Wall clock time and date at job start Tue Mar 31 2020 12:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47226 * 2 1 4 4 C 1.46897 * 111.00338 * 75.17428 * 3 2 1 5 5 C 1.52999 * 109.46972 * 209.60797 * 4 3 2 6 6 C 1.52994 * 109.47115 * 299.07409 * 5 4 3 7 7 C 1.52995 * 109.47311 * 59.07973 * 5 4 3 8 8 C 1.53002 * 109.46820 * 179.07987 * 5 4 3 9 9 C 1.50697 * 109.46995 * 179.97438 * 8 5 4 10 10 H 1.07998 * 120.00479 * 359.97438 * 9 8 5 11 11 C 1.37880 * 120.00244 * 179.97438 * 9 8 5 12 12 N 1.31516 * 119.99753 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00245 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47297 * 60.00669 * 13 11 9 15 15 H 1.48510 * 109.47124 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47367 * 300.00240 * 13 11 9 17 17 C 1.46897 * 110.99566 * 199.12946 * 3 2 1 18 18 H 1.09006 * 109.47132 * 206.34540 * 17 3 2 19 19 C 1.53004 * 109.47671 * 326.34802 * 17 3 2 20 20 C 1.50704 * 109.47538 * 86.35110 * 17 3 2 21 21 C 1.38290 * 119.96884 * 333.10731 * 20 17 3 22 22 C 1.38238 * 120.11388 * 179.97438 * 21 20 17 23 23 C 1.38173 * 120.05397 * 359.97438 * 22 21 20 24 24 C 1.38708 * 119.94123 * 359.76260 * 23 22 21 25 25 O 1.35902 * 120.05506 * 180.25863 * 24 23 22 26 26 C 1.42901 * 116.99903 * 0.25283 * 25 24 23 27 27 C 1.38116 * 119.97505 * 153.08973 * 20 17 3 28 28 H 1.08999 * 109.47029 * 303.61007 * 1 2 3 29 29 H 1.08997 * 109.46912 * 63.60480 * 1 2 3 30 30 H 1.08997 * 109.47365 * 183.60263 * 1 2 3 31 31 H 1.09003 * 109.47278 * 239.99245 * 2 1 3 32 32 H 1.09010 * 109.46844 * 120.00102 * 2 1 3 33 33 H 1.08998 * 109.47137 * 329.60824 * 4 3 2 34 34 H 1.09006 * 109.47001 * 89.60359 * 4 3 2 35 35 H 1.09001 * 109.47178 * 69.33401 * 6 5 4 36 36 H 1.09001 * 109.47196 * 189.33798 * 6 5 4 37 37 H 1.09003 * 109.47611 * 309.33821 * 6 5 4 38 38 H 1.08998 * 109.47589 * 65.30235 * 7 5 4 39 39 H 1.09002 * 109.47378 * 185.30826 * 7 5 4 40 40 H 1.09005 * 109.46641 * 305.30646 * 7 5 4 41 41 H 1.09008 * 109.46945 * 299.99721 * 8 5 4 42 42 H 1.09000 * 109.47579 * 59.99882 * 8 5 4 43 43 H 0.97004 * 120.00278 * 179.97438 * 12 11 9 44 44 H 1.09007 * 109.46475 * 300.00465 * 19 17 3 45 45 H 1.08996 * 109.46996 * 59.99638 * 19 17 3 46 46 H 1.08997 * 109.47621 * 180.02562 * 19 17 3 47 47 H 1.08002 * 119.94024 * 359.96265 * 21 20 17 48 48 H 1.08003 * 119.97368 * 180.02562 * 22 21 20 49 49 H 1.08001 * 120.02548 * 180.02562 * 23 22 21 50 50 H 1.08995 * 109.47325 * 300.00297 * 26 25 24 51 51 H 1.08996 * 109.47004 * 60.00066 * 26 25 24 52 52 H 1.09003 * 109.47065 * 179.97438 * 26 25 24 53 53 H 1.08000 * 120.02944 * 0.02680 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8644 1.9983 1.3257 5 6 1.6596 3.5064 1.1690 6 6 2.8835 4.1189 0.4851 7 6 0.4157 3.7665 0.3170 8 6 1.4749 4.1420 2.5485 9 6 1.2739 5.6275 2.3942 10 1 1.2779 6.0738 1.4108 11 6 1.0849 6.4170 3.5087 12 7 1.0805 5.8737 4.7064 13 14 0.8364 8.2585 3.3176 14 1 -0.3701 8.5119 2.4897 15 1 0.6570 8.8754 4.6565 16 1 2.0252 8.8523 2.6547 17 6 3.4167 1.4492 -0.4494 18 1 3.8959 2.3299 -0.0216 19 6 4.1584 0.1918 0.0087 20 6 3.4572 1.5363 -1.9534 21 6 2.4231 1.0077 -2.7041 22 6 2.4569 1.0864 -4.0838 23 6 3.5244 1.6943 -4.7163 24 6 4.5603 2.2301 -3.9654 25 8 5.6088 2.8331 -4.5849 26 6 5.5765 2.8846 -6.0126 27 6 4.5269 2.1443 -2.5809 28 1 -0.3633 0.5688 0.8559 29 1 -0.3633 0.4568 -0.9205 30 1 -0.3634 -1.0256 0.0646 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 0.9996 1.5645 1.8277 34 1 2.7598 1.8128 1.9190 35 1 2.9206 3.7919 -0.5540 36 1 2.8141 5.2061 0.5217 37 1 3.7878 3.7950 1.0004 38 1 -0.4685 3.4138 0.8478 39 1 0.3228 4.8357 0.1265 40 1 0.5068 3.2351 -0.6304 41 1 0.6030 3.7056 3.0358 42 1 2.3611 3.9568 3.1555 43 1 0.9479 6.4292 5.4905 44 1 4.1291 0.1289 1.0966 45 1 3.6792 -0.6887 -0.4191 46 1 5.1951 0.2398 -0.3244 47 1 1.5877 0.5324 -2.2115 48 1 1.6478 0.6731 -4.6678 49 1 3.5501 1.7559 -5.7942 50 1 5.5438 1.8710 -6.4121 51 1 4.6911 3.4314 -6.3365 52 1 6.4698 3.3910 -6.3782 53 1 5.3344 2.5569 -1.9942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120166996.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:07 Heat of formation + Delta-G solvation = -27.488867 kcal Electronic energy + Delta-G solvation = -28591.127008 eV Core-core repulsion = 25041.536897 eV Total energy + Delta-G solvation = -3549.590111 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34021 -40.25234 -38.29456 -36.87991 -34.37349 -33.62058 -31.39899 -30.87167 -29.72603 -28.77129 -28.04715 -27.91517 -26.80327 -24.81333 -24.69389 -23.27902 -22.29191 -20.68461 -19.49013 -18.61605 -18.26252 -17.17201 -17.09033 -16.71006 -16.57570 -16.42436 -15.97012 -15.71147 -15.12556 -14.91216 -14.50465 -14.45610 -14.31814 -14.21829 -14.09064 -13.88264 -13.40175 -13.22979 -13.16508 -13.04302 -12.79655 -12.69091 -12.65192 -12.49716 -12.42672 -12.29366 -12.19015 -12.11651 -11.94521 -11.84887 -11.68860 -11.49354 -11.45657 -11.17622 -10.82598 -10.59078 -10.47937 -9.67844 -9.06814 -9.02138 -8.12370 -6.18644 0.46874 0.62643 1.40461 1.42573 1.49885 2.41015 2.44791 2.87168 3.08972 3.21299 3.82676 3.98398 4.05522 4.16497 4.24875 4.27695 4.28714 4.35552 4.41245 4.42245 4.49616 4.54062 4.57460 4.64816 4.67966 4.74886 4.75482 4.77941 4.78799 4.93493 5.01242 5.02365 5.05885 5.11387 5.16316 5.18852 5.22120 5.28351 5.30810 5.43726 5.47450 5.55508 5.57802 5.62905 5.65056 5.70465 5.80588 5.91606 5.95035 5.96822 6.25253 6.35711 6.43040 6.55434 6.96101 7.48161 8.99650 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.003660 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.012297 B = 7648.446521 C = 8930.116627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 N -0.520 5.520 4 C 0.078 3.922 5 C -0.046 4.046 6 C -0.119 4.119 7 C -0.101 4.101 8 C 0.042 3.958 9 C -0.513 4.513 10 H 0.061 0.939 11 C -0.002 4.002 12 N -0.937 5.937 13 Si 0.952 3.048 14 H -0.269 1.269 15 H -0.286 1.286 16 H -0.270 1.270 17 C 0.101 3.899 18 H 0.090 0.910 19 C -0.169 4.169 20 C -0.024 4.024 21 C -0.148 4.148 22 C -0.085 4.085 23 C -0.217 4.217 24 C 0.112 3.888 25 O -0.341 6.341 26 C 0.020 3.980 27 C -0.170 4.170 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.067 0.933 41 H -0.015 1.015 42 H -0.018 1.018 43 H 0.259 0.741 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.141 0.859 48 H 0.146 0.854 49 H 0.145 0.855 50 H 0.066 0.934 51 H 0.061 0.939 52 H 0.115 0.885 53 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.300 -14.295 -20.771 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 N -0.244 5.244 4 C -0.050 4.050 5 C -0.046 4.046 6 C -0.176 4.176 7 C -0.158 4.158 8 C 0.005 3.995 9 C -0.551 4.551 10 H 0.080 0.920 11 C -0.199 4.199 12 N -0.579 5.579 13 Si 0.778 3.222 14 H -0.194 1.194 15 H -0.212 1.212 16 H -0.195 1.195 17 C -0.008 4.008 18 H 0.108 0.892 19 C -0.228 4.228 20 C -0.025 4.025 21 C -0.166 4.166 22 C -0.103 4.103 23 C -0.235 4.235 24 C 0.067 3.933 25 O -0.256 6.256 26 C -0.074 4.074 27 C -0.189 4.189 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.004 0.996 42 H 0.001 0.999 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.158 0.842 48 H 0.163 0.837 49 H 0.163 0.837 50 H 0.085 0.915 51 H 0.080 0.920 52 H 0.133 0.867 53 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.161 -13.904 -20.848 25.586 hybrid contribution 0.314 0.815 1.116 1.417 sum 5.475 -13.090 -19.732 24.304 Atomic orbital electron populations 1.21796 0.94702 1.01731 1.02029 1.22369 0.96203 0.88616 1.01228 1.62031 1.18349 1.18068 1.25910 1.22043 0.99483 0.94520 0.88978 1.20392 0.95755 0.93062 0.95403 1.21824 0.96317 1.00082 0.99357 1.21440 0.95777 0.99551 0.99053 1.18991 0.93844 0.94597 0.92097 1.21576 1.47052 0.93877 0.92589 0.92048 1.25870 0.95758 1.03080 0.95180 1.70095 1.52193 1.37116 0.98446 0.85691 0.79005 0.80420 0.77101 1.19387 1.21186 1.19514 1.20969 0.88987 0.99467 0.91339 0.89202 1.22389 1.01201 0.98054 1.01119 1.19532 0.93121 0.95182 0.94659 1.21317 0.99282 1.02304 0.93719 1.21254 0.97474 0.96933 0.94598 1.21431 0.95966 1.05302 1.00827 1.19086 0.87915 0.94096 0.92204 1.86037 1.41849 1.74275 1.23405 1.23292 1.04521 1.02877 0.76699 1.20290 1.00859 1.05794 0.91961 0.94149 0.92043 0.90916 0.89018 0.94694 0.91798 0.95545 0.91888 0.94343 0.94430 0.95156 0.95106 0.91373 0.99635 0.99941 0.93186 0.92731 0.90778 0.91629 0.84187 0.83656 0.83726 0.91526 0.92046 0.86696 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.98 71.98 0.72 -2.32 16 2 C 0.04 0.93 3.06 86.30 0.26 1.19 16 3 N -0.52 -13.98 2.66 -875.36 -2.33 -16.31 16 4 C 0.08 2.64 3.91 86.30 0.34 2.97 16 5 C -0.05 -1.85 0.60 -52.18 -0.03 -1.88 16 6 C -0.12 -4.65 6.75 71.98 0.49 -4.16 16 7 C -0.10 -3.95 8.02 71.98 0.58 -3.38 16 8 C 0.04 2.22 4.04 29.85 0.12 2.34 16 9 C -0.51 -29.01 7.58 25.60 0.19 -28.81 16 10 H 0.06 3.38 5.74 -2.91 -0.02 3.36 16 11 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 12 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 13 Si 0.95 45.35 29.54 68.60 2.03 47.37 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 17 C 0.10 2.60 1.33 44.17 0.06 2.65 16 18 H 0.09 2.67 4.37 -2.38 -0.01 2.66 16 19 C -0.17 -3.68 8.13 71.98 0.59 -3.10 16 20 C -0.02 -0.60 4.67 -19.88 -0.09 -0.70 16 21 C -0.15 -3.31 8.69 22.28 0.19 -3.11 16 22 C -0.08 -1.64 10.04 22.25 0.22 -1.42 16 23 C -0.22 -4.31 9.04 22.37 0.20 -4.11 16 24 C 0.11 2.70 6.69 22.51 0.15 2.86 16 25 O -0.34 -7.83 10.50 -92.45 -0.97 -8.80 16 26 C 0.02 0.27 9.81 113.37 1.11 1.38 16 27 C -0.17 -4.44 9.65 22.36 0.22 -4.22 16 28 H 0.04 1.01 6.74 -2.39 -0.02 1.00 16 29 H 0.06 1.27 7.97 -2.39 -0.02 1.25 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.70 4.85 -2.39 -0.01 1.69 16 32 H 0.03 0.76 7.51 -2.38 -0.02 0.75 16 33 H 0.06 2.21 6.40 -2.39 -0.02 2.20 16 34 H 0.03 0.93 7.53 -2.38 -0.02 0.91 16 35 H 0.06 2.22 6.22 -2.39 -0.01 2.21 16 36 H 0.04 1.66 6.36 -2.39 -0.02 1.65 16 37 H 0.04 1.42 7.13 -2.39 -0.02 1.40 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.03 1.29 6.81 -2.39 -0.02 1.27 16 40 H 0.07 2.37 7.41 -2.38 -0.02 2.35 16 41 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 42 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 43 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.05 1.24 7.82 -2.38 -0.02 1.22 16 45 H 0.07 1.41 6.18 -2.39 -0.01 1.40 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.14 2.91 4.81 -2.91 -0.01 2.90 16 48 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 49 H 0.15 2.09 6.30 -2.91 -0.02 2.07 16 50 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 51 H 0.06 0.72 7.67 -2.39 -0.02 0.70 16 52 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.12 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -66.55 393.52 5.67 -60.88 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.88 Total: 17.99 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 5.78 Total: -43.48 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -2.04 Total: -73.95 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.97 Total: -8.80 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -66.55 5.67 -60.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120166996.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.390 kcal (2) G-P(sol) polarization free energy of solvation -66.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds