Wall clock time and date at job start Tue Mar 31 2020 13:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38342 * 120.75300 * 2 1 4 4 C 1.39091 * 119.10923 * 179.97438 * 3 2 1 5 5 N 1.39052 * 119.69036 * 180.25505 * 4 3 2 6 6 S 1.65600 * 119.99603 * 179.72625 * 5 4 3 7 7 O 1.42100 * 106.40008 * 178.54014 * 6 5 4 8 8 O 1.42099 * 106.40505 * 311.46407 * 6 5 4 9 9 C 1.76199 * 107.21801 * 65.00216 * 6 5 4 10 10 H 1.07996 * 120.00176 * 359.97438 * 9 6 5 11 11 C 1.37878 * 120.00039 * 179.97438 * 9 6 5 12 12 N 1.31518 * 119.99902 * 179.97438 * 11 9 6 13 13 Si 1.86805 * 119.99997 * 0.02562 * 11 9 6 14 14 H 1.48502 * 109.46934 * 89.99946 * 13 11 9 15 15 H 1.48500 * 109.46933 * 209.99624 * 13 11 9 16 16 H 1.48499 * 109.46872 * 330.00040 * 13 11 9 17 17 N 1.32414 * 120.61003 * 359.97438 * 4 3 2 18 18 C 1.31939 * 121.63383 * 0.02562 * 17 4 3 19 19 C 1.38147 * 120.84464 * 0.02562 * 18 17 4 20 20 Br 1.89095 * 120.34936 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47575 * 270.02075 * 1 2 3 22 22 H 1.09004 * 109.46932 * 30.02635 * 1 2 3 23 23 H 1.08998 * 109.47345 * 150.02030 * 1 2 3 24 24 H 1.07996 * 120.44601 * 0.02562 * 3 2 1 25 25 H 0.96999 * 120.00116 * 359.73207 * 5 4 3 26 26 H 0.96999 * 119.99821 * 180.02562 * 12 11 9 27 27 H 1.07998 * 119.58150 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2143 1.1889 0.0000 4 6 3.6046 1.1490 0.0005 5 7 4.3278 2.3367 0.0059 6 16 5.9833 2.2980 0.0135 7 8 6.4164 3.6511 -0.0169 8 8 6.3587 1.3845 1.0351 9 6 6.4951 1.5774 -1.5108 10 1 5.7573 1.2606 -2.2330 11 6 7.8376 1.4181 -1.7816 12 7 8.2196 0.8798 -2.9192 13 14 9.1139 1.9655 -0.5322 14 1 9.4201 0.8408 0.3878 15 1 10.3530 2.3784 -1.2388 16 1 8.5830 3.1124 0.2476 17 7 4.2459 -0.0095 0.0016 18 6 3.5982 -1.1590 0.0016 19 6 2.2172 -1.1938 0.0000 20 35 1.3032 -2.8492 0.0008 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3634 -0.8901 -0.5135 24 1 1.6940 2.1353 0.0004 25 1 3.8625 3.1878 0.0054 26 1 9.1640 0.7674 -3.1095 27 1 4.1548 -2.0845 0.0029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094063734.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:36 Heat of formation + Delta-G solvation = -38.929875 kcal Electronic energy + Delta-G solvation = -17063.690250 eV Core-core repulsion = 13994.904972 eV Total energy + Delta-G solvation = -3068.785278 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 319.962 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28341 -35.80295 -35.36443 -34.51870 -33.69733 -32.99828 -31.43332 -28.48058 -27.79637 -26.39354 -23.25498 -21.99572 -19.24735 -17.82796 -17.61996 -16.83936 -15.87909 -15.69418 -15.04355 -14.67962 -14.42370 -13.96758 -13.44614 -13.17524 -12.82253 -12.78970 -12.70576 -12.04049 -11.68974 -11.63162 -11.36479 -10.86514 -10.66950 -10.53377 -10.40552 -10.31475 -9.96661 -9.43780 -9.22714 -9.15540 -9.00292 -8.08280 -6.77326 -5.29341 1.13447 1.29536 1.63326 1.82404 3.07535 3.19434 3.26043 3.72252 3.83631 3.96596 4.51968 4.63082 4.66415 4.84999 4.99146 5.23394 5.31393 5.42313 5.55883 5.66690 5.79386 5.94795 6.15388 6.26266 6.61172 7.19185 7.50189 8.13563 8.24357 8.72225 10.35171 Molecular weight = 319.96amu Principal moments of inertia in cm(-1) A = 0.026511 B = 0.004535 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.898446 B = 6173.398054 C = 6778.290161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.014 3.986 3 C -0.215 4.215 4 C 0.419 3.581 5 N -1.032 6.032 6 S 2.660 3.340 7 O -1.001 7.001 8 O -0.978 6.978 9 C -0.990 4.990 10 H 0.120 0.880 11 C 0.155 3.845 12 N -0.822 5.822 13 Si 0.802 3.198 14 H -0.245 1.245 15 H -0.255 1.255 16 H -0.223 1.223 17 N -0.488 5.488 18 C 0.192 3.808 19 C -0.198 4.198 20 Br -0.047 7.047 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.142 0.858 25 H 0.425 0.575 26 H 0.280 0.720 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.791 -4.889 4.779 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.005 3.995 3 C -0.241 4.241 4 C 0.184 3.816 5 N -0.772 5.772 6 S 2.763 3.237 7 O -0.991 6.991 8 O -0.967 6.967 9 C -1.126 5.126 10 H 0.138 0.862 11 C -0.064 4.064 12 N -0.451 5.451 13 Si 0.622 3.378 14 H -0.168 1.168 15 H -0.179 1.179 16 H -0.146 1.146 17 N -0.204 5.204 18 C 0.031 3.969 19 C -0.282 4.282 20 Br 0.037 6.963 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.160 0.840 25 H 0.259 0.741 26 H 0.091 0.909 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.385 -5.254 5.383 17.125 hybrid contribution -0.262 0.682 -0.331 0.802 sum -15.646 -4.572 5.052 17.066 Atomic orbital electron populations 1.20979 0.89546 1.04005 1.03417 1.19897 0.96755 0.90839 0.92054 1.21388 0.92518 0.98983 1.11226 1.18109 0.88333 0.86199 0.88924 1.53965 1.29097 1.10097 1.84045 1.02081 0.69941 0.74111 0.77592 1.93515 1.77459 1.38448 1.89661 1.93447 1.78474 1.64655 1.60160 1.30027 1.01583 1.57188 1.23764 0.86166 1.24362 0.97435 0.90027 0.94588 1.69981 1.18079 1.35423 1.21639 0.87872 0.84080 0.82819 0.83034 1.16836 1.17926 1.14552 1.67544 1.39040 0.96790 1.16991 1.22571 0.89016 0.95791 0.89504 1.22579 0.95996 0.91808 1.17775 1.96598 1.76819 1.24861 1.98021 0.89937 0.90576 0.90121 0.83997 0.74087 0.90914 0.81365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.63 36.00 0.35 -0.76 15 2 C 0.01 0.18 5.92 -104.34 -0.62 -0.43 15 3 C -0.22 -3.02 9.64 -39.23 -0.38 -3.40 15 4 C 0.42 7.77 7.33 -154.98 -1.14 6.64 15 5 N -1.03 -19.76 5.85 31.13 0.18 -19.58 15 6 S 2.66 66.67 3.87 -107.50 -0.42 66.25 15 7 O -1.00 -26.29 16.02 -57.17 -0.92 -27.21 15 8 O -0.98 -26.41 15.70 -57.17 -0.90 -27.31 15 9 C -0.99 -27.82 9.87 30.60 0.30 -27.51 15 10 H 0.12 3.47 8.06 -52.49 -0.42 3.05 15 11 C 0.16 4.47 5.47 -17.82 -0.10 4.38 15 12 N -0.82 -23.82 13.96 55.43 0.77 -23.04 15 13 Si 0.80 20.64 26.54 -169.99 -4.51 16.12 15 14 H -0.24 -6.18 7.11 56.52 0.40 -5.78 15 15 H -0.26 -6.02 7.11 56.52 0.40 -5.62 15 16 H -0.22 -5.81 5.61 56.52 0.32 -5.49 15 17 N -0.49 -10.10 8.33 -12.41 -0.10 -10.21 15 18 C 0.19 3.24 10.93 -17.54 -0.19 3.05 15 19 C -0.20 -2.80 6.24 -39.36 -0.25 -3.04 15 20 Br -0.05 -0.54 31.96 -68.01 -2.17 -2.71 15 21 H 0.08 0.65 8.14 -51.93 -0.42 0.22 15 22 H 0.08 0.57 8.10 -51.93 -0.42 0.15 15 23 H 0.08 0.70 6.77 -51.93 -0.35 0.35 15 24 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 25 H 0.42 6.23 8.82 -34.47 -0.30 5.93 15 26 H 0.28 7.37 8.31 -40.82 -0.34 7.03 15 27 H 0.17 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 271.39 15.07 4.09 4.09 Total: -1.00 -33.72 271.39 -7.98 -41.70 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -1.99 Total: 2.98 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -2.02 Total: -21.09 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.85 Total: -52.83 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -1.81 Total: -54.51 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.51 Total: 16.12 kcal Atomic # 16 Polarization: 66.67 SS G_CDS: -0.42 Total: 66.25 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -2.17 Total: -2.71 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.72 -7.98 -41.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094063734.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.766 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds