Wall clock time and date at job start Tue Mar 31 2020 12:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47331 * 2 1 4 4 H 1.08994 * 109.47274 * 54.13913 * 3 2 1 5 5 C 1.53007 * 109.47067 * 294.13887 * 3 2 1 6 6 C 1.50701 * 109.47111 * 174.14274 * 3 2 1 7 7 O 1.21279 * 120.00415 * 25.65758 * 6 3 2 8 8 N 1.34778 * 119.99715 * 205.93654 * 6 3 2 9 9 C 1.46496 * 120.00183 * 5.12145 * 8 6 3 10 10 C 1.50696 * 109.47395 * 85.80200 * 9 8 6 11 11 H 1.08005 * 119.99916 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00161 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00164 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99875 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46724 * 90.00393 * 14 12 10 16 16 H 1.48498 * 109.46899 * 209.99866 * 14 12 10 17 17 H 1.48493 * 109.47498 * 330.00427 * 14 12 10 18 18 C 1.46499 * 119.99697 * 185.12173 * 8 6 3 19 19 C 1.52998 * 109.47643 * 60.00172 * 18 8 6 20 20 C 1.52996 * 109.47256 * 180.02562 * 19 18 8 21 21 C 1.52991 * 109.47631 * 59.99550 * 20 19 18 22 22 C 1.52995 * 109.47289 * 300.00143 * 21 20 19 23 23 C 1.52999 * 109.47220 * 299.99981 * 22 21 20 24 24 C 1.53005 * 109.47113 * 59.99792 * 23 22 21 25 25 C 1.53003 * 109.46838 * 299.99994 * 24 23 22 26 26 C 1.52994 * 109.47020 * 60.00138 * 24 23 22 27 27 C 1.52999 * 109.47120 * 299.99521 * 18 8 6 28 28 H 1.09005 * 109.46542 * 299.99750 * 1 2 3 29 29 H 1.08999 * 109.47173 * 59.99757 * 1 2 3 30 30 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47056 * 240.00330 * 2 1 3 32 32 H 1.09002 * 109.47662 * 120.00116 * 2 1 3 33 33 H 1.08998 * 109.46835 * 60.00032 * 5 3 2 34 34 H 1.08999 * 109.46721 * 180.02562 * 5 3 2 35 35 H 1.08994 * 109.47095 * 300.00136 * 5 3 2 36 36 H 1.09001 * 109.47207 * 205.80181 * 9 8 6 37 37 H 1.09005 * 109.47182 * 325.79900 * 9 8 6 38 38 H 0.96995 * 120.00238 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.46684 * 300.00227 * 19 18 8 40 40 H 1.08995 * 109.46998 * 59.99346 * 19 18 8 41 41 H 1.09002 * 109.47127 * 179.97438 * 20 19 18 42 42 H 1.08997 * 109.47671 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.47121 * 60.00425 * 21 20 19 44 44 H 1.09000 * 109.47623 * 179.97438 * 22 21 20 45 45 H 1.09005 * 109.47133 * 299.99658 * 23 22 21 46 46 H 1.09002 * 109.47124 * 179.97438 * 23 22 21 47 47 H 1.09001 * 109.46892 * 180.02562 * 24 23 22 48 48 H 1.08995 * 109.46709 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.47189 * 300.00076 * 25 24 23 50 50 H 1.08995 * 109.47357 * 180.02562 * 26 24 23 51 51 H 1.09002 * 109.47293 * 59.99964 * 26 24 23 52 52 H 1.08999 * 109.47554 * 300.00132 * 27 18 8 53 53 H 1.09005 * 109.46993 * 60.00784 * 27 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5936 1.9857 0.8328 5 6 1.6539 2.1200 -1.3164 6 6 3.5401 1.4449 0.1450 7 8 4.1859 0.4842 -0.2168 8 7 4.1634 2.5124 0.6820 9 6 3.3774 3.6220 1.2271 10 6 3.0086 3.3216 2.6570 11 1 3.3281 2.3967 3.1142 12 6 2.2641 4.2278 3.3819 13 7 1.8755 5.3542 2.8254 14 14 1.8063 3.8550 5.1542 15 1 2.8628 4.3761 6.0584 16 1 0.5118 4.5062 5.4785 17 1 1.6806 2.3864 5.3346 18 6 5.6270 2.5631 0.7205 19 6 6.1776 2.4922 -0.7052 20 6 7.7062 2.5445 -0.6648 21 6 8.2358 1.3601 0.1460 22 6 7.6853 1.4311 1.5717 23 6 8.1336 2.7389 2.2270 24 6 7.6039 3.9234 1.4162 25 6 8.1546 3.8524 -0.0095 26 6 6.0754 3.8710 1.3759 27 6 6.1572 1.3790 1.5315 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 0.5689 2.1182 -1.4213 34 1 2.0177 3.1475 -1.3166 35 1 2.1003 1.5767 -2.1492 36 1 3.9669 4.5381 1.1887 37 1 2.4699 3.7489 0.6367 38 1 1.3521 5.9919 3.3355 39 1 5.8585 1.5603 -1.1719 40 1 5.7999 3.3358 -1.2829 41 1 8.0984 2.4935 -1.6805 42 1 9.3248 1.3971 0.1744 43 1 7.9165 0.4284 -0.3209 44 1 8.0623 0.5870 2.1492 45 1 9.2227 2.7762 2.2558 46 1 7.7410 2.7896 3.2426 47 1 7.9237 4.8551 1.8829 48 1 7.7768 4.6960 -0.5872 49 1 9.2435 3.8897 0.0193 50 1 5.6980 4.7145 0.7979 51 1 5.6832 3.9215 2.3916 52 1 5.7650 1.4296 2.5473 53 1 5.8381 0.4470 1.0648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185096621.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:40 Heat of formation + Delta-G solvation = -75.719428 kcal Electronic energy + Delta-G solvation = -30419.969445 eV Core-core repulsion = 26868.287901 eV Total energy + Delta-G solvation = -3551.681545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.30189 -38.87867 -35.22768 -34.78348 -32.68009 -32.27953 -32.23985 -30.70208 -28.94909 -27.17907 -25.53533 -25.44794 -24.76586 -22.88275 -22.01874 -21.11462 -20.88317 -19.81618 -17.85102 -17.19694 -16.56531 -16.03612 -15.52670 -14.61997 -14.50270 -14.28412 -14.13749 -14.04808 -14.00193 -13.59308 -13.06635 -12.96291 -12.94459 -12.74533 -12.52523 -12.26050 -12.10347 -11.99971 -11.95135 -11.72705 -11.39279 -11.24176 -11.08071 -10.96734 -10.81968 -10.64145 -10.50880 -10.45145 -10.38371 -10.34748 -10.27939 -10.18097 -9.97701 -9.83587 -9.69370 -9.34594 -9.26459 -8.58957 -8.38550 -7.54142 -6.15833 -4.22172 3.22517 3.30210 3.33439 3.54045 3.94402 4.34922 4.83798 4.85923 4.99233 5.16509 5.29246 5.34000 5.43007 5.44862 5.47326 5.57860 5.58720 5.60039 5.67687 5.70754 5.76999 5.84481 5.85684 5.90747 5.93070 5.99396 6.10176 6.11758 6.14513 6.25379 6.26810 6.29024 6.32657 6.38396 6.40958 6.43794 6.44625 6.45656 6.54199 6.58936 6.68779 6.72629 6.75024 6.83275 6.87951 6.95279 7.00299 7.05394 7.29782 7.69712 7.82057 8.11500 8.47864 8.85756 9.17531 9.45540 10.90276 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.006460 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.767948 B = 4333.618668 C = 5953.243605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.115 4.115 4 H 0.111 0.889 5 C -0.135 4.135 6 C 0.526 3.474 7 O -0.573 6.573 8 N -0.590 5.590 9 C 0.230 3.770 10 C -0.530 4.530 11 H 0.059 0.941 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.195 3.805 19 C -0.120 4.120 20 C -0.080 4.080 21 C -0.104 4.104 22 C -0.082 4.082 23 C -0.107 4.107 24 C -0.083 4.083 25 C -0.107 4.107 26 C -0.110 4.110 27 C -0.121 4.121 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.264 0.736 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.065 0.935 51 H 0.085 0.915 52 H 0.061 0.939 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 -3.974 -5.692 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.138 4.138 3 C -0.136 4.136 4 H 0.129 0.871 5 C -0.192 4.192 6 C 0.314 3.686 7 O -0.454 6.454 8 N -0.319 5.319 9 C 0.110 3.890 10 C -0.569 4.569 11 H 0.077 0.923 12 C -0.137 4.137 13 N -0.529 5.529 14 Si 0.718 3.282 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C 0.110 3.890 19 C -0.159 4.159 20 C -0.099 4.099 21 C -0.142 4.142 22 C -0.101 4.101 23 C -0.145 4.145 24 C -0.102 4.102 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.160 4.160 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.103 0.897 52 H 0.079 0.921 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.467 -4.256 -5.829 10.385 hybrid contribution -0.419 0.106 1.202 1.278 sum 7.047 -4.149 -4.627 9.396 Atomic orbital electron populations 1.21825 0.96126 1.00947 1.01979 1.21280 0.94906 0.95301 1.02309 1.21348 0.93237 0.98092 1.00931 0.87078 1.21690 1.01353 1.00514 0.95692 1.20420 0.89838 0.81827 0.76482 1.90498 1.67692 1.34750 1.52491 1.48363 1.05367 1.20649 1.57504 1.19543 0.91007 0.84778 0.93679 1.21484 1.33738 1.04632 0.97017 0.92291 1.24904 0.95626 0.94875 0.98257 1.69915 1.37228 1.08811 1.36978 0.86606 0.77947 0.78646 0.84973 1.20605 1.21123 1.19810 1.19949 0.80024 0.95077 0.93959 1.21896 0.94269 1.02600 0.97107 1.21000 0.95676 0.94929 0.98304 1.21506 0.99022 0.98107 0.95553 1.21025 0.96121 0.97158 0.95792 1.21555 0.99404 0.94563 0.98966 1.21066 0.95770 0.98015 0.95373 1.21564 0.99536 0.97281 0.96110 1.21808 0.93821 0.96354 1.02781 1.21928 0.93651 1.00010 1.00381 0.92501 0.92726 0.93246 0.91861 0.92149 0.91975 0.92209 0.93064 0.93891 0.94514 0.92636 0.90361 0.92694 0.91814 0.92660 0.92080 0.91818 0.92635 0.91945 0.91382 0.92221 0.92510 0.91610 0.89673 0.92071 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.68 37.16 0.36 -1.75 16 2 C -0.10 -1.66 4.83 -26.73 -0.13 -1.79 16 3 C -0.12 -2.13 1.88 -91.77 -0.17 -2.30 16 4 H 0.11 2.31 6.25 -51.93 -0.32 1.98 16 5 C -0.13 -2.18 8.77 37.16 0.33 -1.86 16 6 C 0.53 10.83 6.14 -10.98 -0.07 10.76 16 7 O -0.57 -12.46 12.47 5.56 0.07 -12.39 16 8 N -0.59 -12.20 2.42 -160.18 -0.39 -12.58 16 9 C 0.23 5.29 4.15 -5.20 -0.02 5.27 16 10 C -0.53 -13.40 8.34 -34.44 -0.29 -13.69 16 11 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 12 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -24.01 13.29 55.43 0.74 -23.28 16 14 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 18 C 0.19 3.59 0.78 -131.82 -0.10 3.49 16 19 C -0.12 -2.04 4.40 -26.73 -0.12 -2.16 16 20 C -0.08 -1.13 3.19 -90.62 -0.29 -1.42 16 21 C -0.10 -1.43 5.19 -26.74 -0.14 -1.57 16 22 C -0.08 -1.22 3.19 -90.64 -0.29 -1.51 16 23 C -0.11 -1.50 5.19 -26.73 -0.14 -1.64 16 24 C -0.08 -1.21 3.19 -90.62 -0.29 -1.50 16 25 C -0.11 -1.42 5.19 -26.73 -0.14 -1.56 16 26 C -0.11 -1.97 3.19 -26.73 -0.09 -2.05 16 27 C -0.12 -2.21 4.39 -26.75 -0.12 -2.33 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.70 6.59 -51.93 -0.34 0.36 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.89 6.59 -51.93 -0.34 0.54 16 34 H 0.06 1.01 7.23 -51.93 -0.38 0.64 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 1.04 5.58 -51.93 -0.29 0.75 16 37 H 0.04 0.88 5.59 -51.93 -0.29 0.59 16 38 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.08 1.47 6.36 -51.93 -0.33 1.14 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 1.22 6.91 -51.93 -0.36 0.86 16 51 H 0.08 1.74 7.37 -51.93 -0.38 1.36 16 52 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 53 H 0.08 1.69 5.99 -51.93 -0.31 1.38 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -26.65 376.98 -10.37 -37.03 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -9.65 Total: 6.10 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.80 Total: -15.98 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.35 Total: -35.86 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -26.65 -10.37 -37.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185096621.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.694 kcal (2) G-P(sol) polarization free energy of solvation -26.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds