Wall clock time and date at job start Tue Mar 31 2020 12:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38723 * 120.05884 * 359.72201 * 3 2 1 5 5 C 1.38145 * 119.94323 * 179.77076 * 4 3 2 6 6 C 1.38260 * 120.05692 * 0.50972 * 5 4 3 7 7 C 1.50706 * 119.94706 * 179.76915 * 6 5 4 8 8 C 1.52995 * 109.46738 * 269.97472 * 7 6 5 9 9 H 1.08993 * 109.47346 * 304.99835 * 8 7 6 10 10 C 1.53006 * 109.47331 * 65.00152 * 8 7 6 11 11 C 1.53002 * 109.46849 * 184.99797 * 8 7 6 12 12 N 1.46901 * 109.47304 * 175.00195 * 11 8 7 13 13 C 1.46899 * 111.00333 * 180.02562 * 12 11 8 14 14 C 1.53001 * 109.47351 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47012 * 300.00268 * 14 13 12 16 16 C 1.53002 * 109.46870 * 59.99805 * 14 13 12 17 17 C 1.52996 * 109.47316 * 180.02562 * 14 13 12 18 18 C 1.50694 * 109.47292 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00127 * 359.97438 * 18 17 14 20 20 C 1.37877 * 120.00413 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99553 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00341 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47051 * 60.00260 * 22 20 18 24 24 H 1.48503 * 109.46975 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47176 * 300.00250 * 22 20 18 26 26 C 1.38268 * 120.10972 * 359.74026 * 6 5 4 27 27 C 1.38139 * 120.05510 * 0.02562 * 26 6 5 28 28 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 30 30 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 31 31 H 1.08001 * 120.02769 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.97076 * 180.25587 * 5 4 3 33 33 H 1.09001 * 109.46891 * 29.97509 * 7 6 5 34 34 H 1.08994 * 109.47121 * 149.97471 * 7 6 5 35 35 H 1.08999 * 109.47127 * 179.97438 * 10 8 7 36 36 H 1.08998 * 109.46742 * 299.99863 * 10 8 7 37 37 H 1.08998 * 109.46824 * 59.99252 * 10 8 7 38 38 H 1.09002 * 109.47400 * 294.99694 * 11 8 7 39 39 H 1.09003 * 109.47486 * 55.00354 * 11 8 7 40 40 H 1.00909 * 110.99932 * 56.04222 * 12 11 8 41 41 H 1.09002 * 109.47024 * 299.99581 * 13 12 11 42 42 H 1.09001 * 109.47197 * 59.99978 * 13 12 11 43 43 H 1.08996 * 109.47353 * 59.99821 * 15 14 13 44 44 H 1.08994 * 109.47106 * 180.02562 * 15 14 13 45 45 H 1.09001 * 109.46946 * 299.99608 * 15 14 13 46 46 H 1.08994 * 109.47133 * 60.00455 * 16 14 13 47 47 H 1.09004 * 109.46713 * 180.02562 * 16 14 13 48 48 H 1.08996 * 109.47365 * 300.00099 * 16 14 13 49 49 H 1.09006 * 109.46826 * 300.00044 * 17 14 13 50 50 H 1.09001 * 109.47338 * 59.99966 * 17 14 13 51 51 H 0.97000 * 120.00138 * 179.97438 * 21 20 18 52 52 H 1.08008 * 119.97007 * 179.97438 * 26 6 5 53 53 H 1.08001 * 120.02451 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3751 -0.0058 5 6 1.9210 3.6048 -0.0010 6 6 3.3018 3.6758 -0.0011 7 6 3.9860 5.0186 -0.0011 8 6 4.2180 5.4727 -1.4436 9 1 4.7709 4.7032 -1.9822 10 6 2.8696 5.7054 -2.1282 11 6 5.0223 6.7743 -1.4454 12 7 5.3478 7.1468 -2.8286 13 6 6.1222 8.3945 -2.8695 14 6 6.4421 8.7488 -4.3231 15 6 7.2594 7.6203 -4.9551 16 6 5.1381 8.9321 -5.1021 17 6 7.2491 10.0479 -4.3656 18 6 7.5637 10.3973 -5.7973 19 1 7.2225 9.7566 -6.5970 20 6 8.2871 11.5349 -6.0865 21 7 8.7021 12.3154 -5.1128 22 14 8.6776 11.9675 -7.8613 23 1 7.4120 12.1454 -8.6174 24 1 9.4598 13.2292 -7.9026 25 1 9.4709 10.8724 -8.4747 26 6 4.0560 2.5170 -0.0005 27 6 3.4313 1.2849 -0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2129 2.3201 -0.0099 32 1 1.3341 4.5114 -0.0014 33 1 3.3578 5.7465 0.5124 34 1 4.9437 4.9384 0.5131 35 1 3.0350 6.0293 -3.1557 36 1 2.2967 4.7782 -2.1268 37 1 2.3167 6.4749 -1.5894 38 1 4.4321 7.5667 -0.9851 39 1 5.9439 6.6328 -0.8808 40 1 4.5122 7.2209 -3.3894 41 1 5.5400 9.1983 -2.4189 42 1 7.0514 8.2638 -2.3148 43 1 6.6849 6.6946 -4.9248 44 1 7.4877 7.8730 -5.9905 45 1 8.1884 7.4898 -4.4001 46 1 4.5558 9.7360 -4.6519 47 1 5.3661 9.1841 -6.1379 48 1 4.5636 8.0064 -5.0718 49 1 6.6672 10.8521 -3.9152 50 1 8.1781 9.9169 -3.8107 51 1 9.2113 13.1155 -5.3161 52 1 5.1345 2.5751 -0.0009 53 1 4.0209 0.3801 -0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157923422.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:58 Heat of formation + Delta-G solvation = -61.730676 kcal Electronic energy + Delta-G solvation = -26376.169401 eV Core-core repulsion = 22825.094454 eV Total energy + Delta-G solvation = -3551.074947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10342 -39.52563 -38.81522 -37.09309 -34.87385 -33.65742 -31.99360 -31.13471 -29.02649 -28.43833 -27.88878 -27.59642 -26.94360 -25.47559 -23.81499 -23.52320 -22.09565 -20.82963 -19.45728 -19.05071 -18.32032 -17.19453 -17.10731 -16.62509 -16.58432 -16.28407 -15.76326 -15.59668 -15.40546 -15.05042 -14.72145 -14.60223 -14.44180 -14.29950 -13.96536 -13.90279 -13.73923 -13.37065 -13.20709 -12.99026 -12.77698 -12.73736 -12.70784 -12.54004 -12.37145 -12.23649 -12.21900 -12.06532 -11.93086 -11.71947 -11.57725 -11.50083 -11.50038 -11.33862 -10.84523 -10.68459 -10.49030 -9.89848 -9.22888 -8.97527 -8.12913 -6.20011 0.43322 0.48947 1.41440 1.43781 1.51064 2.42041 2.44555 2.80919 3.20686 3.34697 3.86984 3.89195 4.00290 4.06952 4.15326 4.24478 4.28294 4.31104 4.35745 4.39121 4.41452 4.49823 4.50967 4.66879 4.72848 4.74916 4.78549 4.82140 4.85112 4.90890 4.98046 4.99330 5.07061 5.09006 5.13432 5.18673 5.22591 5.22694 5.38439 5.42240 5.46093 5.50280 5.52669 5.54914 5.59697 5.67478 5.79050 5.88609 5.88907 5.93786 6.16527 6.38816 6.48558 6.59836 6.94840 7.47110 8.99103 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.034251 B = 0.001799 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.288160 B =15562.768884 C =15715.745545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.104 3.896 4 C -0.211 4.211 5 C -0.080 4.080 6 C -0.117 4.117 7 C -0.067 4.067 8 C -0.073 4.073 9 H 0.070 0.930 10 C -0.149 4.149 11 C 0.063 3.937 12 N -0.685 5.685 13 C 0.082 3.918 14 C -0.057 4.057 15 C -0.106 4.106 16 C -0.122 4.122 17 C 0.040 3.960 18 C -0.516 4.516 19 H 0.066 0.934 20 C -0.005 4.005 21 N -0.937 5.937 22 Si 0.957 3.043 23 H -0.268 1.268 24 H -0.288 1.288 25 H -0.269 1.269 26 C -0.084 4.084 27 C -0.166 4.166 28 H 0.116 0.884 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.028 0.972 39 H 0.067 0.933 40 H 0.343 0.657 41 H 0.016 0.984 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.038 0.962 45 H 0.029 0.971 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.066 0.934 49 H -0.016 1.016 50 H -0.016 1.016 51 H 0.259 0.741 52 H 0.139 0.861 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.173 -22.896 12.521 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.059 3.941 4 C -0.230 4.230 5 C -0.098 4.098 6 C -0.117 4.117 7 C -0.104 4.104 8 C -0.092 4.092 9 H 0.088 0.912 10 C -0.206 4.206 11 C -0.067 4.067 12 N -0.318 5.318 13 C -0.047 4.047 14 C -0.057 4.057 15 C -0.164 4.164 16 C -0.179 4.179 17 C 0.003 3.997 18 C -0.554 4.554 19 H 0.084 0.916 20 C -0.202 4.202 21 N -0.578 5.578 22 Si 0.782 3.218 23 H -0.193 1.193 24 H -0.214 1.214 25 H -0.194 1.194 26 C -0.102 4.102 27 C -0.184 4.184 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.163 0.837 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.002 0.998 50 H 0.002 0.998 51 H 0.068 0.932 52 H 0.157 0.843 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.461 -23.340 12.522 31.725 hybrid contribution -0.242 1.540 -0.506 1.639 sum -17.703 -21.800 12.016 30.546 Atomic orbital electron populations 1.23299 0.76674 1.05396 1.02113 1.86036 1.23306 1.27176 1.88903 1.19250 0.92730 0.84671 0.97442 1.21441 1.00895 0.92064 1.08568 1.21073 0.94104 0.97502 0.97073 1.19889 0.93805 0.95336 1.02662 1.20534 1.00781 0.92958 0.96157 1.20996 0.96135 0.96240 0.95816 0.91177 1.21906 0.96594 1.01880 1.00264 1.22044 0.98972 0.96243 0.89396 1.60528 1.26294 1.33240 1.11710 1.21799 0.97043 0.89612 0.96247 1.20509 0.95899 0.95513 0.93789 1.21495 0.98329 0.97294 0.99240 1.21678 0.95945 1.00105 1.00172 1.18999 0.93249 0.91937 0.95534 1.21598 1.32760 1.07337 0.93686 0.91630 1.25929 0.96260 0.96710 1.01253 1.70103 1.39063 1.15049 1.33627 0.85621 0.78480 0.77389 0.80287 1.19281 1.21352 1.19386 1.21081 1.00629 0.90947 0.97517 1.20617 0.91763 0.99156 1.06880 0.86542 0.91796 0.91950 0.83889 0.84427 0.90348 0.90473 0.93039 0.92016 0.92359 0.95342 0.91464 0.83663 0.96591 0.92625 0.91435 0.94323 0.95141 0.94459 0.93446 0.91534 0.99795 0.99799 0.93192 0.84327 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -5.93 10.50 -92.48 -0.97 -6.90 16 3 C 0.10 1.90 6.69 22.50 0.15 2.05 16 4 C -0.21 -3.26 9.04 22.36 0.20 -3.05 16 5 C -0.08 -1.21 7.95 22.25 0.18 -1.03 16 6 C -0.12 -1.91 4.71 -19.85 -0.09 -2.00 16 7 C -0.07 -1.01 4.84 29.85 0.14 -0.86 16 8 C -0.07 -1.31 2.59 -10.79 -0.03 -1.34 16 9 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 10 C -0.15 -2.52 8.53 71.98 0.61 -1.91 16 11 C 0.06 1.39 5.14 86.30 0.44 1.83 16 12 N -0.68 -18.64 5.71 -513.87 -2.93 -21.58 16 13 C 0.08 2.84 4.65 86.30 0.40 3.24 16 14 C -0.06 -2.28 0.60 -52.18 -0.03 -2.31 16 15 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 16 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 17 C 0.04 2.12 4.04 29.84 0.12 2.24 16 18 C -0.52 -28.80 7.65 25.60 0.20 -28.60 16 19 H 0.07 3.50 5.68 -2.91 -0.02 3.49 16 20 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 21 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 22 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C -0.08 -1.42 9.69 22.25 0.22 -1.21 16 27 C -0.17 -3.02 9.99 22.36 0.22 -2.79 16 28 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.45 7.67 -2.39 -0.02 0.43 16 30 H 0.06 0.47 7.65 -2.39 -0.02 0.45 16 31 H 0.14 1.56 6.30 -2.91 -0.02 1.54 16 32 H 0.14 1.63 8.04 -2.91 -0.02 1.61 16 33 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 34 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 35 H 0.05 0.94 6.68 -2.39 -0.02 0.93 16 36 H 0.06 1.00 6.27 -2.39 -0.01 0.99 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.34 8.77 5.03 -89.69 -0.45 8.32 16 41 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 2.26 7.60 -2.39 -0.02 2.24 16 44 H 0.04 1.58 6.62 -2.39 -0.02 1.57 16 45 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.05 1.87 6.62 -2.38 -0.02 1.86 16 48 H 0.07 1.96 6.57 -2.39 -0.02 1.95 16 49 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 50 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 51 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 52 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 53 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -66.25 408.56 4.27 -61.97 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.41 Total: 18.78 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 5.46 Total: -41.66 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -2.65 Total: -78.94 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.97 Total: -6.90 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.25 4.27 -61.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157923422.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.240 kcal (2) G-P(sol) polarization free energy of solvation -66.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds