 0.9110 17 17 3.4989 -11.0954 1.7889 18 6 1.3908 -10.2417 0.3111 19 7 0.9035 -11.5506 0.4138 20 6 0.6690 -9.2845 -0.3910 21 17 -0.8374 -9.7107 -1.1414 22 6 1.1508 -7.9934 -0.4929 23 1 -0.4850 0.8401 0.0004 24 1 3.1251 -3.7317 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 3.7988 -6.1855 -0.0657 27 1 4.0195 -8.3455 1.2667 28 1 0.0618 -11.7890 -0.0054 29 1 1.4076 -12.2188 0.9040 30 1 0.5895 -7.2492 -1.0383 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058822766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:52 Heat of formation + Delta-G solvation = -46.464792 kcal Electronic energy + Delta-G solvation = -18770.447313 eV Core-core repulsion = 15356.472147 eV Total energy + Delta-G solvation = -3413.975166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 319.989 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.61002 -40.01501 -37.76363 -37.40394 -36.39212 -34.56922 -34.42884 -31.71483 -31.18848 -28.45188 -27.59741 -24.43462 -23.53686 -21.76481 -19.95445 -19.06738 -18.49228 -18.19160 -17.61017 -16.86186 -16.56458 -16.32765 -15.72975 -15.52770 -15.31273 -15.21283 -14.87400 -14.55244 -14.31198 -13.69509 -13.34917 -13.14481 -12.99534 -12.90603 -12.60123 -12.36917 -12.20246 -12.16074 -12.00974 -11.70367 -11.14241 -10.97812 -10.52965 -10.25163 -9.81228 -8.65016 -8.40579 -8.33107 -6.10495 -0.06806 0.14330 0.74940 1.25037 1.29949 1.43070 1.47894 1.53233 1.59176 2.15743 2.28514 2.48137 2.68934 3.01624 3.30978 3.74129 3.81187 4.01979 4.13091 4.29277 4.34084 4.53451 4.61273 4.83344 5.05643 5.08855 5.44847 5.66028 6.18997 6.22078 6.37873 6.70934 7.08884 7.12502 8.76053 Molecular weight = 319.99amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.002732 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.389603 B =10246.326689 C =11258.874229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.148 6.148 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.541 6.541 13 N -0.650 5.650 14 C 0.103 3.897 15 C -0.067 4.067 16 C -0.095 4.095 17 Cl -0.042 7.042 18 C 0.228 3.772 19 N -0.855 5.855 20 C -0.101 4.101 21 Cl -0.057 7.057 22 C -0.074 4.074 23 H 0.270 0.730 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.431 0.569 27 H 0.171 0.829 28 H 0.409 0.591 29 H 0.412 0.588 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.757 -24.383 1.020 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.079 5.921 10 C -0.279 4.279 11 C 0.322 3.678 12 O -0.417 6.417 13 N -0.298 5.298 14 C 0.006 3.994 15 C -0.088 4.088 16 C -0.128 4.128 17 Cl -0.013 7.013 18 C 0.119 3.881 19 N -0.397 5.397 20 C -0.134 4.134 21 Cl -0.028 7.028 22 C -0.095 4.095 23 H 0.079 0.921 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.271 0.729 27 H 0.188 0.812 28 H 0.240 0.760 29 H 0.243 0.757 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.598 -24.715 1.043 25.877 hybrid contribution 1.440 0.965 -0.097 1.736 sum 9.038 -23.750 0.946 25.429 Atomic orbital electron populations 1.70186 1.07966 1.28492 1.48167 1.26108 0.95934 1.03305 0.93847 0.84920 0.78727 0.76459 0.77937 1.17871 1.20124 1.20119 1.23242 0.95433 0.91908 1.58567 0.89676 1.85624 1.10223 0.99192 1.97067 1.23354 1.03822 0.93231 1.07506 1.20277 0.86221 0.86618 0.74670 1.90712 1.17189 1.85551 1.48253 1.43120 1.11387 1.02273 1.73057 1.17176 0.95847 0.85002 1.01357 1.20815 1.01597 0.89889 0.96515 1.19809 0.94645 0.92041 1.06257 1.98356 1.73201 1.55498 1.74255 1.17080 0.91094 0.86524 0.93432 1.42638 1.28006 1.07108 1.61936 1.19934 0.92103 0.94067 1.07277 1.98346 1.30644 1.93015 1.80821 1.21050 0.96291 0.94355 0.97814 0.92066 0.86501 0.86472 0.72875 0.81187 0.75998 0.75653 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 42.85 29.55 68.60 2.03 44.88 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.13 9.50 67.95 0.65 -29.49 16 8 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -7.93 20.57 -56.49 -1.16 -9.09 16 10 C -0.13 -4.68 6.16 71.24 0.44 -4.24 16 11 C 0.53 18.32 7.69 87.66 0.67 19.00 16 12 O -0.54 -23.48 13.30 -3.06 -0.04 -23.52 16 13 N -0.65 -15.31 5.34 -303.37 -1.62 -16.93 16 14 C 0.10 2.47 6.30 38.10 0.24 2.71 16 15 C -0.07 -1.22 9.74 22.40 0.22 -1.00 16 16 C -0.09 -1.73 6.33 22.42 0.14 -1.59 16 17 Cl -0.04 -0.60 27.58 -2.72 -0.08 -0.67 16 18 C 0.23 4.53 6.75 38.16 0.26 4.79 16 19 N -0.85 -12.27 9.01 -51.11 -0.46 -12.73 16 20 C -0.10 -2.47 6.33 22.42 0.14 -2.33 16 21 Cl -0.06 -1.31 27.58 -2.72 -0.08 -1.38 16 22 C -0.07 -2.08 8.48 22.40 0.19 -1.89 16 23 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 24 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 25 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 26 H 0.43 6.44 8.82 -92.71 -0.82 5.63 16 27 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.41 5.26 7.50 -92.71 -0.70 4.57 16 29 H 0.41 4.49 7.50 -92.71 -0.70 3.80 16 30 H 0.13 4.48 6.22 -2.91 -0.02 4.47 16 Total: -1.00 -73.04 310.76 1.33 -71.71 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -0.96 Total: 15.59 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 3.41 Total: -12.86 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.80 Total: -84.65 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.04 Total: -23.52 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.09 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.15 Total: -2.06 kcal Total: -73.04 1.33 -71.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058822766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.243 kcal (2) G-P(sol) polarization free energy of solvation -73.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds