Wall clock time and date at job start Tue Mar 31 2020 12:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47138 * 2 1 4 4 C 1.52994 * 109.47530 * 120.00239 * 2 1 3 5 5 C 1.53005 * 109.47210 * 182.71793 * 4 2 1 6 6 N 1.46901 * 109.46930 * 173.39954 * 5 4 2 7 7 C 1.46901 * 110.99807 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47179 * 35.00249 * 7 6 5 9 9 C 1.52998 * 109.47131 * 275.00260 * 7 6 5 10 10 C 1.50697 * 109.47014 * 155.00118 * 7 6 5 11 11 C 1.38302 * 119.93264 * 39.72832 * 10 7 6 12 12 C 1.38103 * 120.07066 * 179.72167 * 11 10 7 13 13 C 1.38875 * 119.92474 * 0.54858 * 12 11 10 14 14 O 1.35761 * 120.06281 * 179.74218 * 13 12 11 15 15 C 1.34831 * 116.99578 * 173.42974 * 14 13 12 16 16 H 1.08000 * 120.00294 * 5.14735 * 15 14 13 17 17 C 1.38650 * 119.99769 * 185.13916 * 15 14 13 18 18 N 1.31558 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00173 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46850 * 59.99735 * 19 17 15 21 21 H 1.48495 * 109.47412 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46845 * 300.00221 * 19 17 15 23 23 C 1.38870 * 119.86737 * 359.72639 * 13 12 11 24 24 C 1.38101 * 119.93259 * 359.97438 * 23 13 12 25 25 C 1.53009 * 109.47031 * 62.72421 * 4 2 1 26 26 C 1.52998 * 109.47171 * 65.55109 * 25 4 2 27 27 C 1.53001 * 109.46956 * 185.55419 * 25 4 2 28 28 H 1.08998 * 109.46601 * 303.05917 * 1 2 3 29 29 H 1.08997 * 109.47231 * 63.05454 * 1 2 3 30 30 H 1.09004 * 109.47220 * 183.06270 * 1 2 3 31 31 H 1.09003 * 109.46716 * 240.00404 * 2 1 3 32 32 H 1.09006 * 109.47102 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47206 * 300.00409 * 3 2 1 34 34 H 1.08994 * 109.46808 * 60.00339 * 3 2 1 35 35 H 1.09001 * 109.47176 * 302.72217 * 4 2 1 36 36 H 1.08998 * 109.47611 * 293.40241 * 5 4 2 37 37 H 1.09004 * 109.46558 * 53.40565 * 5 4 2 38 38 H 1.00897 * 111.00110 * 303.95977 * 6 5 4 39 39 H 1.09003 * 109.47080 * 300.00049 * 9 7 6 40 40 H 1.08994 * 109.47500 * 59.99921 * 9 7 6 41 41 H 1.09004 * 109.47501 * 180.02562 * 9 7 6 42 42 H 1.08005 * 119.96574 * 359.97438 * 11 10 7 43 43 H 1.07997 * 120.03533 * 180.27117 * 12 11 10 44 44 H 0.97000 * 119.99762 * 179.97438 * 18 17 15 45 45 H 1.08004 * 120.03415 * 179.97438 * 23 13 12 46 46 H 1.08001 * 119.96960 * 180.02562 * 24 23 13 47 47 H 1.09005 * 109.46768 * 305.54887 * 25 4 2 48 48 H 1.08995 * 109.47104 * 66.49947 * 26 25 4 49 49 H 1.09001 * 109.46894 * 186.50275 * 26 25 4 50 50 H 1.09004 * 109.46873 * 306.49782 * 26 25 4 51 51 H 1.08995 * 109.46760 * 170.60012 * 27 25 4 52 52 H 1.09008 * 109.46517 * 290.59184 * 27 25 4 53 53 H 1.08999 * 109.47438 * 50.59511 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5686 -0.6622 1.2837 6 7 4.0512 -1.2136 2.5570 7 6 5.5180 -1.1726 2.6261 8 1 5.8807 -0.2783 2.1194 9 6 6.0956 -2.4146 1.9447 10 6 5.9522 -1.1434 4.0689 11 6 5.2897 -1.9168 5.0047 12 6 5.6889 -1.8966 6.3266 13 6 6.7495 -1.0899 6.7178 14 8 7.1408 -1.0640 8.0175 15 6 8.2588 -0.3677 8.3063 16 1 8.7524 0.2052 7.5353 17 6 8.7745 -0.3871 9.5932 18 7 8.1733 -1.0852 10.5323 19 14 10.3229 0.5781 9.9935 20 1 10.0919 2.0196 9.7212 21 1 10.6642 0.3942 11.4270 22 1 11.4432 0.0885 9.1506 23 6 7.4090 -0.3102 5.7768 24 6 7.0091 -0.3394 4.4553 25 6 1.5868 -2.1823 1.2153 26 6 2.2625 -2.8988 0.0444 27 6 1.9768 -2.8677 2.5264 28 1 -0.3632 0.5606 0.8613 29 1 -0.3633 0.4657 -0.9161 30 1 -0.3634 -1.0262 0.0549 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6375 -0.2364 2.1385 36 1 3.9736 -1.2469 0.4578 37 1 3.8943 0.3737 1.1897 38 1 3.6388 -0.7293 3.3402 39 1 5.7329 -3.3089 2.4514 40 1 5.7816 -2.4358 0.9011 41 1 7.1840 -2.3845 1.9963 42 1 4.4618 -2.5403 4.7007 43 1 5.1739 -2.5041 7.0561 44 1 8.5344 -1.0990 11.4325 45 1 8.2339 0.3185 6.0782 46 1 7.5219 0.2664 3.7229 47 1 0.5047 -2.2242 1.0913 48 1 3.3357 -2.9582 0.2253 49 1 1.8537 -3.9049 -0.0505 50 1 2.0792 -2.3439 -0.8757 51 1 1.5121 -3.8525 2.5737 52 1 3.0607 -2.9749 2.5718 53 1 1.6358 -2.2641 3.3674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229524617.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:23 Heat of formation + Delta-G solvation = -26.786337 kcal Electronic energy + Delta-G solvation = -27475.214883 eV Core-core repulsion = 23925.655236 eV Total energy + Delta-G solvation = -3549.559647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.56328 -38.91458 -37.17396 -35.07962 -33.66987 -32.28381 -30.90859 -30.14815 -27.96045 -27.70029 -27.19489 -26.89421 -25.38922 -23.50932 -22.20164 -21.56725 -21.01625 -19.96750 -18.83349 -17.92113 -16.97419 -16.21842 -15.77085 -15.36765 -14.91300 -14.53551 -14.38510 -14.09900 -13.83148 -13.67672 -13.58966 -13.41113 -13.01291 -12.84853 -12.74278 -12.56666 -12.48172 -12.39036 -12.24006 -12.03174 -11.81086 -11.71823 -11.66307 -11.43756 -11.28508 -11.23716 -11.10637 -10.95200 -10.67975 -10.65067 -10.43601 -10.39331 -10.31852 -10.19093 -10.08548 -9.33426 -8.81890 -8.16217 -8.08771 -7.16536 -6.44628 -4.03654 2.23747 2.31981 3.12696 3.13813 3.16654 3.96768 4.17944 4.54958 4.57860 4.65969 4.79422 4.88181 5.07946 5.14979 5.16390 5.25955 5.33165 5.36445 5.38172 5.42861 5.50553 5.52755 5.54441 5.62613 5.70883 5.71274 5.72821 5.78264 5.80070 5.88000 5.91532 5.92958 6.00091 6.03776 6.08021 6.12808 6.16056 6.23714 6.25531 6.31060 6.40946 6.46872 6.49545 6.73940 6.85766 6.89063 7.05521 7.10015 7.28051 7.44327 7.45726 7.58077 7.84682 8.00322 9.00932 9.71546 10.73349 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.002385 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.262248 B =11739.532142 C =11926.415875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.076 4.076 5 C 0.056 3.944 6 N -0.674 5.674 7 C 0.140 3.860 8 H 0.038 0.962 9 C -0.131 4.131 10 C -0.190 4.190 11 C -0.055 4.055 12 C -0.195 4.195 13 C 0.155 3.845 14 O -0.178 6.178 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.234 4.234 24 C -0.066 4.066 25 C -0.081 4.081 26 C -0.148 4.148 27 C -0.154 4.154 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.344 0.656 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.103 0.897 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.046 0.954 50 H 0.048 0.952 51 H 0.032 0.968 52 H 0.101 0.899 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 0.792 -20.937 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.095 4.095 5 C -0.073 4.073 6 N -0.305 5.305 7 C 0.031 3.969 8 H 0.056 0.944 9 C -0.189 4.189 10 C -0.192 4.192 11 C -0.074 4.074 12 C -0.214 4.214 13 C 0.101 3.899 14 O -0.082 6.082 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.254 4.254 24 C -0.085 4.085 25 C -0.099 4.099 26 C -0.205 4.205 27 C -0.211 4.211 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.163 0.837 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.121 0.879 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.051 0.949 52 H 0.119 0.881 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.280 -0.004 -20.682 23.558 hybrid contribution 0.967 1.554 0.353 1.864 sum -10.313 1.550 -20.329 22.848 Atomic orbital electron populations 1.21884 0.95386 1.01873 1.01379 1.21156 0.95657 0.95865 0.98520 1.21939 1.01268 0.96160 1.01496 1.21266 0.94869 0.95820 0.97515 1.22219 0.94484 0.97245 0.93320 1.60885 1.06253 1.59258 1.04141 1.20155 0.87149 0.96805 0.92771 0.94400 1.21766 0.99835 0.98229 0.99055 1.19273 1.01372 1.04428 0.94090 1.20499 0.98158 0.97178 0.91542 1.20261 1.00709 1.04150 0.96300 1.19423 0.92912 0.92468 0.85107 1.83982 1.40708 1.64354 1.19137 1.21262 1.01804 1.27393 0.96367 0.89204 1.25280 0.99141 0.97434 0.94652 1.70029 1.39083 1.38227 1.02460 0.85795 0.80258 0.79451 0.78006 1.19546 1.20268 1.19514 1.21108 1.05094 1.05843 0.93337 1.20581 0.95705 0.97179 0.95033 1.21011 0.98824 0.93891 0.96175 1.21941 1.01433 0.99505 0.97654 1.22135 1.05425 0.98097 0.95455 0.92834 0.93114 0.92285 0.91036 0.92346 0.93069 0.92786 0.91395 0.90808 0.95246 0.83722 0.92027 0.93644 0.92873 0.86248 0.86657 0.91981 0.85743 0.87918 0.92258 0.91922 0.93493 0.93294 0.94894 0.88061 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.99 37.16 0.33 -0.73 16 2 C -0.09 -0.71 2.34 -90.62 -0.21 -0.92 16 3 C -0.15 -1.16 8.78 37.16 0.33 -0.83 16 4 C -0.08 -0.65 1.48 -90.62 -0.13 -0.79 16 5 C 0.06 0.53 4.31 -3.82 -0.02 0.52 16 6 N -0.67 -7.41 2.33 -107.95 -0.25 -7.66 16 7 C 0.14 1.79 2.82 -68.87 -0.19 1.60 16 8 H 0.04 0.49 7.66 -51.93 -0.40 0.09 16 9 C -0.13 -1.58 9.39 37.16 0.35 -1.23 16 10 C -0.19 -3.08 4.72 -104.58 -0.49 -3.58 16 11 C -0.06 -0.95 8.99 -39.61 -0.36 -1.31 16 12 C -0.19 -4.07 9.99 -39.40 -0.39 -4.46 16 13 C 0.15 3.72 6.64 -39.11 -0.26 3.46 16 14 O -0.18 -5.10 9.76 0.01 0.00 -5.10 16 15 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 16 H 0.09 2.33 5.21 -52.49 -0.27 2.05 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 19 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.23 -5.05 9.16 -39.40 -0.36 -5.41 16 24 C -0.07 -1.19 9.66 -39.61 -0.38 -1.57 16 25 C -0.08 -0.71 2.54 -90.62 -0.23 -0.94 16 26 C -0.15 -1.26 8.37 37.16 0.31 -0.95 16 27 C -0.15 -1.57 8.18 37.16 0.30 -1.27 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 6.24 -51.93 -0.32 0.10 16 31 H 0.07 0.55 6.34 -51.93 -0.33 0.22 16 32 H 0.06 0.46 6.24 -51.93 -0.32 0.14 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 36 H 0.07 0.71 5.40 -51.93 -0.28 0.43 16 37 H 0.03 0.29 5.94 -51.93 -0.31 -0.02 16 38 H 0.34 4.10 7.98 -39.29 -0.31 3.79 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.12 1.80 7.70 -52.48 -0.40 1.40 16 43 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.12 2.71 5.65 -52.48 -0.30 2.41 16 46 H 0.10 1.60 8.03 -52.49 -0.42 1.18 16 47 H 0.06 0.52 6.18 -51.93 -0.32 0.20 16 48 H 0.06 0.58 6.55 -51.93 -0.34 0.24 16 49 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.05 0.38 6.26 -51.93 -0.32 0.05 16 51 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.10 1.14 5.81 -51.92 -0.30 0.84 16 53 H 0.04 0.48 8.10 -51.93 -0.42 0.06 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -28.58 400.32 -8.82 -37.41 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -9.13 Total: 6.55 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: -1.21 Total: -28.13 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.51 Total: -32.28 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.58 -8.82 -37.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229524617.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.619 kcal (2) G-P(sol) polarization free energy of solvation -28.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds