Wall clock time and date at job start Tue Mar 31 2020 12:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47362 * 2 1 4 4 H 1.09006 * 109.47234 * 304.99760 * 3 2 1 5 5 C 1.53005 * 109.47405 * 184.99991 * 3 2 1 6 6 N 1.46901 * 109.47231 * 180.02562 * 5 3 2 7 7 C 1.46900 * 110.99996 * 180.02562 * 6 5 3 8 8 C 1.52995 * 109.47204 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.46944 * 299.99585 * 8 7 6 10 10 C 1.53000 * 109.47146 * 59.99630 * 8 7 6 11 11 C 1.53006 * 109.47129 * 179.97438 * 8 7 6 12 12 C 1.50699 * 109.46840 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00608 * 359.97438 * 12 11 8 14 14 C 1.37883 * 119.99824 * 179.97438 * 12 11 8 15 15 N 1.31509 * 119.99684 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 119.99939 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47746 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47403 * 120.00351 * 16 14 12 19 19 H 1.48506 * 109.47251 * 239.99803 * 16 14 12 20 20 O 1.42902 * 109.47461 * 65.00027 * 3 2 1 21 21 C 1.35902 * 116.99562 * 265.87099 * 20 3 2 22 22 C 1.38748 * 120.06222 * 357.68975 * 21 20 3 23 23 C 1.38124 * 119.94733 * 180.32164 * 22 21 20 24 24 C 1.38287 * 120.05222 * 359.67470 * 23 22 21 25 25 C 1.38231 * 120.11367 * 0.02834 * 24 23 22 26 26 C 1.38170 * 120.05849 * 0.02562 * 25 24 23 27 27 C 1.50699 * 120.03026 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47326 * 60.00089 * 1 2 3 29 29 H 1.08999 * 109.47535 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47078 * 300.00263 * 1 2 3 31 31 H 1.08993 * 109.47613 * 239.99683 * 2 1 3 32 32 H 1.09010 * 109.46866 * 119.99702 * 2 1 3 33 33 H 1.08998 * 109.46994 * 299.99815 * 5 3 2 34 34 H 1.08996 * 109.46828 * 59.99874 * 5 3 2 35 35 H 1.00903 * 110.99675 * 303.95271 * 6 5 3 36 36 H 1.09000 * 109.46678 * 299.99807 * 7 6 5 37 37 H 1.08997 * 109.47301 * 59.99208 * 7 6 5 38 38 H 1.08996 * 109.46890 * 60.00407 * 9 8 7 39 39 H 1.09004 * 109.46655 * 179.97438 * 9 8 7 40 40 H 1.08998 * 109.47388 * 299.99844 * 9 8 7 41 41 H 1.09000 * 109.46978 * 60.00587 * 10 8 7 42 42 H 1.09000 * 109.46845 * 179.97438 * 10 8 7 43 43 H 1.08996 * 109.47521 * 300.00104 * 10 8 7 44 44 H 1.09003 * 109.46529 * 299.99566 * 11 8 7 45 45 H 1.08998 * 109.46774 * 59.99613 * 11 8 7 46 46 H 0.97004 * 120.00393 * 180.02562 * 15 14 12 47 47 H 1.08002 * 120.02580 * 0.02562 * 22 21 20 48 48 H 1.08000 * 119.97211 * 179.70304 * 23 22 21 49 49 H 1.08008 * 119.93883 * 180.02562 * 24 23 22 50 50 H 1.08003 * 119.97278 * 179.97438 * 25 24 23 51 51 H 1.09002 * 109.46927 * 89.99941 * 27 26 25 52 52 H 1.09003 * 109.47125 * 329.99896 * 27 26 25 53 53 H 1.09001 * 109.47242 * 210.00116 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0546 2.8292 -0.1251 7 6 5.5181 2.8702 -0.2452 8 6 5.9896 4.3256 -0.2416 9 6 5.3601 5.0685 -1.4218 10 6 5.5663 4.9957 1.0671 11 6 7.5140 4.3682 -0.3661 12 6 7.9783 5.8019 -0.3632 13 1 7.2582 6.6027 -0.2812 14 6 9.3225 6.0914 -0.4652 15 7 10.1993 5.1164 -0.5655 16 14 9.8980 7.8685 -0.4623 17 1 8.7235 8.7691 -0.3414 18 1 10.8131 8.0906 0.6860 19 1 10.6151 8.1586 -1.7300 20 8 1.6620 2.0814 1.2210 21 6 0.5058 2.7956 1.2114 22 6 -0.2248 2.9195 0.0384 23 6 -1.3961 3.6514 0.0297 24 6 -1.8443 4.2549 1.1904 25 6 -1.1215 4.1278 2.3618 26 6 0.0514 3.3976 2.3755 27 6 0.8392 3.2600 3.6528 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 3.9994 0.9053 0.7161 34 1 3.8531 0.9569 -1.0571 35 1 3.6168 3.3679 -0.8574 36 1 5.9665 2.3405 0.5953 37 1 5.8196 2.3932 -1.1777 38 1 4.2742 5.0382 -1.3327 39 1 5.6957 6.1056 -1.4190 40 1 5.6617 4.5913 -2.3542 41 1 6.0148 4.4664 1.9078 42 1 5.9026 6.0325 1.0698 43 1 4.4804 4.9653 1.1562 44 1 7.9620 3.8391 0.4750 45 1 7.8158 3.8907 -1.2983 46 1 11.1451 5.3199 -0.6369 47 1 0.1246 2.4480 -0.8683 48 1 -1.9627 3.7522 -0.8843 49 1 -2.7607 4.8265 1.1816 50 1 -1.4734 4.6004 3.2669 51 1 0.4985 2.3789 4.1966 52 1 0.6908 4.1471 4.2686 53 1 1.8982 3.1545 3.4170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178615744.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:18 Heat of formation + Delta-G solvation = -37.467909 kcal Electronic energy + Delta-G solvation = -27754.927065 eV Core-core repulsion = 24204.904231 eV Total energy + Delta-G solvation = -3550.022835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.59590 -38.18503 -37.33574 -34.75978 -33.52681 -32.55252 -32.08500 -30.25196 -28.44579 -26.88125 -26.70493 -26.28903 -25.09233 -23.39155 -23.07136 -21.85815 -21.62630 -20.47100 -18.40522 -17.83869 -16.32285 -16.11786 -15.87578 -15.71407 -15.15810 -14.95510 -14.72275 -14.19745 -13.96576 -13.91542 -13.51380 -13.29490 -13.18791 -13.13330 -12.77321 -12.60371 -12.50770 -12.29823 -12.02108 -11.98434 -11.89838 -11.70740 -11.47329 -11.30729 -11.25176 -10.97112 -10.85426 -10.75658 -10.71825 -10.48203 -10.41183 -10.22688 -10.06953 -9.65509 -8.99074 -8.88210 -8.79718 -8.30161 -8.08983 -8.04243 -5.94572 -3.94325 1.24073 1.40637 3.17041 3.33682 3.41538 3.45378 3.68338 4.17699 4.50726 4.57181 4.66258 4.73313 4.82346 4.90140 4.96824 5.06146 5.20668 5.25780 5.28492 5.41413 5.42574 5.46841 5.58019 5.61068 5.67151 5.68704 5.71052 5.77923 5.79949 5.81904 5.88066 6.00325 6.01921 6.20961 6.25751 6.28324 6.36367 6.40418 6.47155 6.53729 6.71765 6.75139 6.82145 6.87140 7.23644 7.23920 7.30630 7.40033 7.47360 7.66754 7.73254 7.88082 8.06099 8.50879 9.11330 9.68427 11.17205 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.002787 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.446409 B =10044.422153 C =10854.676695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.143 4.143 3 C 0.084 3.916 4 H 0.074 0.926 5 C 0.058 3.942 6 N -0.679 5.679 7 C 0.071 3.929 8 C -0.058 4.058 9 C -0.128 4.128 10 C -0.115 4.115 11 C 0.034 3.966 12 C -0.505 4.505 13 H 0.059 0.941 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 O -0.283 6.283 21 C 0.146 3.854 22 C -0.211 4.211 23 C -0.088 4.088 24 C -0.163 4.163 25 C -0.085 4.085 26 C -0.120 4.120 27 C -0.105 4.105 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.335 0.665 36 H 0.067 0.933 37 H 0.022 0.978 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.258 0.742 47 H 0.129 0.871 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.124 0.876 51 H 0.063 0.937 52 H 0.061 0.939 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.164 -8.872 2.036 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.182 4.182 3 C 0.028 3.972 4 H 0.092 0.908 5 C -0.071 4.071 6 N -0.310 5.310 7 C -0.057 4.057 8 C -0.058 4.058 9 C -0.186 4.186 10 C -0.172 4.172 11 C -0.004 4.004 12 C -0.543 4.543 13 H 0.078 0.922 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.212 1.212 20 O -0.196 6.196 21 C 0.100 3.900 22 C -0.230 4.230 23 C -0.106 4.106 24 C -0.182 4.182 25 C -0.103 4.103 26 C -0.121 4.121 27 C -0.162 4.162 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.154 0.846 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.030 0.970 46 H 0.067 0.933 47 H 0.146 0.854 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.142 0.858 51 H 0.081 0.919 52 H 0.080 0.920 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.815 -8.895 2.866 25.583 hybrid contribution 0.543 0.653 -1.315 1.565 sum -23.272 -8.243 1.551 24.737 Atomic orbital electron populations 1.21925 0.95282 1.01856 1.02238 1.22013 0.96698 0.96091 1.03357 1.22624 0.95462 0.92550 0.86603 0.90798 1.22089 0.91948 0.92064 1.01041 1.60505 1.07209 1.10024 1.53297 1.22111 0.85684 0.98710 0.99221 1.20623 0.98750 0.91307 0.95147 1.21765 0.97444 1.01904 0.97459 1.21582 0.99076 1.00423 0.96128 1.19126 0.87365 0.97103 0.96777 1.21284 0.91686 0.92467 1.48898 0.92241 1.25017 0.97102 0.96784 0.95742 1.69976 1.01567 1.31104 1.51163 0.86613 0.78762 0.85645 0.77451 1.19763 1.21150 1.21222 1.86212 1.36199 1.62144 1.35000 1.18820 0.86000 0.91849 0.93381 1.21297 0.98172 1.05705 0.97790 1.20865 0.95543 0.96123 0.98046 1.20960 1.01104 1.02963 0.93133 1.20861 0.93642 0.97575 0.98195 1.19279 0.97109 1.01307 0.94409 1.20607 1.00595 1.01468 0.93541 0.92609 0.92576 0.92128 0.90505 0.90628 0.90088 0.93823 0.84575 0.91500 0.95979 0.94899 0.91722 0.94180 0.94222 0.92821 0.93790 0.96680 0.96983 0.93250 0.85361 0.86304 0.86350 0.85798 0.91861 0.91963 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.45 37.15 0.31 -0.96 16 2 C -0.14 -1.23 5.64 -26.74 -0.15 -1.38 16 3 C 0.08 0.88 2.37 -26.73 -0.06 0.82 16 4 H 0.07 0.74 5.38 -51.93 -0.28 0.46 16 5 C 0.06 0.69 5.38 -3.82 -0.02 0.67 16 6 N -0.68 -9.90 5.58 -113.78 -0.63 -10.54 16 7 C 0.07 1.23 4.65 -3.83 -0.02 1.22 16 8 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 9 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 10 C -0.11 -2.30 8.06 37.16 0.30 -2.00 16 11 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 12 C -0.50 -13.94 7.65 -34.44 -0.26 -14.20 16 13 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -27.03 13.28 55.43 0.74 -26.29 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 O -0.28 -3.56 8.57 -19.43 -0.17 -3.73 16 21 C 0.15 1.76 5.30 -39.22 -0.21 1.55 16 22 C -0.21 -2.24 7.16 -39.43 -0.28 -2.52 16 23 C -0.09 -0.85 10.04 -39.61 -0.40 -1.25 16 24 C -0.16 -1.56 10.04 -39.57 -0.40 -1.96 16 25 C -0.08 -0.86 9.70 -39.61 -0.38 -1.25 16 26 C -0.12 -1.41 5.89 -104.47 -0.62 -2.02 16 27 C -0.11 -1.14 9.80 36.01 0.35 -0.78 16 28 H 0.05 0.42 6.80 -51.93 -0.35 0.07 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.59 6.27 -51.93 -0.33 0.26 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.34 4.75 6.77 -39.29 -0.27 4.49 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 39 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 43 H 0.04 0.81 7.60 -51.93 -0.39 0.42 16 44 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.13 1.20 4.54 -52.49 -0.24 0.96 16 48 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 50 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 51 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 53 H 0.08 0.96 7.52 -51.93 -0.39 0.57 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -30.25 405.05 -10.30 -40.55 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -9.47 Total: 2.41 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -1.84 Total: -25.27 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.10 Total: -36.82 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.17 Total: -3.73 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.25 -10.30 -40.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178615744.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.078 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds