Wall clock time and date at job start Tue Mar 31 2020 12:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35896 * 117.00240 * 2 1 4 4 C 1.38732 * 120.05715 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94412 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05309 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94090 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47411 * 90.00125 * 7 6 5 9 9 H 1.09003 * 109.47377 * 54.99960 * 8 7 6 10 10 C 1.52998 * 109.47065 * 294.99882 * 8 7 6 11 11 C 1.53004 * 109.47522 * 174.99956 * 8 7 6 12 12 N 1.46895 * 109.47035 * 184.99817 * 11 8 7 13 13 C 1.46906 * 110.99789 * 179.97438 * 12 11 8 14 14 C 1.53002 * 109.47053 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47454 * 300.00316 * 14 13 12 16 16 C 1.52997 * 109.46978 * 60.00394 * 14 13 12 17 17 C 1.52996 * 109.46891 * 179.97438 * 14 13 12 18 18 C 1.50703 * 109.46946 * 180.02562 * 17 14 13 19 19 H 1.07998 * 120.00275 * 0.02562 * 18 17 14 20 20 C 1.37885 * 119.99908 * 180.02562 * 18 17 14 21 21 N 1.31511 * 119.99697 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99899 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47454 * 59.99701 * 22 20 18 24 24 H 1.48496 * 109.47112 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46926 * 299.99492 * 22 20 18 26 26 C 1.38267 * 120.11822 * 0.27328 * 6 5 4 27 27 C 1.38150 * 120.05172 * 359.44787 * 26 6 5 28 28 H 1.08998 * 109.46875 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46508 * 299.99601 * 1 2 3 30 30 H 1.08994 * 109.47075 * 59.99652 * 1 2 3 31 31 H 1.07994 * 120.02513 * 359.96398 * 4 3 2 32 32 H 1.08001 * 119.97039 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47540 * 329.99354 * 7 6 5 34 34 H 1.09002 * 109.47251 * 209.99827 * 7 6 5 35 35 H 1.09003 * 109.47086 * 300.00255 * 10 8 7 36 36 H 1.09007 * 109.47411 * 59.99689 * 10 8 7 37 37 H 1.08997 * 109.47659 * 179.97438 * 10 8 7 38 38 H 1.08996 * 109.46863 * 64.99659 * 11 8 7 39 39 H 1.09002 * 109.46661 * 304.99836 * 11 8 7 40 40 H 1.00902 * 111.00273 * 303.95364 * 12 11 8 41 41 H 1.08992 * 109.47459 * 299.99826 * 13 12 11 42 42 H 1.09004 * 109.47040 * 59.99976 * 13 12 11 43 43 H 1.09002 * 109.47067 * 59.99861 * 15 14 13 44 44 H 1.09000 * 109.47312 * 179.97438 * 15 14 13 45 45 H 1.09004 * 109.46930 * 299.99944 * 15 14 13 46 46 H 1.08998 * 109.47624 * 59.99457 * 16 14 13 47 47 H 1.09000 * 109.47140 * 179.97438 * 16 14 13 48 48 H 1.09002 * 109.47045 * 299.99833 * 16 14 13 49 49 H 1.09001 * 109.47372 * 300.00036 * 17 14 13 50 50 H 1.08996 * 109.47261 * 60.00575 * 17 14 13 51 51 H 0.97007 * 119.99539 * 180.02562 * 21 20 18 52 52 H 1.08003 * 119.97687 * 179.71085 * 26 6 5 53 53 H 1.07998 * 120.03203 * 180.27443 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3021 3.6757 -0.0005 7 6 3.9862 5.0184 -0.0005 8 6 4.2184 5.4726 -1.4430 9 1 3.2712 5.4675 -1.9824 10 6 5.1997 4.5183 -2.1264 11 6 4.7987 6.8883 -1.4449 12 7 4.9097 7.3701 -2.8281 13 6 5.4640 8.7299 -2.8690 14 6 5.5650 9.1960 -4.3228 15 6 6.4809 8.2483 -5.0999 16 6 4.1726 9.1936 -4.9570 17 6 6.1416 10.6125 -4.3654 18 6 6.2405 11.0718 -5.7973 19 1 5.9233 10.4189 -6.5970 20 6 6.7359 12.3257 -6.0864 21 7 7.1216 13.1209 -5.1126 22 14 6.8578 12.8953 -7.8613 23 1 5.5059 12.8931 -8.4758 24 1 7.4176 14.2700 -7.9026 25 1 7.7463 11.9756 -8.6164 26 6 1.9212 3.6048 0.0052 27 6 1.2916 2.3751 -0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 4.0209 0.3799 0.0015 32 1 5.1347 2.5749 0.0008 33 1 4.9439 4.9383 0.5138 34 1 3.3580 5.7463 0.5129 35 1 6.1469 4.5234 -1.5870 36 1 4.7864 3.5096 -2.1251 37 1 5.3648 4.8415 -3.1542 38 1 5.7862 6.8768 -0.9837 39 1 4.1420 7.5508 -0.8810 40 1 5.4613 6.7374 -3.3882 41 1 4.8117 9.4050 -2.3152 42 1 6.4562 8.7316 -2.4176 43 1 6.0696 7.2393 -5.0695 44 1 6.5525 8.5801 -6.1357 45 1 7.4729 8.2501 -4.6481 46 1 3.5200 9.8687 -4.4035 47 1 4.2444 9.5260 -5.9926 48 1 3.7613 8.1846 -4.9266 49 1 5.4887 11.2874 -3.8119 50 1 7.1335 10.6147 -3.9135 51 1 7.4698 14.0032 -5.3160 52 1 1.3343 4.5114 0.0095 53 1 0.2130 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157923300.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:55 Heat of formation + Delta-G solvation = -46.273397 kcal Electronic energy + Delta-G solvation = -26372.106677 eV Core-core repulsion = 22821.702008 eV Total energy + Delta-G solvation = -3550.404669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.48047 -38.57735 -37.67034 -36.00749 -33.31222 -32.02731 -31.41669 -30.21649 -28.05471 -27.11743 -26.55880 -26.29752 -25.79035 -24.08167 -22.92026 -22.17980 -21.30288 -20.01279 -18.45364 -17.82451 -16.61268 -16.24875 -16.08562 -15.99424 -15.46881 -14.85918 -14.77105 -14.52643 -14.27164 -14.00060 -13.88132 -13.63090 -13.31592 -12.99071 -12.82917 -12.72138 -12.41793 -12.31217 -12.02213 -11.96501 -11.85928 -11.71202 -11.43704 -11.10884 -10.96886 -10.90963 -10.87591 -10.77590 -10.67648 -10.65763 -10.45015 -10.20590 -10.08262 -9.64615 -9.25191 -8.98328 -8.80607 -8.31951 -8.29185 -8.01644 -5.93888 -3.93897 1.07358 1.15570 2.93956 3.36236 3.40743 3.43060 3.47281 4.39697 4.46894 4.51707 4.57877 4.69129 4.73566 4.75257 4.86605 5.04150 5.06251 5.10559 5.13224 5.19502 5.33764 5.41740 5.50592 5.56407 5.67442 5.72387 5.75484 5.78976 5.83320 5.87636 5.96387 6.01806 6.03347 6.09603 6.23065 6.26238 6.31919 6.38237 6.46613 6.50128 6.55089 6.70042 6.82792 6.86129 7.07516 7.24158 7.27744 7.29812 7.46611 7.71859 7.76311 7.89141 8.06518 8.51180 9.11256 9.68604 11.17697 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.032530 B = 0.001807 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.530374 B =15489.731218 C =15677.416891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.151 4.151 5 C -0.076 4.076 6 C -0.108 4.108 7 C -0.073 4.073 8 C -0.083 4.083 9 H 0.080 0.920 10 C -0.152 4.152 11 C 0.062 3.938 12 N -0.687 5.687 13 C 0.070 3.930 14 C -0.059 4.059 15 C -0.129 4.129 16 C -0.116 4.116 17 C 0.034 3.966 18 C -0.507 4.507 19 H 0.058 0.942 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.278 1.278 26 C -0.077 4.077 27 C -0.206 4.206 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.338 0.662 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.032 0.968 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.053 0.947 48 H 0.042 0.958 49 H 0.015 0.985 50 H 0.012 0.988 51 H 0.259 0.741 52 H 0.125 0.875 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 -24.702 12.983 29.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.073 3.927 4 C -0.170 4.170 5 C -0.094 4.094 6 C -0.109 4.109 7 C -0.111 4.111 8 C -0.102 4.102 9 H 0.098 0.902 10 C -0.209 4.209 11 C -0.068 4.068 12 N -0.320 5.320 13 C -0.059 4.059 14 C -0.059 4.059 15 C -0.186 4.186 16 C -0.173 4.173 17 C -0.003 4.003 18 C -0.546 4.546 19 H 0.076 0.924 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.716 3.284 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.204 1.204 26 C -0.095 4.095 27 C -0.224 4.224 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.158 0.842 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.033 0.967 50 H 0.030 0.970 51 H 0.069 0.931 52 H 0.143 0.857 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.078 -24.500 12.987 29.860 hybrid contribution 0.782 0.450 -0.708 1.147 sum -10.296 -24.050 12.278 28.899 Atomic orbital electron populations 1.23044 0.78439 1.03865 1.01393 1.86057 1.21355 1.27129 1.88894 1.19035 0.92404 0.84088 0.97216 1.20417 0.91347 0.98665 1.06542 1.20893 0.99842 0.90954 0.97720 1.19803 0.93448 0.95351 1.02269 1.20600 1.00299 0.92998 0.97175 1.21119 1.00087 0.94154 0.94829 0.90199 1.21933 0.98780 0.99523 1.00702 1.21980 0.98819 0.94911 0.91041 1.60590 1.57229 1.04289 1.09900 1.22096 0.96508 0.88721 0.98539 1.20631 0.95798 0.98081 0.91429 1.21768 0.98201 0.96868 1.01761 1.21594 0.95582 0.99496 1.00616 1.19116 0.95462 0.88720 0.97046 1.21211 1.41127 0.99623 0.92589 0.92356 1.25021 0.95843 0.96979 0.96785 1.69960 1.43628 1.08891 1.31275 0.86720 0.78303 0.77683 0.85649 1.20331 1.21465 1.20378 1.20874 0.94090 0.97033 0.97464 1.21221 0.99938 0.92392 1.08888 0.88313 0.92697 0.92607 0.85395 0.85375 0.91098 0.90937 0.93060 0.92345 0.92335 0.95744 0.91341 0.84222 0.91675 0.96013 0.94868 0.91743 0.94139 0.94217 0.92755 0.93897 0.96708 0.96953 0.93145 0.85706 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.94 10.50 -19.41 -0.20 -3.14 16 3 C 0.12 1.13 6.69 -39.21 -0.26 0.87 16 4 C -0.15 -1.39 9.99 -39.43 -0.39 -1.78 16 5 C -0.08 -0.66 7.95 -39.61 -0.31 -0.98 16 6 C -0.11 -0.98 4.71 -104.60 -0.49 -1.47 16 7 C -0.07 -0.63 4.84 -27.89 -0.13 -0.76 16 8 C -0.08 -0.83 2.58 -90.62 -0.23 -1.07 16 9 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 10 C -0.15 -1.47 8.53 37.16 0.32 -1.16 16 11 C 0.06 0.74 5.14 -3.82 -0.02 0.72 16 12 N -0.69 -9.98 5.71 -113.78 -0.65 -10.63 16 13 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 14 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 15 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 16 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 17 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 18 C -0.51 -13.98 7.65 -34.44 -0.26 -14.25 16 19 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 22 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 C -0.08 -0.68 9.69 -39.60 -0.38 -1.06 16 27 C -0.21 -1.80 9.04 -39.43 -0.36 -2.15 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.13 0.93 8.04 -52.49 -0.42 0.51 16 33 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.55 6.27 -51.92 -0.33 0.22 16 37 H 0.06 0.61 6.68 -51.93 -0.35 0.27 16 38 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.34 4.75 5.02 -39.29 -0.20 4.55 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 44 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.05 1.14 6.61 -51.93 -0.34 0.79 16 48 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 49 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 52 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 53 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 LS Contribution 408.56 15.07 6.16 6.16 Total: -1.00 -30.53 408.56 -9.87 -40.39 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -9.61 Total: 0.69 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -1.28 Total: -23.93 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.09 Total: -36.88 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: -0.20 Total: -3.14 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.53 -9.87 -40.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157923300.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.881 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds