Wall clock time and date at job start Tue Mar 31 2020 12:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47097 * 2 1 4 4 H 1.08996 * 109.46672 * 304.99630 * 3 2 1 5 5 C 1.50700 * 109.46957 * 184.99823 * 3 2 1 6 6 H 1.08002 * 120.00092 * 239.99402 * 5 3 2 7 7 C 1.37875 * 120.00320 * 60.00091 * 5 3 2 8 8 N 1.31516 * 120.00032 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00096 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47534 * 59.99952 * 9 7 5 11 11 H 1.48506 * 109.47330 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47372 * 299.99709 * 9 7 5 13 13 N 1.46496 * 109.46993 * 64.99825 * 3 2 1 14 14 C 1.34779 * 120.00107 * 274.99862 * 13 3 2 15 15 O 1.21284 * 119.99695 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00208 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.47300 * 59.99783 * 16 14 13 18 18 C 1.52997 * 109.46965 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47457 * 300.00135 * 18 17 16 20 20 C 1.53002 * 109.46817 * 60.00169 * 19 18 17 21 21 C 1.53001 * 109.46637 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47346 * 299.99737 * 20 19 18 23 23 C 1.53000 * 109.47233 * 60.00194 * 20 19 18 24 24 C 1.52997 * 109.47060 * 299.99657 * 23 20 19 25 25 C 1.52992 * 109.47482 * 180.02562 * 24 23 20 26 26 C 1.52999 * 109.47317 * 59.99960 * 24 23 20 27 27 C 1.52997 * 109.46910 * 299.99840 * 16 14 13 28 28 H 1.08997 * 109.46850 * 60.00388 * 1 2 3 29 29 H 1.09006 * 109.46852 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47188 * 300.00111 * 1 2 3 31 31 H 1.09004 * 109.47460 * 239.99466 * 2 1 3 32 32 H 1.09006 * 109.47013 * 119.99773 * 2 1 3 33 33 H 0.96996 * 120.00094 * 179.97438 * 8 7 5 34 34 H 0.97006 * 120.00096 * 95.00399 * 13 3 2 35 35 H 1.09000 * 109.47312 * 300.00049 * 17 16 14 36 36 H 1.09004 * 109.46930 * 60.00105 * 17 16 14 37 37 H 1.09001 * 109.46989 * 179.97438 * 18 17 16 38 38 H 1.08993 * 109.47194 * 299.99651 * 19 18 17 39 39 H 1.09002 * 109.46695 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.47508 * 299.99876 * 21 20 19 41 41 H 1.09000 * 109.47437 * 60.00474 * 21 20 19 42 42 H 1.09001 * 109.47109 * 179.97438 * 21 20 19 43 43 H 1.08992 * 109.47554 * 180.02562 * 22 20 19 44 44 H 1.09004 * 109.47108 * 300.00289 * 22 20 19 45 45 H 1.09002 * 109.47398 * 59.99826 * 23 20 19 46 46 H 1.09001 * 109.47194 * 180.02562 * 23 20 19 47 47 H 1.09001 * 109.47066 * 60.00169 * 25 24 23 48 48 H 1.08996 * 109.47747 * 179.97438 * 25 24 23 49 49 H 1.09002 * 109.47103 * 300.00247 * 25 24 23 50 50 H 1.09000 * 109.47486 * 180.02562 * 26 24 23 51 51 H 1.09002 * 109.46716 * 60.00091 * 26 24 23 52 52 H 1.09001 * 109.47375 * 300.00278 * 27 16 14 53 53 H 1.09000 * 109.47140 * 60.00295 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3809 10 1 6.5966 0.1452 -0.2341 11 1 6.3980 0.2156 -2.6496 12 1 6.5005 2.2799 -1.3806 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0365 3.3386 2.6543 17 6 1.0070 4.4833 2.9523 18 6 0.6019 5.1682 4.2591 19 6 -0.8170 5.7245 4.1249 20 6 -1.7874 4.5797 3.8270 21 6 -3.2065 5.1360 3.6935 22 6 -1.3825 3.8948 2.5202 23 6 -1.7440 3.5637 4.9701 24 6 -0.3250 3.0074 5.1043 25 6 -0.2816 1.9910 6.2469 26 6 0.6455 4.1521 5.4021 27 6 0.0804 2.3223 3.7971 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8294 -0.0612 -2.9497 34 1 2.2719 2.1232 1.9978 35 1 2.0180 4.0871 3.0475 36 1 0.9757 5.2074 2.1381 37 1 1.2936 5.9834 4.4716 38 1 -0.8480 6.4484 3.3107 39 1 -1.1056 6.2120 5.0561 40 1 -3.4948 5.6236 4.6247 41 1 -3.2379 5.8600 2.8793 42 1 -3.8978 4.3205 3.4808 43 1 -2.0741 3.0797 2.3077 44 1 -1.4135 4.6187 1.7058 45 1 -2.0325 4.0516 5.9011 46 1 -2.4350 2.7479 4.7576 47 1 -0.9729 1.1755 6.0342 48 1 0.7292 1.5943 6.3422 49 1 -0.5703 2.4785 7.1781 50 1 1.6565 3.7558 5.4973 51 1 0.3570 4.6400 6.3332 52 1 -0.6109 1.5067 3.5848 53 1 1.0914 1.9261 3.8923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094543967.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:54 Heat of formation + Delta-G solvation = -86.889506 kcal Electronic energy + Delta-G solvation = -29919.208991 eV Core-core repulsion = 26367.043076 eV Total energy + Delta-G solvation = -3552.165916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.90021 -38.63418 -35.09404 -34.68841 -33.78255 -32.70521 -32.12443 -30.62669 -27.07546 -26.88688 -26.53399 -26.00803 -25.83933 -23.44875 -22.36871 -21.07085 -19.88013 -19.64469 -19.04619 -17.36637 -16.78609 -15.51142 -15.27413 -14.71846 -14.50394 -14.49641 -14.40237 -14.36559 -14.16700 -13.80922 -13.54616 -13.51829 -12.67897 -12.62596 -12.55184 -12.18226 -12.08125 -11.97753 -11.90514 -11.74981 -11.67453 -11.41614 -11.22124 -10.98756 -10.86447 -10.83761 -10.78702 -10.68093 -10.61109 -10.53911 -10.32259 -10.20056 -10.06791 -9.69081 -9.62543 -9.56790 -9.01116 -8.65869 -8.44793 -7.72729 -6.09443 -4.18716 3.26432 3.31903 3.32891 3.50736 4.10359 4.37102 4.45516 4.49909 4.64126 4.89870 4.97786 5.13615 5.17665 5.19972 5.22052 5.25419 5.34506 5.36694 5.39126 5.56977 5.58238 5.65409 5.69526 5.70510 5.76600 5.81047 5.86004 5.90855 5.94685 6.02955 6.08423 6.12406 6.12793 6.14829 6.20562 6.25432 6.33564 6.42530 6.45560 6.49747 6.53779 6.58662 6.61081 6.70878 7.08304 7.24393 7.41934 7.54268 7.65776 7.78744 7.95031 8.22453 8.75882 8.82939 9.24389 9.49373 10.95757 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.003931 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.111397 B = 7121.154330 C = 7436.883784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.047 0.953 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.550 6.550 16 C -0.072 4.072 17 C -0.100 4.100 18 C -0.084 4.084 19 C -0.101 4.101 20 C -0.060 4.060 21 C -0.139 4.139 22 C -0.077 4.077 23 C -0.094 4.094 24 C -0.057 4.057 25 C -0.141 4.141 26 C -0.101 4.101 27 C -0.092 4.092 28 H 0.048 0.952 29 H 0.021 0.979 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.052 0.948 50 H 0.063 0.937 51 H 0.060 0.940 52 H 0.065 0.935 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 7.727 16.876 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.354 5.354 14 C 0.295 3.705 15 O -0.429 6.429 16 C -0.076 4.076 17 C -0.137 4.137 18 C -0.103 4.103 19 C -0.138 4.138 20 C -0.060 4.060 21 C -0.197 4.197 22 C -0.115 4.115 23 C -0.132 4.132 24 C -0.057 4.057 25 C -0.198 4.198 26 C -0.138 4.138 27 C -0.130 4.130 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.078 0.922 52 H 0.084 0.916 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.837 7.580 15.981 19.772 hybrid contribution 1.374 -0.112 0.161 1.388 sum -7.462 7.468 16.142 19.288 Atomic orbital electron populations 1.21831 0.98404 0.97872 1.01244 1.21923 0.92564 0.99931 1.02118 1.18734 0.94010 0.89111 0.81239 0.93491 1.21203 0.90837 1.38922 1.06188 0.92272 1.24874 0.98457 0.94860 0.95423 1.69887 1.35143 1.37626 1.09337 0.86546 0.85066 0.78276 0.77421 1.20205 1.21162 1.20225 1.46482 1.14747 1.55949 1.18227 1.20241 0.82586 0.78998 0.88631 1.90648 1.51561 1.60053 1.40610 1.20729 0.97046 0.95916 0.93861 1.21531 0.98208 0.96761 0.97247 1.21059 0.96774 0.97424 0.95016 1.21575 0.94202 0.96928 1.01137 1.20518 0.94823 0.95195 0.95494 1.21828 0.95731 1.00811 1.01304 1.21309 0.94230 1.00035 0.95899 1.21601 0.95858 0.98041 0.97656 1.20471 0.95366 0.95060 0.94817 1.21844 1.01894 0.98589 0.97471 1.21578 0.99101 0.95598 0.97550 1.21558 1.01956 0.96836 0.92613 0.93240 0.96028 0.94218 0.88422 0.95176 0.92571 0.78196 0.91370 0.91543 0.91135 0.91992 0.92248 0.92952 0.92641 0.92665 0.91508 0.91471 0.92223 0.92025 0.92675 0.92541 0.92851 0.91849 0.92176 0.91642 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.82 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.81 11.29 55.43 0.63 -24.19 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.71 -14.58 4.81 -54.94 -0.26 -14.84 16 14 C 0.51 10.01 5.05 -10.99 -0.06 9.96 16 15 O -0.55 -12.81 13.12 5.55 0.07 -12.74 16 16 C -0.07 -1.06 0.61 -155.66 -0.10 -1.15 16 17 C -0.10 -1.31 4.37 -26.73 -0.12 -1.43 16 18 C -0.08 -0.89 3.19 -90.62 -0.29 -1.18 16 19 C -0.10 -1.03 4.47 -26.73 -0.12 -1.15 16 20 C -0.06 -0.65 0.77 -154.51 -0.12 -0.77 16 21 C -0.14 -1.35 8.47 37.16 0.31 -1.04 16 22 C -0.08 -1.08 3.04 -26.73 -0.08 -1.16 16 23 C -0.09 -0.96 3.75 -26.73 -0.10 -1.06 16 24 C -0.06 -0.59 0.77 -154.49 -0.12 -0.71 16 25 C -0.14 -1.30 8.47 37.15 0.31 -0.98 16 26 C -0.10 -0.99 4.47 -26.73 -0.12 -1.10 16 27 C -0.09 -1.19 3.65 -26.71 -0.10 -1.29 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.39 7.10 7.38 -40.82 -0.30 6.80 16 35 H 0.07 0.90 7.56 -51.93 -0.39 0.50 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 44 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 53 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 LS Contribution 381.59 15.07 5.75 5.75 Total: -1.00 -28.87 381.59 -9.96 -38.83 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -10.06 Total: 6.63 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.06 Total: -15.07 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.36 Total: -39.03 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.87 -9.96 -38.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094543967.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.061 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds