Wall clock time and date at job start Tue Mar 31 2020 12:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 C 1.50697 * 119.94043 * 180.27986 * 6 5 4 8 8 H 1.08998 * 109.47248 * 180.32368 * 7 6 5 9 9 C 1.52997 * 109.47464 * 300.32624 * 7 6 5 10 10 C 1.53004 * 109.47165 * 60.32604 * 7 6 5 11 11 C 1.52994 * 109.47324 * 174.99516 * 10 7 6 12 12 N 1.46896 * 109.47400 * 179.97438 * 11 10 7 13 13 C 1.46898 * 111.00456 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47368 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.46999 * 299.99999 * 14 13 12 16 16 C 1.53001 * 109.47159 * 59.99952 * 14 13 12 17 17 C 1.52994 * 109.47212 * 179.97438 * 14 13 12 18 18 C 1.50704 * 109.47509 * 180.02562 * 17 14 13 19 19 H 1.08004 * 119.99311 * 0.02562 * 18 17 14 20 20 C 1.37874 * 120.00445 * 180.02562 * 18 17 14 21 21 N 1.31517 * 119.99825 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00060 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47250 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47067 * 119.99822 * 22 20 18 25 25 H 1.48502 * 109.47346 * 239.99564 * 22 20 18 26 26 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 27 27 C 1.38146 * 120.05909 * 359.67357 * 26 6 5 28 28 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 29 29 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 30 30 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 33 33 H 1.09009 * 109.47314 * 60.00045 * 9 7 6 34 34 H 1.09000 * 109.47122 * 179.97438 * 9 7 6 35 35 H 1.08999 * 109.47351 * 300.00005 * 9 7 6 36 36 H 1.08996 * 109.46942 * 295.00098 * 10 7 6 37 37 H 1.09005 * 109.46989 * 55.00064 * 10 7 6 38 38 H 1.08996 * 109.47565 * 300.00744 * 11 10 7 39 39 H 1.09005 * 109.46641 * 60.00334 * 11 10 7 40 40 H 1.00898 * 111.00033 * 56.04818 * 12 11 10 41 41 H 1.09000 * 109.47297 * 300.00271 * 13 12 11 42 42 H 1.08999 * 109.47067 * 60.00150 * 13 12 11 43 43 H 1.09001 * 109.47109 * 60.00297 * 15 14 13 44 44 H 1.09001 * 109.46939 * 179.97438 * 15 14 13 45 45 H 1.08999 * 109.47282 * 299.99819 * 15 14 13 46 46 H 1.09003 * 109.47086 * 59.99764 * 16 14 13 47 47 H 1.08993 * 109.47204 * 180.02562 * 16 14 13 48 48 H 1.09002 * 109.46930 * 300.00238 * 16 14 13 49 49 H 1.09000 * 109.47481 * 300.00225 * 17 14 13 50 50 H 1.09007 * 109.46848 * 59.99935 * 17 14 13 51 51 H 0.96996 * 120.00007 * 180.02562 * 21 20 18 52 52 H 1.08006 * 119.97147 * 179.69567 * 26 6 5 53 53 H 1.07993 * 120.03340 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 6 3.9862 5.0184 -0.0018 8 1 3.2356 5.8087 -0.0013 9 6 4.8612 5.1453 1.2468 10 6 4.8596 5.1453 -1.2516 11 6 5.4556 6.5529 -1.3165 12 7 6.2946 6.6747 -2.5162 13 6 6.8855 8.0162 -2.6115 14 6 7.7499 8.1044 -3.8709 15 6 8.8654 7.0598 -3.7980 16 6 6.8834 7.8400 -5.1038 17 6 8.3648 9.5018 -3.9705 18 6 9.2157 9.5890 -5.2113 19 1 9.3083 8.7333 -5.8637 20 6 9.8760 10.7610 -5.5135 21 7 9.7629 11.8031 -4.7192 22 14 10.9301 10.8692 -7.0518 23 1 10.8919 9.5703 -7.7704 24 1 10.4061 11.9406 -7.9366 25 1 12.3308 11.1827 -6.6710 26 6 1.9212 3.6047 -0.0004 27 6 1.2916 2.3751 0.0001 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0209 0.3797 -0.0005 32 1 5.1346 2.5748 0.0090 33 1 5.6120 4.3550 1.2463 34 1 5.3565 6.1163 1.2462 35 1 4.2391 5.0549 2.1372 36 1 5.6644 4.4116 -1.2085 37 1 4.2522 4.9668 -2.1390 38 1 4.6508 7.2867 -1.3596 39 1 6.0630 6.7315 -0.4292 40 1 5.7702 6.4502 -3.3485 41 1 6.0908 8.7604 -2.6639 42 1 7.5025 8.2047 -1.7330 43 1 8.4269 6.0644 -3.7273 44 1 9.4809 7.1224 -4.6954 45 1 9.4827 7.2482 -2.9197 46 1 6.0886 8.5842 -5.1557 47 1 7.4992 7.9025 -6.0009 48 1 6.4449 6.8446 -5.0331 49 1 7.5698 10.2458 -4.0226 50 1 8.9820 9.6906 -3.0921 51 1 10.2271 12.6278 -4.9320 52 1 1.3343 4.5114 -0.0003 53 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174507631.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:45 Heat of formation + Delta-G solvation = -62.180063 kcal Electronic energy + Delta-G solvation = -26202.108848 eV Core-core repulsion = 22651.014414 eV Total energy + Delta-G solvation = -3551.094434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13575 -39.45688 -38.91478 -36.84099 -35.05859 -33.92043 -32.05013 -30.52359 -29.31531 -28.61364 -28.07309 -27.87649 -26.53247 -24.95976 -23.81038 -23.66114 -22.51468 -20.72313 -19.43946 -19.09047 -18.32655 -17.24906 -16.93523 -16.63748 -16.61888 -16.41182 -15.69785 -15.50991 -15.43157 -15.16196 -14.77415 -14.51831 -14.43199 -14.19320 -13.94185 -13.83096 -13.79317 -13.53266 -13.24541 -12.94766 -12.91983 -12.73846 -12.67807 -12.64579 -12.35745 -12.24194 -12.14565 -12.03277 -11.89973 -11.84153 -11.60283 -11.46859 -11.41140 -11.30188 -10.83970 -10.68603 -10.50518 -9.91889 -9.24352 -9.00062 -8.13532 -6.20451 0.42325 0.48087 1.40532 1.41587 1.53876 2.41239 2.44278 2.80699 3.20360 3.31068 3.80124 3.84659 3.97848 4.11257 4.15275 4.24162 4.28179 4.34701 4.38806 4.39423 4.47026 4.47771 4.53764 4.59504 4.67369 4.73183 4.77341 4.80111 4.81608 4.86317 4.97823 5.03085 5.09680 5.10337 5.14040 5.19526 5.23411 5.23641 5.35150 5.40440 5.43949 5.50493 5.53015 5.55239 5.59912 5.67651 5.79365 5.86815 5.88821 5.93907 6.15552 6.38600 6.47802 6.58800 6.94956 7.46880 8.98987 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.001778 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.050645 B =15747.735610 C =16072.623254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.105 3.895 4 C -0.165 4.165 5 C -0.078 4.078 6 C -0.115 4.115 7 C -0.040 4.040 8 H 0.081 0.919 9 C -0.144 4.144 10 C -0.097 4.097 11 C 0.058 3.942 12 N -0.685 5.685 13 C 0.083 3.917 14 C -0.057 4.057 15 C -0.106 4.106 16 C -0.122 4.122 17 C 0.039 3.961 18 C -0.513 4.513 19 H 0.066 0.934 20 C -0.006 4.006 21 N -0.938 5.938 22 Si 0.957 3.043 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.283 1.283 26 C -0.085 4.085 27 C -0.210 4.210 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.071 0.929 40 H 0.342 0.658 41 H 0.016 0.984 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.037 0.963 45 H 0.030 0.970 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.067 0.933 49 H -0.016 1.016 50 H -0.016 1.016 51 H 0.259 0.741 52 H 0.139 0.861 53 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.954 -22.159 11.942 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.060 3.940 4 C -0.184 4.184 5 C -0.096 4.096 6 C -0.115 4.115 7 C -0.059 4.059 8 H 0.099 0.901 9 C -0.201 4.201 10 C -0.135 4.135 11 C -0.071 4.071 12 N -0.317 5.317 13 C -0.046 4.046 14 C -0.057 4.057 15 C -0.164 4.164 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.552 4.552 19 H 0.084 0.916 20 C -0.202 4.202 21 N -0.579 5.579 22 Si 0.783 3.217 23 H -0.185 1.185 24 H -0.208 1.208 25 H -0.209 1.209 26 C -0.103 4.103 27 C -0.229 4.229 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.089 0.911 40 H 0.162 0.838 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.002 0.998 50 H 0.002 0.998 51 H 0.068 0.932 52 H 0.157 0.843 53 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.278 -22.472 12.262 32.046 hybrid contribution -0.249 1.412 -0.883 1.683 sum -19.527 -21.060 11.379 30.892 Atomic orbital electron populations 1.23305 0.76653 1.05421 1.02120 1.86034 1.23323 1.27143 1.88876 1.19253 0.92722 0.84671 0.97370 1.20631 0.91762 0.99158 1.06812 1.20988 1.00543 0.90849 0.97214 1.19892 0.93640 0.95183 1.02788 1.20006 0.97159 0.93502 0.95220 0.90076 1.21890 0.99444 1.02205 0.96600 1.21516 0.98650 0.96046 0.97311 1.22057 0.94787 0.96774 0.93521 1.60501 1.38243 1.26983 1.05968 1.21795 0.96293 0.88842 0.97713 1.20510 0.95310 0.95839 0.94064 1.21495 0.97018 0.98029 0.99813 1.21683 0.98504 1.00101 0.97647 1.19015 0.93899 0.91772 0.95133 1.21664 1.27486 0.97613 1.08398 0.91592 1.25931 0.98511 0.95783 0.99992 1.70118 1.44989 1.03326 1.39504 0.85508 0.78296 0.78371 0.79552 1.18473 1.20812 1.20859 1.21121 0.94061 0.97694 0.97404 1.21435 1.00913 0.92006 1.08533 0.91785 0.91941 0.86512 0.84905 0.84509 0.92321 0.92154 0.92440 0.91147 0.92175 0.95609 0.91106 0.83833 0.96628 0.92607 0.91358 0.94345 0.95113 0.94501 0.93487 0.91396 0.99804 0.99769 0.93195 0.84323 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.90 10.50 -92.33 -0.97 -6.87 16 3 C 0.10 1.92 6.69 22.51 0.15 2.07 16 4 C -0.17 -3.02 9.99 22.37 0.22 -2.80 16 5 C -0.08 -1.34 8.75 22.26 0.19 -1.15 16 6 C -0.11 -1.91 4.78 -19.85 -0.09 -2.01 16 7 C -0.04 -0.62 2.56 -11.54 -0.03 -0.65 16 8 H 0.08 1.19 7.87 -2.39 -0.02 1.17 16 9 C -0.14 -2.19 8.76 71.98 0.63 -1.56 16 10 C -0.10 -1.77 4.69 30.59 0.14 -1.62 16 11 C 0.06 1.28 5.44 86.30 0.47 1.74 16 12 N -0.68 -18.61 5.71 -513.91 -2.94 -21.55 16 13 C 0.08 2.86 4.65 86.30 0.40 3.26 16 14 C -0.06 -2.28 0.60 -52.18 -0.03 -2.31 16 15 C -0.11 -4.08 8.06 71.98 0.58 -3.50 16 16 C -0.12 -4.44 7.89 71.98 0.57 -3.87 16 17 C 0.04 2.06 4.04 29.85 0.12 2.18 16 18 C -0.51 -28.68 7.65 25.60 0.20 -28.49 16 19 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 20 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 21 N -0.94 -57.72 13.29 21.45 0.28 -57.44 16 22 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 C -0.08 -1.32 9.66 22.25 0.22 -1.10 16 27 C -0.21 -3.26 9.04 22.37 0.20 -3.06 16 28 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 29 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.14 2.06 7.15 -2.91 -0.02 2.04 16 33 H 0.06 0.88 7.37 -2.38 -0.02 0.87 16 34 H 0.06 0.95 6.56 -2.39 -0.02 0.93 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 1.34 7.58 -2.39 -0.02 1.32 16 37 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.07 1.61 6.56 -2.38 -0.02 1.59 16 40 H 0.34 8.73 6.77 -89.70 -0.61 8.12 16 41 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 44 H 0.04 1.57 6.62 -2.39 -0.02 1.56 16 45 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 48 H 0.07 2.00 6.57 -2.39 -0.02 1.98 16 49 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 50 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 51 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 52 H 0.14 1.64 7.94 -2.91 -0.02 1.61 16 53 H 0.14 1.56 6.30 -2.91 -0.02 1.54 16 Total: -1.00 -66.34 409.19 4.18 -62.16 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.26 Total: 18.32 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 5.51 Total: -41.44 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -2.65 Total: -78.98 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.97 Total: -6.87 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.34 4.18 -62.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174507631.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.021 kcal (2) G-P(sol) polarization free energy of solvation -66.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds