Wall clock time and date at job start Tue Mar 31 2020 12:31:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53003 * 109.47097 * 2 1
4 4 H 1.08996 * 109.46672 * 304.99630 * 3 2 1
5 5 C 1.50700 * 109.46957 * 184.99823 * 3 2 1
6 6 H 1.08002 * 120.00092 * 239.99402 * 5 3 2
7 7 C 1.37875 * 120.00320 * 60.00091 * 5 3 2
8 8 N 1.31516 * 120.00032 * 359.97438 * 7 5 3
9 9 Si 1.86794 * 120.00096 * 180.02562 * 7 5 3
10 10 H 1.48499 * 109.47534 * 59.99952 * 9 7 5
11 11 H 1.48506 * 109.47330 * 179.97438 * 9 7 5
12 12 H 1.48500 * 109.47372 * 299.99709 * 9 7 5
13 13 N 1.46496 * 109.46993 * 64.99825 * 3 2 1
14 14 C 1.34779 * 120.00107 * 274.99862 * 13 3 2
15 15 O 1.21284 * 119.99695 * 0.02562 * 14 13 3
16 16 C 1.50696 * 120.00208 * 180.02562 * 14 13 3
17 17 C 1.53002 * 109.47300 * 59.99783 * 16 14 13
18 18 C 1.52997 * 109.46965 * 179.97438 * 17 16 14
19 19 C 1.52997 * 109.47457 * 300.00135 * 18 17 16
20 20 C 1.53002 * 109.46817 * 60.00169 * 19 18 17
21 21 C 1.53001 * 109.46637 * 179.97438 * 20 19 18
22 22 C 1.52996 * 109.47346 * 299.99737 * 20 19 18
23 23 C 1.53000 * 109.47233 * 60.00194 * 20 19 18
24 24 C 1.52997 * 109.47060 * 299.99657 * 23 20 19
25 25 C 1.52992 * 109.47482 * 180.02562 * 24 23 20
26 26 C 1.52999 * 109.47317 * 59.99960 * 24 23 20
27 27 C 1.52997 * 109.46910 * 299.99840 * 16 14 13
28 28 H 1.08997 * 109.46850 * 60.00388 * 1 2 3
29 29 H 1.09006 * 109.46852 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47188 * 300.00111 * 1 2 3
31 31 H 1.09004 * 109.47460 * 239.99466 * 2 1 3
32 32 H 1.09006 * 109.47013 * 119.99773 * 2 1 3
33 33 H 0.96996 * 120.00094 * 179.97438 * 8 7 5
34 34 H 0.97006 * 120.00096 * 95.00399 * 13 3 2
35 35 H 1.09000 * 109.47312 * 300.00049 * 17 16 14
36 36 H 1.09004 * 109.46930 * 60.00105 * 17 16 14
37 37 H 1.09001 * 109.46989 * 179.97438 * 18 17 16
38 38 H 1.08993 * 109.47194 * 299.99651 * 19 18 17
39 39 H 1.09002 * 109.46695 * 179.97438 * 19 18 17
40 40 H 1.09002 * 109.47508 * 299.99876 * 21 20 19
41 41 H 1.09000 * 109.47437 * 60.00474 * 21 20 19
42 42 H 1.09001 * 109.47109 * 179.97438 * 21 20 19
43 43 H 1.08992 * 109.47554 * 180.02562 * 22 20 19
44 44 H 1.09004 * 109.47108 * 300.00289 * 22 20 19
45 45 H 1.09002 * 109.47398 * 59.99826 * 23 20 19
46 46 H 1.09001 * 109.47194 * 180.02562 * 23 20 19
47 47 H 1.09001 * 109.47066 * 60.00169 * 25 24 23
48 48 H 1.08996 * 109.47747 * 179.97438 * 25 24 23
49 49 H 1.09002 * 109.47103 * 300.00247 * 25 24 23
50 50 H 1.09000 * 109.47486 * 180.02562 * 26 24 23
51 51 H 1.09002 * 109.46716 * 60.00091 * 26 24 23
52 52 H 1.09001 * 109.47375 * 300.00278 * 27 16 14
53 53 H 1.09000 * 109.47140 * 60.00295 * 27 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5419 1.4443 -0.1238
6 1 4.1472 1.8889 0.6523
7 6 4.1433 0.8784 -1.2279
8 7 3.4063 0.3366 -2.1728
9 14 6.0050 0.8800 -1.3809
10 1 6.5966 0.1452 -0.2341
11 1 6.3980 0.2156 -2.6496
12 1 6.5005 2.2799 -1.3806
13 7 1.6524 2.0975 1.2518
14 6 0.4350 2.6644 1.3669
15 8 -0.3397 2.6319 0.4343
16 6 0.0365 3.3386 2.6543
17 6 1.0070 4.4833 2.9523
18 6 0.6019 5.1682 4.2591
19 6 -0.8170 5.7245 4.1249
20 6 -1.7874 4.5797 3.8270
21 6 -3.2065 5.1360 3.6935
22 6 -1.3825 3.8948 2.5202
23 6 -1.7440 3.5637 4.9701
24 6 -0.3250 3.0074 5.1043
25 6 -0.2816 1.9910 6.2469
26 6 0.6455 4.1521 5.4021
27 6 0.0804 2.3223 3.7971
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 1.8934 -0.5139 -0.8900
32 1 1.8933 -0.5138 0.8901
33 1 3.8294 -0.0612 -2.9497
34 1 2.2719 2.1232 1.9978
35 1 2.0180 4.0871 3.0475
36 1 0.9757 5.2074 2.1381
37 1 1.2936 5.9834 4.4716
38 1 -0.8480 6.4484 3.3107
39 1 -1.1056 6.2120 5.0561
40 1 -3.4948 5.6236 4.6247
41 1 -3.2379 5.8600 2.8793
42 1 -3.8978 4.3205 3.4808
43 1 -2.0741 3.0797 2.3077
44 1 -1.4135 4.6187 1.7058
45 1 -2.0325 4.0516 5.9011
46 1 -2.4350 2.7479 4.7576
47 1 -0.9729 1.1755 6.0342
48 1 0.7292 1.5943 6.3422
49 1 -0.5703 2.4785 7.1781
50 1 1.6565 3.7558 5.4973
51 1 0.3570 4.6400 6.3332
52 1 -0.6109 1.5067 3.5848
53 1 1.0914 1.9261 3.8923
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000094543967.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:31:53
Heat of formation + Delta-G solvation = -101.574229 kcal
Electronic energy + Delta-G solvation = -29919.845769 eV
Core-core repulsion = 26367.043076 eV
Total energy + Delta-G solvation = -3552.802693 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 319.225 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.93322 -40.25657 -36.96087 -35.61315 -34.88061 -34.15417 -33.69898 -32.44893
-28.98035 -27.71399 -27.39746 -26.94082 -26.83265 -25.27581 -23.95508 -21.99373
-21.63553 -20.72280 -20.58575 -18.70614 -18.22801 -17.23032 -17.08117 -16.24416
-16.11536 -15.42203 -15.39259 -15.28174 -15.08994 -15.03908 -14.88014 -14.69837
-14.55597 -13.95123 -13.70956 -13.39603 -13.33272 -13.18580 -12.98583 -12.93500
-12.90057 -12.72508 -12.68102 -12.65219 -12.54406 -12.20828 -12.07912 -11.81881
-11.79659 -11.63817 -11.61400 -11.51890 -11.46595 -11.28838 -11.06089 -10.58556
-10.55436 -10.51005 -10.15260 -9.59234 -8.16276 -6.34045 1.43494 1.45410
1.53180 1.90481 2.35980 2.66982 3.12722 3.51324 3.56734 3.58264
3.98389 4.05265 4.15762 4.22695 4.23500 4.29256 4.33071 4.42758
4.43920 4.45610 4.53946 4.59267 4.71151 4.74144 4.77190 4.78434
4.88226 4.90904 4.98941 5.03617 5.04678 5.05440 5.09336 5.14098
5.21164 5.22737 5.23108 5.25794 5.27169 5.31193 5.34110 5.40730
5.42181 5.54492 5.58268 5.62456 5.63173 5.67566 5.69163 5.78494
5.93869 6.16579 6.74104 7.03248 7.33521 7.63007 8.88851
Molecular weight = 319.23amu
Principal moments of inertia in cm(-1)
A = 0.018611 B = 0.003931 C = 0.003764
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1504.111397 B = 7121.154330 C = 7436.883784
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.119 4.119
3 C 0.279 3.721
4 H -0.007 1.007
5 C -0.548 4.548
6 H 0.070 0.930
7 C 0.016 3.984
8 N -0.915 5.915
9 Si 0.969 3.031
10 H -0.264 1.264
11 H -0.286 1.286
12 H -0.272 1.272
13 N -0.703 5.703
14 C 0.505 3.495
15 O -0.592 6.592
16 C -0.062 4.062
17 C -0.100 4.100
18 C -0.079 4.079
19 C -0.100 4.100
20 C -0.056 4.056
21 C -0.138 4.138
22 C -0.074 4.074
23 C -0.093 4.093
24 C -0.053 4.053
25 C -0.138 4.138
26 C -0.098 4.098
27 C -0.090 4.090
28 H 0.023 0.977
29 H 0.045 0.955
30 H 0.042 0.958
31 H 0.071 0.929
32 H 0.040 0.960
33 H 0.265 0.735
34 H 0.399 0.601
35 H 0.068 0.932
36 H 0.048 0.952
37 H 0.088 0.912
38 H 0.054 0.946
39 H 0.086 0.914
40 H 0.075 0.925
41 H 0.048 0.952
42 H 0.049 0.951
43 H 0.044 0.956
44 H 0.042 0.958
45 H 0.085 0.915
46 H 0.054 0.946
47 H 0.049 0.951
48 H 0.056 0.944
49 H 0.072 0.928
50 H 0.066 0.934
51 H 0.085 0.915
52 H 0.049 0.951
53 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.590 8.713 20.639 23.654
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.158 4.158
3 C 0.176 3.824
4 H 0.011 0.989
5 C -0.586 4.586
6 H 0.088 0.912
7 C -0.184 4.184
8 N -0.554 5.554
9 Si 0.794 3.206
10 H -0.188 1.188
11 H -0.212 1.212
12 H -0.197 1.197
13 N -0.351 5.351
14 C 0.292 3.708
15 O -0.474 6.474
16 C -0.065 4.065
17 C -0.138 4.138
18 C -0.098 4.098
19 C -0.137 4.137
20 C -0.056 4.056
21 C -0.195 4.195
22 C -0.112 4.112
23 C -0.130 4.130
24 C -0.053 4.053
25 C -0.195 4.195
26 C -0.135 4.135
27 C -0.128 4.128
28 H 0.042 0.958
29 H 0.064 0.936
30 H 0.061 0.939
31 H 0.090 0.910
32 H 0.058 0.942
33 H 0.074 0.926
34 H 0.233 0.767
35 H 0.086 0.914
36 H 0.067 0.933
37 H 0.106 0.894
38 H 0.073 0.927
39 H 0.104 0.896
40 H 0.094 0.906
41 H 0.068 0.932
42 H 0.068 0.932
43 H 0.063 0.937
44 H 0.061 0.939
45 H 0.103 0.897
46 H 0.073 0.927
47 H 0.068 0.932
48 H 0.075 0.925
49 H 0.091 0.909
50 H 0.085 0.915
51 H 0.103 0.897
52 H 0.068 0.932
53 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -8.105 8.577 19.786 23.038
hybrid contribution 1.092 -0.421 -1.111 1.613
sum -7.014 8.156 18.675 21.552
Atomic orbital electron populations
1.21657 0.97159 0.98966 1.00079 1.21767 0.93567 0.99291 1.01167
1.18317 0.93576 0.89045 0.81471 0.98907 1.21537 0.91413 1.38976
1.06701 0.91214 1.25767 1.03310 0.94328 0.94971 1.70048 1.37146
1.38324 1.09848 0.85440 0.79112 0.78449 0.77591 1.18846 1.21177
1.19674 1.46261 1.15622 1.55990 1.17195 1.21240 0.81485 0.78051
0.90030 1.90624 1.52625 1.61427 1.42714 1.20695 0.97741 0.96627
0.91484 1.21558 0.97708 0.95792 0.98705 1.21070 0.97363 0.97942
0.93397 1.21595 0.93586 0.96354 1.02187 1.20504 0.95810 0.95625
0.93632 1.21816 0.94782 1.00607 1.02298 1.21281 0.93420 0.98944
0.97548 1.21615 0.95555 0.97673 0.98146 1.20464 0.95768 0.95615
0.93415 1.21815 1.01957 0.98168 0.97549 1.21593 0.99074 0.94892
0.97960 1.21573 1.01661 0.96036 0.93489 0.95819 0.93638 0.93921
0.91044 0.94164 0.92630 0.76660 0.91382 0.93349 0.89391 0.92725
0.89580 0.90629 0.93236 0.93197 0.93715 0.93884 0.89675 0.92749
0.93161 0.92457 0.90878 0.91527 0.89682 0.93239 0.91474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.71 8.51 71.98 0.61 -5.10 16
2 C -0.12 -6.05 5.45 30.59 0.17 -5.88 16
3 C 0.28 14.74 2.24 44.25 0.10 14.84 16
4 H -0.01 -0.44 7.58 -2.39 -0.02 -0.46 16
5 C -0.55 -29.49 8.73 25.60 0.22 -29.27 16
6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16
7 C 0.02 0.89 5.29 84.65 0.45 1.34 16
8 N -0.92 -53.18 11.29 21.45 0.24 -52.94 16
9 Si 0.97 42.46 29.54 68.60 2.03 44.49 16
10 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16
11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16
12 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16
13 N -0.70 -30.06 4.81 -446.10 -2.14 -32.21 16
14 C 0.50 20.81 5.05 87.66 0.44 21.26 16
15 O -0.59 -29.62 13.12 -3.04 -0.04 -29.66 16
16 C -0.06 -1.86 0.61 -52.93 -0.03 -1.89 16
17 C -0.10 -2.57 4.37 30.59 0.13 -2.43 16
18 C -0.08 -1.44 3.19 -10.79 -0.03 -1.47 16
19 C -0.10 -1.74 4.47 30.59 0.14 -1.60 16
20 C -0.06 -1.11 0.77 -52.18 -0.04 -1.15 16
21 C -0.14 -2.44 8.47 71.98 0.61 -1.83 16
22 C -0.07 -2.15 3.04 30.59 0.09 -2.05 16
23 C -0.09 -1.61 3.75 30.59 0.11 -1.49 16
24 C -0.05 -0.94 0.77 -52.17 -0.04 -0.98 16
25 C -0.14 -2.07 8.47 71.98 0.61 -1.46 16
26 C -0.10 -1.51 4.47 30.60 0.14 -1.38 16
27 C -0.09 -2.26 3.65 30.61 0.11 -2.15 16
28 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16
29 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16
30 H 0.04 1.95 5.64 -2.39 -0.01 1.93 16
31 H 0.07 4.04 5.95 -2.38 -0.01 4.03 16
32 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16
33 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16
34 H 0.40 14.85 7.38 -92.70 -0.68 14.16 16
35 H 0.07 1.73 7.56 -2.39 -0.02 1.71 16
36 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16
37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16
42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
43 H 0.04 1.46 8.10 -2.39 -0.02 1.44 16
44 H 0.04 1.42 8.10 -2.38 -0.02 1.40 16
45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
46 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
47 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
48 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
49 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16
50 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
51 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16
52 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
53 H 0.07 1.68 7.56 -2.39 -0.02 1.66 16
Total: -1.00 -66.26 381.59 4.05 -62.21
By element:
Atomic # 1 Polarization: 30.64 SS G_CDS: 0.17 Total: 30.82 kcal
Atomic # 6 Polarization: -26.51 SS G_CDS: 3.79 Total: -22.72 kcal
Atomic # 7 Polarization: -83.25 SS G_CDS: -1.90 Total: -85.15 kcal
Atomic # 8 Polarization: -29.62 SS G_CDS: -0.04 Total: -29.66 kcal
Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal
Total: -66.26 4.05 -62.21 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000094543967.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.362 kcal
(2) G-P(sol) polarization free energy of solvation -66.264 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.626 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.574 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds