Wall clock time and date at job start Tue Mar 31 2020 12:38:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.47357 * 2 1
4 4 O 1.42902 * 109.47002 * 119.99975 * 2 1 3
5 5 C 1.35899 * 116.99951 * 157.45511 * 4 2 1
6 6 C 1.38746 * 120.05686 * 356.50108 * 5 4 2
7 7 C 1.38128 * 119.94399 * 179.69866 * 6 5 4
8 8 C 1.38290 * 120.05438 * 0.59982 * 7 6 5
9 9 C 1.38239 * 120.11077 * 359.67757 * 8 7 6
10 10 C 1.50702 * 119.97449 * 180.02562 * 9 8 7
11 11 N 1.46897 * 109.47430 * 269.98168 * 10 9 8
12 12 C 1.46907 * 111.00102 * 75.30798 * 11 10 9
13 13 C 1.46893 * 111.00041 * 199.27021 * 11 10 9
14 14 C 1.52998 * 109.47411 * 87.43246 * 13 11 10
15 15 C 1.53005 * 109.46917 * 300.05077 * 14 13 11
16 16 C 1.52998 * 109.47228 * 60.04895 * 14 13 11
17 17 C 1.53007 * 109.47079 * 180.02562 * 14 13 11
18 18 C 1.50701 * 109.46753 * 180.02562 * 17 14 13
19 19 H 1.08000 * 120.00131 * 359.97438 * 18 17 14
20 20 C 1.37881 * 119.99717 * 180.02562 * 18 17 14
21 21 N 1.31514 * 119.99704 * 359.97438 * 20 18 17
22 22 Si 1.86798 * 120.00059 * 179.97438 * 20 18 17
23 23 H 1.48498 * 109.46885 * 89.99793 * 22 20 18
24 24 H 1.48489 * 109.47071 * 209.99754 * 22 20 18
25 25 H 1.48501 * 109.46816 * 330.00146 * 22 20 18
26 26 C 1.38171 * 120.05774 * 0.02562 * 9 8 7
27 27 H 1.08995 * 109.46865 * 300.00306 * 1 2 3
28 28 H 1.08998 * 109.46888 * 59.99740 * 1 2 3
29 29 H 1.08993 * 109.47067 * 179.97438 * 1 2 3
30 30 H 1.08998 * 109.47318 * 239.99506 * 2 1 3
31 31 H 1.08998 * 109.47333 * 299.99987 * 3 2 1
32 32 H 1.09004 * 109.46916 * 59.99694 * 3 2 1
33 33 H 1.09000 * 109.47181 * 179.97438 * 3 2 1
34 34 H 1.07995 * 120.02989 * 359.97438 * 6 5 4
35 35 H 1.08002 * 119.97389 * 180.30443 * 7 6 5
36 36 H 1.08002 * 119.94510 * 179.70090 * 8 7 6
37 37 H 1.09001 * 109.46821 * 29.98126 * 10 9 8
38 38 H 1.08999 * 109.47339 * 149.97593 * 10 9 8
39 39 H 1.08996 * 109.46628 * 54.76238 * 12 11 10
40 40 H 1.08999 * 109.46542 * 174.75794 * 12 11 10
41 41 H 1.08994 * 109.47336 * 294.75824 * 12 11 10
42 42 H 1.09003 * 109.46855 * 207.43357 * 13 11 10
43 43 H 1.08996 * 109.47484 * 327.42779 * 13 11 10
44 44 H 1.08995 * 109.46893 * 68.57803 * 15 14 13
45 45 H 1.09000 * 109.46710 * 188.57950 * 15 14 13
46 46 H 1.08994 * 109.46893 * 308.57532 * 15 14 13
47 47 H 1.08998 * 109.47150 * 65.11921 * 16 14 13
48 48 H 1.08999 * 109.47483 * 185.11991 * 16 14 13
49 49 H 1.09002 * 109.47107 * 305.12284 * 16 14 13
50 50 H 1.09000 * 109.46719 * 299.99463 * 17 14 13
51 51 H 1.08998 * 109.47041 * 59.99806 * 17 14 13
52 52 H 0.97004 * 119.99815 * 180.02562 * 21 20 18
53 53 H 1.07996 * 120.02968 * 180.02562 * 26 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 8 2.0063 -0.6736 1.1668
5 6 3.2664 -1.1802 1.1156
6 6 4.0020 -1.0959 -0.0577
7 6 5.2848 -1.6060 -0.1053
8 6 5.8314 -2.2113 1.0115
9 6 5.0983 -2.3015 2.1800
10 6 5.6971 -2.9613 3.3955
11 7 5.3840 -4.3964 3.3780
12 6 6.2149 -5.1047 2.3952
13 6 5.5342 -4.9842 4.7158
14 6 4.2231 -4.8329 5.4896
15 6 3.8762 -3.3484 5.6198
16 6 3.1019 -5.5547 4.7395
17 6 4.3799 -5.4447 6.8833
18 6 3.0882 -5.2962 7.6452
19 1 2.2404 -4.8133 7.1820
20 6 2.9891 -5.7758 8.9341
21 7 4.0216 -6.3633 9.4983
22 14 1.3883 -5.5911 9.8789
23 1 0.5302 -6.7784 9.6358
24 1 1.6803 -5.4803 11.3306
25 1 0.6817 -4.3677 9.4212
26 6 3.8170 -1.7874 2.2346
27 1 -0.3633 0.5139 0.8899
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 1.8934 -0.5139 -0.8899
31 1 1.6768 1.9564 -0.8900
32 1 1.6767 1.9563 0.8900
33 1 3.1301 1.4424 0.0005
34 1 3.5738 -0.6280 -0.9318
35 1 5.8597 -1.5363 -1.0170
36 1 6.8328 -2.6138 0.9709
37 1 6.7786 -2.8252 3.3869
38 1 5.2813 -2.5095 4.2961
39 1 7.2670 -4.9033 2.5967
40 1 6.0296 -6.1763 2.4679
41 1 5.9646 -4.7599 1.3920
42 1 5.7809 -6.0419 4.6222
43 1 6.3332 -4.4708 5.2507
44 1 3.6155 -2.9489 4.6398
45 1 3.0301 -3.2311 6.2969
46 1 4.7359 -2.8078 6.0156
47 1 3.3046 -6.6256 4.7259
48 1 2.1519 -5.3711 5.2415
49 1 3.0503 -5.1817 3.7166
50 1 4.6267 -6.5023 6.7900
51 1 5.1787 -4.9308 7.4179
52 1 3.9518 -6.7011 10.4049
53 1 3.2448 -1.8579 3.1479
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000093864524.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:38:39
Heat of formation + Delta-G solvation = -37.178715 kcal
Electronic energy + Delta-G solvation = -27771.446876 eV
Core-core repulsion = 24221.436582 eV
Total energy + Delta-G solvation = -3550.010294 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 319.225 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.28611 -39.97192 -38.51613 -36.40582 -34.29629 -34.08073 -32.53006 -30.64965
-29.24643 -28.52893 -28.12670 -27.67957 -27.25108 -25.28924 -23.84440 -23.44948
-22.52617 -20.97042 -19.56516 -18.92764 -18.30096 -17.13972 -16.90650 -16.62650
-16.47827 -16.08687 -16.04125 -15.84418 -15.03628 -14.96909 -14.68664 -14.42682
-14.34792 -14.17667 -13.93520 -13.68561 -13.54955 -13.38618 -13.19787 -13.09215
-12.86786 -12.79924 -12.68829 -12.65714 -12.57560 -12.36114 -12.29228 -12.17661
-12.04614 -11.97244 -11.71318 -11.65744 -11.39976 -11.22102 -10.84306 -10.62612
-10.48846 -9.74782 -9.16979 -9.00742 -8.12940 -6.19172 0.41474 0.58009
1.40584 1.40938 1.51787 2.30863 2.44293 2.75995 3.20820 3.29914
3.82809 3.86306 3.96182 4.04265 4.07979 4.09895 4.17218 4.27312
4.32510 4.40418 4.47388 4.49334 4.57648 4.65381 4.70318 4.74960
4.78092 4.82420 4.83861 4.88425 4.90584 4.98290 5.02667 5.07900
5.09492 5.15071 5.21306 5.22859 5.26796 5.28686 5.46642 5.53703
5.55091 5.55890 5.61221 5.67063 5.74943 5.88393 5.93336 5.95460
6.16584 6.26231 6.41092 6.59729 6.95543 7.47660 8.99331
Molecular weight = 319.23amu
Principal moments of inertia in cm(-1)
A = 0.013146 B = 0.003156 C = 0.002660
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2129.392539 B = 8869.200958 C =10522.207676
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.067 3.933
3 C -0.175 4.175
4 O -0.334 6.334
5 C 0.119 3.881
6 C -0.214 4.214
7 C -0.079 4.079
8 C -0.156 4.156
9 C -0.032 4.032
10 C 0.076 3.924
11 N -0.535 5.535
12 C 0.025 3.975
13 C 0.075 3.925
14 C -0.047 4.047
15 C -0.123 4.123
16 C -0.104 4.104
17 C 0.040 3.960
18 C -0.512 4.512
19 H 0.062 0.938
20 C -0.003 4.003
21 N -0.937 5.937
22 Si 0.953 3.047
23 H -0.275 1.275
24 H -0.285 1.285
25 H -0.265 1.265
26 C -0.158 4.158
27 H 0.059 0.941
28 H 0.101 0.899
29 H 0.057 0.943
30 H 0.084 0.916
31 H 0.094 0.906
32 H 0.057 0.943
33 H 0.056 0.944
34 H 0.147 0.853
35 H 0.151 0.849
36 H 0.135 0.865
37 H 0.052 0.948
38 H 0.088 0.912
39 H 0.032 0.968
40 H 0.064 0.936
41 H 0.076 0.924
42 H 0.063 0.937
43 H 0.031 0.969
44 H 0.066 0.934
45 H 0.039 0.961
46 H 0.039 0.961
47 H 0.030 0.970
48 H 0.034 0.966
49 H 0.063 0.937
50 H -0.014 1.014
51 H -0.015 1.015
52 H 0.260 0.740
53 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.857 13.722 -25.240 28.742
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.011 3.989
3 C -0.232 4.232
4 O -0.249 6.249
5 C 0.074 3.926
6 C -0.233 4.233
7 C -0.096 4.096
8 C -0.175 4.175
9 C -0.033 4.033
10 C -0.051 4.051
11 N -0.258 5.258
12 C -0.123 4.123
13 C -0.052 4.052
14 C -0.047 4.047
15 C -0.180 4.180
16 C -0.161 4.161
17 C 0.003 3.997
18 C -0.550 4.550
19 H 0.080 0.920
20 C -0.200 4.200
21 N -0.579 5.579
22 Si 0.779 3.221
23 H -0.201 1.201
24 H -0.211 1.211
25 H -0.189 1.189
26 C -0.177 4.177
27 H 0.078 0.922
28 H 0.120 0.880
29 H 0.077 0.923
30 H 0.102 0.898
31 H 0.113 0.887
32 H 0.076 0.924
33 H 0.076 0.924
34 H 0.164 0.836
35 H 0.169 0.831
36 H 0.153 0.847
37 H 0.071 0.929
38 H 0.106 0.894
39 H 0.050 0.950
40 H 0.083 0.917
41 H 0.095 0.905
42 H 0.081 0.919
43 H 0.049 0.951
44 H 0.085 0.915
45 H 0.058 0.942
46 H 0.058 0.942
47 H 0.049 0.951
48 H 0.053 0.947
49 H 0.081 0.919
50 H 0.004 0.996
51 H 0.004 0.996
52 H 0.068 0.932
53 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges 0.277 13.586 -25.072 28.518
hybrid contribution 0.231 -0.224 1.414 1.450
sum 0.508 13.363 -23.658 27.175
Atomic orbital electron populations
1.21883 0.91614 1.03079 1.03900 1.22719 0.96174 0.92974 0.87004
1.22345 1.01738 0.95360 1.03795 1.86143 1.27657 1.69729 1.41326
1.19095 0.84649 0.94343 0.94491 1.21442 0.96808 1.07583 0.97458
1.21210 0.94316 0.95270 0.98847 1.21151 1.01035 1.02681 0.92643
1.19534 0.92889 0.95439 0.95457 1.21469 0.98367 0.88375 0.96885
1.61815 1.55663 1.01916 1.06396 1.22507 0.94590 0.98836 0.96327
1.22084 0.96145 0.98536 0.88463 1.20414 0.94579 0.95633 0.94115
1.21902 1.00201 0.95348 1.00535 1.21460 0.97296 0.98242 0.99123
1.19017 0.95265 0.93716 0.91744 1.21602 0.98935 1.36112 0.98377
0.91986 1.25881 0.99554 0.95472 0.99054 1.70103 1.31912 1.41130
1.14718 0.85616 0.80063 0.78807 0.77626 1.20103 1.21083 1.18921
1.20388 0.96129 1.03358 0.97813 0.92159 0.88005 0.92343 0.89831
0.88700 0.92365 0.92450 0.83584 0.83089 0.84736 0.92941 0.89379
0.94967 0.91685 0.90504 0.91894 0.95094 0.91495 0.94167 0.94181
0.95114 0.94716 0.91857 0.99581 0.99643 0.93173 0.86857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.98 9.56 71.98 0.69 -1.29 16
2 C 0.07 1.07 2.87 30.60 0.09 1.16 16
3 C -0.18 -2.30 9.24 71.98 0.67 -1.64 16
4 O -0.33 -8.27 9.81 -92.42 -0.91 -9.17 16
5 C 0.12 2.97 6.53 22.51 0.15 3.11 16
6 C -0.21 -4.11 8.31 22.37 0.19 -3.92 16
7 C -0.08 -1.36 10.04 22.26 0.22 -1.14 16
8 C -0.16 -3.15 8.37 22.28 0.19 -2.96 16
9 C -0.03 -0.82 5.13 -19.88 -0.10 -0.92 16
10 C 0.08 2.03 4.16 85.56 0.36 2.39 16
11 N -0.53 -15.53 3.56 -927.08 -3.30 -18.83 16
12 C 0.03 0.59 9.21 127.69 1.18 1.77 16
13 C 0.08 2.64 4.23 86.30 0.37 3.01 16
14 C -0.05 -1.94 0.60 -52.18 -0.03 -1.97 16
15 C -0.12 -4.82 6.71 71.98 0.48 -4.34 16
16 C -0.10 -4.20 8.03 71.98 0.58 -3.63 16
17 C 0.04 2.12 4.04 29.85 0.12 2.25 16
18 C -0.51 -29.09 7.59 25.60 0.19 -28.90 16
19 H 0.06 3.43 5.73 -2.91 -0.02 3.41 16
20 C 0.00 -0.17 5.46 84.66 0.46 0.29 16
21 N -0.94 -58.04 13.29 21.45 0.28 -57.75 16
22 Si 0.95 45.50 29.54 68.60 2.03 47.52 16
23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
24 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16
25 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16
26 C -0.16 -4.40 9.54 22.37 0.21 -4.18 16
27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
28 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16
29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
30 H 0.08 1.12 6.03 -2.39 -0.01 1.11 16
31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16
32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16
33 H 0.06 0.82 7.27 -2.39 -0.02 0.80 16
34 H 0.15 2.06 5.67 -2.91 -0.02 2.04 16
35 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16
36 H 0.13 2.21 8.03 -2.91 -0.02 2.19 16
37 H 0.05 1.26 7.84 -2.39 -0.02 1.25 16
38 H 0.09 2.62 4.23 -2.39 -0.01 2.61 16
39 H 0.03 0.68 7.98 -2.39 -0.02 0.66 16
40 H 0.06 1.54 7.81 -2.39 -0.02 1.52 16
41 H 0.08 1.63 6.77 -2.39 -0.02 1.62 16
42 H 0.06 2.22 7.55 -2.39 -0.02 2.20 16
43 H 0.03 1.09 7.82 -2.39 -0.02 1.07 16
44 H 0.07 2.34 4.49 -2.39 -0.01 2.33 16
45 H 0.04 1.74 6.38 -2.39 -0.02 1.72 16
46 H 0.04 1.51 7.30 -2.39 -0.02 1.49 16
47 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16
48 H 0.03 1.49 6.79 -2.39 -0.02 1.47 16
49 H 0.06 2.33 7.45 -2.39 -0.02 2.31 16
50 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16
51 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
52 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16
53 H 0.11 3.51 6.23 -2.91 -0.02 3.49 16
Total: -1.00 -67.34 400.02 4.97 -62.38
By element:
Atomic # 1 Polarization: 15.90 SS G_CDS: 0.87 Total: 16.77 kcal
Atomic # 6 Polarization: -46.91 SS G_CDS: 6.00 Total: -40.91 kcal
Atomic # 7 Polarization: -73.56 SS G_CDS: -3.02 Total: -76.58 kcal
Atomic # 8 Polarization: -8.27 SS G_CDS: -0.91 Total: -9.17 kcal
Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal
Total: -67.34 4.97 -62.38 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000093864524.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.199 kcal
(2) G-P(sol) polarization free energy of solvation -67.344 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.179 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds