Wall clock time and date at job start Tue Mar 31 2020 12:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38131 * 119.94707 * 179.69741 * 6 5 4 8 8 C 1.38290 * 120.04957 * 0.59675 * 7 6 5 9 9 C 1.38250 * 120.11062 * 359.67603 * 8 7 6 10 10 C 1.50704 * 119.96871 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47036 * 270.02264 * 10 9 8 12 12 N 1.46896 * 109.46893 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00103 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47357 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47449 * 300.00856 * 14 13 12 16 16 C 1.53008 * 109.46859 * 60.00355 * 14 13 12 17 17 C 1.52996 * 109.47572 * 180.02562 * 14 13 12 18 18 C 1.50692 * 109.47641 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00056 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00240 * 180.02562 * 18 17 14 21 21 N 1.31520 * 120.00198 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46729 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47169 * 119.99529 * 22 20 18 25 25 H 1.48501 * 109.47075 * 239.99863 * 22 20 18 26 26 C 1.38162 * 120.05723 * 0.02573 * 9 8 7 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 35 35 H 1.07993 * 119.97567 * 180.29505 * 7 6 5 36 36 H 1.07997 * 119.94208 * 179.70200 * 8 7 6 37 37 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 38 38 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 39 39 H 1.08996 * 109.47184 * 299.99748 * 11 10 9 40 40 H 1.09005 * 109.47118 * 60.00026 * 11 10 9 41 41 H 1.00907 * 111.00256 * 56.04803 * 12 11 10 42 42 H 1.08993 * 109.47205 * 300.00771 * 13 12 11 43 43 H 1.09006 * 109.46291 * 60.00623 * 13 12 11 44 44 H 1.08997 * 109.47065 * 59.99425 * 15 14 13 45 45 H 1.08997 * 109.47154 * 180.02562 * 15 14 13 46 46 H 1.09005 * 109.46900 * 299.99532 * 15 14 13 47 47 H 1.08999 * 109.46713 * 60.00085 * 16 14 13 48 48 H 1.08997 * 109.46784 * 179.97438 * 16 14 13 49 49 H 1.08994 * 109.47182 * 299.99780 * 16 14 13 50 50 H 1.08999 * 109.47098 * 300.00588 * 17 14 13 51 51 H 1.09003 * 109.46918 * 59.99770 * 17 14 13 52 52 H 0.96996 * 120.00238 * 180.02562 * 21 20 18 53 53 H 1.07998 * 120.02891 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0472 -0.0013 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0029 11 6 8.1096 4.0680 -1.4455 12 7 9.5764 4.1476 -1.4460 13 6 10.1017 4.1755 -2.8177 14 6 11.6288 4.2591 -2.7774 15 6 12.0508 5.5336 -2.0435 16 6 12.1871 3.0388 -2.0423 17 6 12.1759 4.2888 -4.2059 18 6 13.6801 4.3705 -4.1663 19 1 14.1945 4.3988 -3.2171 20 6 14.3996 4.4101 -5.3417 21 7 13.7732 4.3761 -6.4977 22 14 16.2643 4.5106 -5.2926 23 1 16.7216 4.5349 -3.8800 24 1 16.8420 3.3280 -5.9801 25 1 16.7115 5.7495 -5.9786 26 6 5.4712 2.7271 -0.0018 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.2529 3.7627 -0.0114 35 1 3.3742 5.9537 -0.0009 36 1 5.8324 6.0804 -0.0027 37 1 7.9160 4.9486 0.5110 38 1 8.0117 3.1711 0.5107 39 1 7.7945 3.1599 -1.9593 40 1 7.6987 4.9373 -1.9591 41 1 9.9801 3.3870 -0.9200 42 1 9.8007 3.2678 -3.3405 43 1 9.7043 5.0452 -3.3411 44 1 11.6611 5.5128 -1.0258 45 1 13.1388 5.5933 -2.0153 46 1 11.6531 6.4030 -2.5672 47 1 11.8865 2.1309 -2.5651 48 1 13.2751 3.0981 -2.0140 49 1 11.7975 3.0181 -1.0246 50 1 11.8753 3.3811 -4.7290 51 1 11.7781 5.1583 -4.7293 52 1 14.2794 4.4036 -7.3246 53 1 6.0606 1.8222 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135955250.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:08 Heat of formation + Delta-G solvation = -65.640675 kcal Electronic energy + Delta-G solvation = -25852.343186 eV Core-core repulsion = 22301.098688 eV Total energy + Delta-G solvation = -3551.244497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.16653 -39.37200 -38.76221 -36.29010 -34.86800 -34.44657 -33.02358 -31.12037 -29.51593 -28.63364 -27.87181 -27.45727 -26.47305 -24.65261 -23.59086 -23.26402 -22.58879 -21.52063 -19.52181 -18.66879 -18.32508 -17.26328 -17.20999 -17.03004 -16.69516 -16.55266 -15.89812 -15.48616 -15.26722 -15.09495 -14.87825 -14.67541 -14.35635 -14.25300 -13.89519 -13.86389 -13.70165 -13.38818 -13.27360 -13.04008 -12.90659 -12.68683 -12.66656 -12.54393 -12.42995 -12.24461 -12.15337 -12.12658 -12.07714 -11.92597 -11.84555 -11.61858 -11.52761 -11.35629 -10.85136 -10.72820 -10.50661 -9.77293 -9.31192 -9.14507 -8.13465 -6.20607 0.34210 0.49292 1.40922 1.41776 1.54251 2.19993 2.44395 2.76575 3.20457 3.28109 3.81551 3.92003 3.92517 4.02549 4.06042 4.14145 4.22084 4.24147 4.28974 4.33361 4.40848 4.41951 4.45434 4.52702 4.56879 4.64366 4.74231 4.77796 4.79916 4.82845 4.96637 4.99681 5.09318 5.10152 5.10320 5.15356 5.20048 5.23994 5.25118 5.31500 5.36128 5.49767 5.53093 5.55310 5.60294 5.67062 5.70670 5.84905 5.88719 5.93704 6.08014 6.37593 6.46737 6.55374 6.94923 7.46849 8.99126 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.001755 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.116694 B =15947.303689 C =16498.818740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.053 3.947 4 O -0.336 6.336 5 C 0.115 3.885 6 C -0.218 4.218 7 C -0.080 4.080 8 C -0.161 4.161 9 C -0.045 4.045 10 C -0.069 4.069 11 C 0.069 3.931 12 N -0.680 5.680 13 C 0.082 3.918 14 C -0.057 4.057 15 C -0.106 4.106 16 C -0.122 4.122 17 C 0.039 3.961 18 C -0.513 4.513 19 H 0.067 0.933 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.958 3.042 23 H -0.260 1.260 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.168 4.168 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.021 0.979 40 H 0.066 0.934 41 H 0.345 0.655 42 H 0.014 0.986 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.029 0.971 47 H 0.035 0.965 48 H 0.047 0.953 49 H 0.070 0.930 50 H -0.018 1.018 51 H -0.017 1.017 52 H 0.259 0.741 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.767 -3.803 17.849 32.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.022 4.022 4 O -0.251 6.251 5 C 0.070 3.930 6 C -0.237 4.237 7 C -0.098 4.098 8 C -0.179 4.179 9 C -0.045 4.045 10 C -0.106 4.106 11 C -0.061 4.061 12 N -0.312 5.312 13 C -0.047 4.047 14 C -0.057 4.057 15 C -0.163 4.163 16 C -0.180 4.180 17 C 0.001 3.999 18 C -0.551 4.551 19 H 0.085 0.915 20 C -0.203 4.203 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.183 1.183 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.187 4.187 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.165 0.835 42 H 0.032 0.968 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.088 0.912 50 H 0.001 0.999 51 H 0.002 0.998 52 H 0.068 0.932 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.656 -3.322 17.754 32.199 hybrid contribution 0.706 -0.834 -1.184 1.611 sum -25.950 -4.156 16.570 31.068 Atomic orbital electron populations 1.21678 0.92717 1.03209 1.02746 1.21507 0.97251 0.94017 1.03299 1.23096 0.77053 0.99822 1.02193 1.86032 1.22973 1.27345 1.88753 1.19152 0.92408 0.84700 0.96763 1.21475 1.00896 0.92144 1.09158 1.21264 0.94613 0.97780 0.96146 1.21261 0.94239 0.98497 1.03905 1.19735 0.95882 0.92252 0.96665 1.20500 0.89582 1.04319 0.96225 1.21870 0.87676 0.99986 0.96540 1.60516 1.05575 1.51587 1.13541 1.21804 0.94725 0.98816 0.89354 1.20514 0.92753 0.96498 0.95947 1.21499 0.99825 0.95456 0.99556 1.21688 1.01003 0.96148 0.99123 1.19017 0.95128 0.93896 0.91823 1.21662 0.92851 1.48188 0.92416 0.91463 1.25948 1.03364 0.95553 0.95398 1.70124 1.37163 1.52840 0.97907 0.85495 0.80150 0.77399 0.78603 1.18346 1.20870 1.20867 1.20448 0.91773 0.98552 1.07882 0.91675 0.91936 0.91061 0.91491 0.91151 0.90983 0.91379 0.83816 0.83328 0.84506 0.89115 0.90247 0.96080 0.91559 0.83521 0.96755 0.92643 0.91148 0.94257 0.95150 0.94619 0.93383 0.91165 0.99932 0.99817 0.93206 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 71.98 0.71 -0.27 16 2 C -0.12 -1.33 6.30 30.59 0.19 -1.14 16 3 C 0.05 0.70 4.74 71.98 0.34 1.04 16 4 O -0.34 -6.94 10.14 -92.43 -0.94 -7.88 16 5 C 0.11 2.42 6.69 22.50 0.15 2.57 16 6 C -0.22 -3.74 9.04 22.37 0.20 -3.54 16 7 C -0.08 -1.29 10.04 22.26 0.22 -1.07 16 8 C -0.16 -2.93 9.70 22.29 0.22 -2.71 16 9 C -0.04 -0.91 5.13 -19.88 -0.10 -1.01 16 10 C -0.07 -1.33 5.60 29.85 0.17 -1.17 16 11 C 0.07 1.64 5.67 86.30 0.49 2.13 16 12 N -0.68 -18.65 5.71 -513.90 -2.94 -21.59 16 13 C 0.08 2.89 4.65 86.30 0.40 3.29 16 14 C -0.06 -2.28 0.60 -52.18 -0.03 -2.32 16 15 C -0.11 -4.04 8.06 71.98 0.58 -3.46 16 16 C -0.12 -4.44 7.89 71.98 0.57 -3.87 16 17 C 0.04 2.05 4.04 29.84 0.12 2.18 16 18 C -0.51 -28.72 7.65 25.60 0.20 -28.52 16 19 H 0.07 3.60 5.68 -2.91 -0.02 3.58 16 20 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 21 N -0.94 -58.09 13.29 21.45 0.28 -57.81 16 22 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 26 C -0.17 -3.68 9.64 22.36 0.22 -3.47 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.77 7.68 -2.39 -0.02 0.75 16 33 H 0.07 0.79 7.65 -2.39 -0.02 0.77 16 34 H 0.14 1.77 6.30 -2.91 -0.02 1.75 16 35 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 38 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 39 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.35 8.67 6.77 -89.69 -0.61 8.07 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 45 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16 46 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 49 H 0.07 2.03 6.57 -2.39 -0.02 2.02 16 50 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 51 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 52 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 53 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -66.68 416.79 3.79 -62.89 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.24 Total: 18.73 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 5.11 Total: -41.22 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -2.65 Total: -79.40 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.94 Total: -7.88 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -66.68 3.79 -62.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135955250.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.755 kcal (2) G-P(sol) polarization free energy of solvation -66.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds