Wall clock time and date at job start Tue Mar 31 2020 12:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47331 * 2 1 4 4 H 1.08994 * 109.47274 * 54.13913 * 3 2 1 5 5 C 1.53007 * 109.47067 * 294.13887 * 3 2 1 6 6 C 1.50701 * 109.47111 * 174.14274 * 3 2 1 7 7 O 1.21279 * 120.00415 * 25.65758 * 6 3 2 8 8 N 1.34778 * 119.99715 * 205.93654 * 6 3 2 9 9 C 1.46496 * 120.00183 * 5.12145 * 8 6 3 10 10 C 1.50696 * 109.47395 * 85.80200 * 9 8 6 11 11 H 1.08005 * 119.99916 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00161 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00164 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99875 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46724 * 90.00393 * 14 12 10 16 16 H 1.48498 * 109.46899 * 209.99866 * 14 12 10 17 17 H 1.48493 * 109.47498 * 330.00427 * 14 12 10 18 18 C 1.46499 * 119.99697 * 185.12173 * 8 6 3 19 19 C 1.52998 * 109.47643 * 60.00172 * 18 8 6 20 20 C 1.52996 * 109.47256 * 180.02562 * 19 18 8 21 21 C 1.52991 * 109.47631 * 59.99550 * 20 19 18 22 22 C 1.52995 * 109.47289 * 300.00143 * 21 20 19 23 23 C 1.52999 * 109.47220 * 299.99981 * 22 21 20 24 24 C 1.53005 * 109.47113 * 59.99792 * 23 22 21 25 25 C 1.53003 * 109.46838 * 299.99994 * 24 23 22 26 26 C 1.52994 * 109.47020 * 60.00138 * 24 23 22 27 27 C 1.52999 * 109.47120 * 299.99521 * 18 8 6 28 28 H 1.09005 * 109.46542 * 299.99750 * 1 2 3 29 29 H 1.08999 * 109.47173 * 59.99757 * 1 2 3 30 30 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47056 * 240.00330 * 2 1 3 32 32 H 1.09002 * 109.47662 * 120.00116 * 2 1 3 33 33 H 1.08998 * 109.46835 * 60.00032 * 5 3 2 34 34 H 1.08999 * 109.46721 * 180.02562 * 5 3 2 35 35 H 1.08994 * 109.47095 * 300.00136 * 5 3 2 36 36 H 1.09001 * 109.47207 * 205.80181 * 9 8 6 37 37 H 1.09005 * 109.47182 * 325.79900 * 9 8 6 38 38 H 0.96995 * 120.00238 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.46684 * 300.00227 * 19 18 8 40 40 H 1.08995 * 109.46998 * 59.99346 * 19 18 8 41 41 H 1.09002 * 109.47127 * 179.97438 * 20 19 18 42 42 H 1.08997 * 109.47671 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.47121 * 60.00425 * 21 20 19 44 44 H 1.09000 * 109.47623 * 179.97438 * 22 21 20 45 45 H 1.09005 * 109.47133 * 299.99658 * 23 22 21 46 46 H 1.09002 * 109.47124 * 179.97438 * 23 22 21 47 47 H 1.09001 * 109.46892 * 180.02562 * 24 23 22 48 48 H 1.08995 * 109.46709 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.47189 * 300.00076 * 25 24 23 50 50 H 1.08995 * 109.47357 * 180.02562 * 26 24 23 51 51 H 1.09002 * 109.47293 * 59.99964 * 26 24 23 52 52 H 1.08999 * 109.47554 * 300.00132 * 27 18 8 53 53 H 1.09005 * 109.46993 * 60.00784 * 27 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5936 1.9857 0.8328 5 6 1.6539 2.1200 -1.3164 6 6 3.5401 1.4449 0.1450 7 8 4.1859 0.4842 -0.2168 8 7 4.1634 2.5124 0.6820 9 6 3.3774 3.6220 1.2271 10 6 3.0086 3.3216 2.6570 11 1 3.3281 2.3967 3.1142 12 6 2.2641 4.2278 3.3819 13 7 1.8755 5.3542 2.8254 14 14 1.8063 3.8550 5.1542 15 1 2.8628 4.3761 6.0584 16 1 0.5118 4.5062 5.4785 17 1 1.6806 2.3864 5.3346 18 6 5.6270 2.5631 0.7205 19 6 6.1776 2.4922 -0.7052 20 6 7.7062 2.5445 -0.6648 21 6 8.2358 1.3601 0.1460 22 6 7.6853 1.4311 1.5717 23 6 8.1336 2.7389 2.2270 24 6 7.6039 3.9234 1.4162 25 6 8.1546 3.8524 -0.0095 26 6 6.0754 3.8710 1.3759 27 6 6.1572 1.3790 1.5315 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 0.5689 2.1182 -1.4213 34 1 2.0177 3.1475 -1.3166 35 1 2.1003 1.5767 -2.1492 36 1 3.9669 4.5381 1.1887 37 1 2.4699 3.7489 0.6367 38 1 1.3521 5.9919 3.3355 39 1 5.8585 1.5603 -1.1719 40 1 5.7999 3.3358 -1.2829 41 1 8.0984 2.4935 -1.6805 42 1 9.3248 1.3971 0.1744 43 1 7.9165 0.4284 -0.3209 44 1 8.0623 0.5870 2.1492 45 1 9.2227 2.7762 2.2558 46 1 7.7410 2.7896 3.2426 47 1 7.9237 4.8551 1.8829 48 1 7.7768 4.6960 -0.5872 49 1 9.2435 3.8897 0.0193 50 1 5.6980 4.7145 0.7979 51 1 5.6832 3.9215 2.3916 52 1 5.7650 1.4296 2.5473 53 1 5.8381 0.4470 1.0648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185096621.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:39 Heat of formation + Delta-G solvation = -86.604050 kcal Electronic energy + Delta-G solvation = -30420.441438 eV Core-core repulsion = 26868.287901 eV Total energy + Delta-G solvation = -3552.153537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.67191 -40.42793 -36.83930 -36.32134 -34.60415 -33.50286 -33.49499 -32.19369 -30.33149 -29.02155 -26.87005 -26.78485 -26.16259 -24.70984 -23.43971 -22.33122 -22.16952 -21.22297 -19.46983 -18.58282 -18.49482 -17.63760 -17.13593 -16.31586 -16.10678 -15.78064 -15.41601 -15.37153 -15.33697 -15.01223 -14.40212 -14.33173 -14.21463 -14.12116 -14.05066 -13.83975 -13.51898 -13.35773 -13.30189 -13.16455 -12.99263 -12.89135 -12.60315 -12.56482 -12.42196 -12.16148 -12.05429 -11.81450 -11.76288 -11.65432 -11.63923 -11.60846 -11.54564 -11.46791 -11.13498 -10.65116 -10.61810 -10.53943 -10.00771 -9.27609 -8.18745 -6.31714 1.36135 1.38926 1.47635 1.86395 2.31899 2.45109 3.10017 3.54656 3.63346 3.76133 3.86994 3.95771 4.08509 4.16528 4.22100 4.32564 4.33577 4.34816 4.35751 4.44894 4.49282 4.51391 4.57857 4.64587 4.65844 4.75328 4.82311 4.84662 4.88273 4.89825 4.99949 5.02045 5.06053 5.09255 5.13460 5.15995 5.17591 5.17925 5.21129 5.23229 5.25972 5.33590 5.36554 5.42349 5.46939 5.49129 5.55975 5.63028 5.67533 5.71200 6.03698 6.12807 6.63898 6.90432 7.35804 7.51805 8.85840 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.006460 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.767948 B = 4333.618668 C = 5953.243605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.115 4.115 4 H 0.084 0.916 5 C -0.127 4.127 6 C 0.517 3.483 7 O -0.586 6.586 8 N -0.595 5.595 9 C 0.249 3.751 10 C -0.533 4.533 11 H 0.041 0.959 12 C 0.027 3.973 13 N -0.916 5.916 14 Si 0.945 3.055 15 H -0.276 1.276 16 H -0.278 1.278 17 H -0.276 1.276 18 C 0.185 3.815 19 C -0.113 4.113 20 C -0.078 4.078 21 C -0.100 4.100 22 C -0.081 4.081 23 C -0.104 4.104 24 C -0.082 4.082 25 C -0.101 4.101 26 C -0.103 4.103 27 C -0.115 4.115 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.026 0.974 38 H 0.267 0.733 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.081 0.919 48 H 0.060 0.940 49 H 0.089 0.911 50 H 0.052 0.948 51 H 0.049 0.951 52 H 0.030 0.970 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.937 -4.149 -6.280 11.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.103 0.897 5 C -0.184 4.184 6 C 0.307 3.693 7 O -0.469 6.469 8 N -0.324 5.324 9 C 0.128 3.872 10 C -0.572 4.572 11 H 0.059 0.941 12 C -0.173 4.173 13 N -0.555 5.555 14 Si 0.771 3.229 15 H -0.202 1.202 16 H -0.203 1.203 17 H -0.201 1.201 18 C 0.101 3.899 19 C -0.152 4.152 20 C -0.097 4.097 21 C -0.137 4.137 22 C -0.100 4.100 23 C -0.141 4.141 24 C -0.101 4.101 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.154 4.154 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.099 0.901 48 H 0.079 0.921 49 H 0.108 0.892 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.049 0.951 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.155 -4.435 -6.419 12.028 hybrid contribution -0.975 0.130 1.390 1.703 sum 8.180 -4.304 -5.029 10.523 Atomic orbital electron populations 1.21783 0.93688 1.02462 1.02281 1.21248 0.96972 0.93551 1.01513 1.21370 0.91587 0.99429 1.01219 0.89750 1.21646 1.02894 0.99433 0.94467 1.20859 0.90864 0.81485 0.76124 1.90480 1.68279 1.34978 1.53128 1.48434 1.06572 1.20100 1.57304 1.19142 0.90488 0.84993 0.92569 1.21542 1.33652 1.03869 0.98087 0.94088 1.25511 0.95570 0.94730 1.01538 1.69991 1.37817 1.09449 1.38257 0.85748 0.77936 0.78203 0.80986 1.20155 1.20293 1.20060 1.20220 0.78758 0.95511 0.95397 1.21815 0.97040 1.01085 0.95225 1.21052 0.92872 0.95864 0.99925 1.21495 1.00860 0.97416 0.93934 1.21054 0.93017 0.98400 0.97485 1.21545 1.01303 0.93362 0.97882 1.21101 0.92691 0.99099 0.97179 1.21549 1.01361 0.96579 0.94381 1.21702 0.96896 0.95404 1.00124 1.21825 0.96790 0.98673 0.98066 0.93393 0.91176 0.91157 0.91513 0.94024 0.89621 0.93525 0.92140 0.95240 0.95638 0.92401 0.92480 0.93344 0.89612 0.89301 0.93002 0.90651 0.89217 0.93278 0.90060 0.92090 0.89236 0.92969 0.93213 0.95091 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.68 71.98 0.70 -3.20 16 2 C -0.09 -3.19 4.83 30.59 0.15 -3.04 16 3 C -0.11 -4.41 1.88 -11.54 -0.02 -4.43 16 4 H 0.08 3.70 6.25 -2.39 -0.01 3.68 16 5 C -0.13 -4.13 8.77 71.98 0.63 -3.50 16 6 C 0.52 22.38 6.14 87.66 0.54 22.92 16 7 O -0.59 -26.56 12.47 -3.03 -0.04 -26.60 16 8 N -0.60 -26.10 2.42 -779.09 -1.88 -27.98 16 9 C 0.25 12.15 4.15 85.63 0.36 12.51 16 10 C -0.53 -28.31 8.34 25.60 0.21 -28.09 16 11 H 0.04 2.29 7.81 -2.91 -0.02 2.26 16 12 C 0.03 1.43 5.46 84.65 0.46 1.89 16 13 N -0.92 -50.50 13.29 21.45 0.28 -50.22 16 14 Si 0.95 42.73 29.54 68.60 2.03 44.75 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 C 0.19 7.10 0.78 3.60 0.00 7.11 16 19 C -0.11 -3.85 4.40 30.59 0.13 -3.72 16 20 C -0.08 -2.00 3.19 -10.80 -0.03 -2.04 16 21 C -0.10 -2.44 5.19 30.59 0.16 -2.28 16 22 C -0.08 -2.28 3.19 -10.81 -0.03 -2.32 16 23 C -0.10 -2.66 5.19 30.60 0.16 -2.50 16 24 C -0.08 -2.25 3.19 -10.79 -0.03 -2.28 16 25 C -0.10 -2.33 5.19 30.60 0.16 -2.17 16 26 C -0.10 -3.82 3.19 30.59 0.10 -3.72 16 27 C -0.12 -4.36 4.39 30.58 0.13 -4.23 16 28 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.07 1.66 6.59 -2.39 -0.02 1.65 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 2.18 8.05 -2.38 -0.02 2.17 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 2.36 6.59 -2.39 -0.02 2.34 16 34 H 0.05 1.62 7.23 -2.39 -0.02 1.60 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.03 1.52 5.58 -2.39 -0.01 1.51 16 37 H 0.03 1.30 5.59 -2.38 -0.01 1.29 16 38 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 39 H 0.06 2.18 6.36 -2.39 -0.02 2.16 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.05 2.02 6.91 -2.39 -0.02 2.00 16 51 H 0.05 2.15 7.37 -2.39 -0.02 2.14 16 52 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 53 H 0.06 2.56 5.99 -2.38 -0.01 2.55 16 Total: -1.00 -60.27 376.98 5.02 -55.25 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.86 Total: 27.89 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 3.77 Total: -23.09 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -1.60 Total: -78.20 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.04 Total: -26.60 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -60.27 5.02 -55.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185096621.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.356 kcal (2) G-P(sol) polarization free energy of solvation -60.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds