Wall clock time and date at job start Tue Mar 31 2020 12:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47138 * 2 1 4 4 C 1.52994 * 109.47530 * 120.00239 * 2 1 3 5 5 C 1.53005 * 109.47210 * 182.71793 * 4 2 1 6 6 N 1.46901 * 109.46930 * 173.39954 * 5 4 2 7 7 C 1.46901 * 110.99807 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47179 * 35.00249 * 7 6 5 9 9 C 1.52998 * 109.47131 * 275.00260 * 7 6 5 10 10 C 1.50697 * 109.47014 * 155.00118 * 7 6 5 11 11 C 1.38302 * 119.93264 * 39.72832 * 10 7 6 12 12 C 1.38103 * 120.07066 * 179.72167 * 11 10 7 13 13 C 1.38875 * 119.92474 * 0.54858 * 12 11 10 14 14 O 1.35761 * 120.06281 * 179.74218 * 13 12 11 15 15 C 1.34831 * 116.99578 * 173.42974 * 14 13 12 16 16 H 1.08000 * 120.00294 * 5.14735 * 15 14 13 17 17 C 1.38650 * 119.99769 * 185.13916 * 15 14 13 18 18 N 1.31558 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00173 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46850 * 59.99735 * 19 17 15 21 21 H 1.48495 * 109.47412 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46845 * 300.00221 * 19 17 15 23 23 C 1.38870 * 119.86737 * 359.72639 * 13 12 11 24 24 C 1.38101 * 119.93259 * 359.97438 * 23 13 12 25 25 C 1.53009 * 109.47031 * 62.72421 * 4 2 1 26 26 C 1.52998 * 109.47171 * 65.55109 * 25 4 2 27 27 C 1.53001 * 109.46956 * 185.55419 * 25 4 2 28 28 H 1.08998 * 109.46601 * 303.05917 * 1 2 3 29 29 H 1.08997 * 109.47231 * 63.05454 * 1 2 3 30 30 H 1.09004 * 109.47220 * 183.06270 * 1 2 3 31 31 H 1.09003 * 109.46716 * 240.00404 * 2 1 3 32 32 H 1.09006 * 109.47102 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47206 * 300.00409 * 3 2 1 34 34 H 1.08994 * 109.46808 * 60.00339 * 3 2 1 35 35 H 1.09001 * 109.47176 * 302.72217 * 4 2 1 36 36 H 1.08998 * 109.47611 * 293.40241 * 5 4 2 37 37 H 1.09004 * 109.46558 * 53.40565 * 5 4 2 38 38 H 1.00897 * 111.00110 * 303.95977 * 6 5 4 39 39 H 1.09003 * 109.47080 * 300.00049 * 9 7 6 40 40 H 1.08994 * 109.47500 * 59.99921 * 9 7 6 41 41 H 1.09004 * 109.47501 * 180.02562 * 9 7 6 42 42 H 1.08005 * 119.96574 * 359.97438 * 11 10 7 43 43 H 1.07997 * 120.03533 * 180.27117 * 12 11 10 44 44 H 0.97000 * 119.99762 * 179.97438 * 18 17 15 45 45 H 1.08004 * 120.03415 * 179.97438 * 23 13 12 46 46 H 1.08001 * 119.96960 * 180.02562 * 24 23 13 47 47 H 1.09005 * 109.46768 * 305.54887 * 25 4 2 48 48 H 1.08995 * 109.47104 * 66.49947 * 26 25 4 49 49 H 1.09001 * 109.46894 * 186.50275 * 26 25 4 50 50 H 1.09004 * 109.46873 * 306.49782 * 26 25 4 51 51 H 1.08995 * 109.46760 * 170.60012 * 27 25 4 52 52 H 1.09008 * 109.46517 * 290.59184 * 27 25 4 53 53 H 1.08999 * 109.47438 * 50.59511 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5686 -0.6622 1.2837 6 7 4.0512 -1.2136 2.5570 7 6 5.5180 -1.1726 2.6261 8 1 5.8807 -0.2783 2.1194 9 6 6.0956 -2.4146 1.9447 10 6 5.9522 -1.1434 4.0689 11 6 5.2897 -1.9168 5.0047 12 6 5.6889 -1.8966 6.3266 13 6 6.7495 -1.0899 6.7178 14 8 7.1408 -1.0640 8.0175 15 6 8.2588 -0.3677 8.3063 16 1 8.7524 0.2052 7.5353 17 6 8.7745 -0.3871 9.5932 18 7 8.1733 -1.0852 10.5323 19 14 10.3229 0.5781 9.9935 20 1 10.0919 2.0196 9.7212 21 1 10.6642 0.3942 11.4270 22 1 11.4432 0.0885 9.1506 23 6 7.4090 -0.3102 5.7768 24 6 7.0091 -0.3394 4.4553 25 6 1.5868 -2.1823 1.2153 26 6 2.2625 -2.8988 0.0444 27 6 1.9768 -2.8677 2.5264 28 1 -0.3632 0.5606 0.8613 29 1 -0.3633 0.4657 -0.9161 30 1 -0.3634 -1.0262 0.0549 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6375 -0.2364 2.1385 36 1 3.9736 -1.2469 0.4578 37 1 3.8943 0.3737 1.1897 38 1 3.6388 -0.7293 3.3402 39 1 5.7329 -3.3089 2.4514 40 1 5.7816 -2.4358 0.9011 41 1 7.1840 -2.3845 1.9963 42 1 4.4618 -2.5403 4.7007 43 1 5.1739 -2.5041 7.0561 44 1 8.5344 -1.0990 11.4325 45 1 8.2339 0.3185 6.0782 46 1 7.5219 0.2664 3.7229 47 1 0.5047 -2.2242 1.0913 48 1 3.3357 -2.9582 0.2253 49 1 1.8537 -3.9049 -0.0505 50 1 2.0792 -2.3439 -0.8757 51 1 1.5121 -3.8525 2.5737 52 1 3.0607 -2.9749 2.5718 53 1 1.6358 -2.2641 3.3674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229524617.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:22 Heat of formation + Delta-G solvation = -39.948545 kcal Electronic energy + Delta-G solvation = -27475.785639 eV Core-core repulsion = 23925.655236 eV Total energy + Delta-G solvation = -3550.130403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.91107 -40.05349 -38.67020 -36.30055 -34.41744 -34.20706 -32.05656 -31.69923 -29.39136 -28.42191 -27.90410 -27.59622 -27.34806 -24.50363 -23.74347 -22.87865 -21.68642 -21.29572 -19.75068 -19.60863 -18.77116 -16.98662 -16.94285 -16.58176 -16.25828 -15.81526 -15.59685 -15.50924 -15.34417 -14.91499 -14.58294 -14.51592 -14.33681 -13.96796 -13.74328 -13.60604 -13.53758 -13.42555 -13.28389 -13.03444 -12.95073 -12.90879 -12.64540 -12.56980 -12.41063 -12.27726 -12.17810 -12.08199 -12.02886 -11.89854 -11.67705 -11.41061 -11.17361 -11.08928 -10.91748 -10.86665 -10.75823 -9.75089 -8.99784 -8.88418 -8.46626 -6.14839 0.62388 0.71314 1.34263 1.45030 1.50617 2.17839 2.82776 3.15689 3.31289 3.54947 3.87630 3.91363 4.00179 4.08052 4.14752 4.24792 4.25024 4.45272 4.50609 4.58958 4.61453 4.64061 4.67533 4.77429 4.78005 4.81524 4.84452 4.85040 4.98110 5.01125 5.05144 5.08439 5.08988 5.12994 5.16445 5.18212 5.28106 5.29341 5.32474 5.36001 5.43467 5.46132 5.50760 5.55740 5.60015 5.61459 5.73111 5.74751 5.79638 6.01311 6.03797 6.24320 6.32760 6.55894 6.98019 7.79896 8.76482 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.002385 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.262248 B =11739.532142 C =11926.415875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.150 4.150 4 C -0.070 4.070 5 C 0.060 3.940 6 N -0.671 5.671 7 C 0.145 3.855 8 H 0.050 0.950 9 C -0.128 4.128 10 C -0.160 4.160 11 C -0.044 4.044 12 C -0.206 4.206 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.258 1.258 23 C -0.243 4.243 24 C -0.065 4.065 25 C -0.078 4.078 26 C -0.145 4.145 27 C -0.151 4.151 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.340 0.660 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.147 0.853 43 H 0.109 0.891 44 H 0.272 0.728 45 H 0.116 0.884 46 H 0.136 0.864 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.046 0.954 50 H 0.058 0.942 51 H 0.029 0.971 52 H 0.093 0.907 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 1.538 -24.598 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.088 4.088 5 C -0.069 4.069 6 N -0.302 5.302 7 C 0.036 3.964 8 H 0.068 0.932 9 C -0.186 4.186 10 C -0.161 4.161 11 C -0.062 4.062 12 C -0.225 4.225 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.837 3.163 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.182 1.182 23 C -0.262 4.262 24 C -0.084 4.084 25 C -0.096 4.096 26 C -0.202 4.202 27 C -0.208 4.208 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.158 0.842 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.165 0.835 43 H 0.127 0.873 44 H 0.081 0.919 45 H 0.134 0.866 46 H 0.154 0.846 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.077 0.923 51 H 0.049 0.951 52 H 0.112 0.888 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.487 0.741 -24.412 26.989 hybrid contribution 0.798 1.257 1.146 1.879 sum -10.688 1.997 -23.266 25.681 Atomic orbital electron populations 1.21872 0.95055 1.01916 1.01577 1.21124 0.95895 0.95755 0.98021 1.21927 1.01126 0.96127 1.01581 1.21193 0.94247 0.95694 0.97713 1.22241 0.94940 0.97286 0.92399 1.60916 1.04940 1.59499 1.04836 1.20159 0.88361 0.97964 0.89912 0.93244 1.21730 0.99608 0.97119 1.00125 1.19766 0.99106 1.01247 0.95996 1.20769 0.98432 0.97008 0.89966 1.20492 1.00177 1.03887 0.97940 1.19954 0.94639 0.94524 0.84620 1.83945 1.41945 1.66542 1.21643 1.21760 1.02252 1.27746 0.97175 0.88234 1.26586 1.02839 0.98561 0.94130 1.70181 1.41635 1.41125 1.03039 0.84662 0.75519 0.78136 0.77988 1.18164 1.19621 1.18196 1.21202 1.04893 1.05503 0.94581 1.20933 0.96013 0.97433 0.93999 1.20981 0.99056 0.93910 0.95674 1.21900 1.00919 0.99606 0.97734 1.22094 1.04730 0.98027 0.95998 0.93308 0.92371 0.92244 0.90508 0.92492 0.92346 0.93407 0.92373 0.90187 0.95083 0.84173 0.92742 0.91586 0.93100 0.83544 0.87279 0.91868 0.86615 0.84609 0.92039 0.92419 0.93511 0.92334 0.95140 0.88832 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.99 71.98 0.65 -1.13 16 2 C -0.09 -1.12 2.34 -10.80 -0.03 -1.14 16 3 C -0.15 -1.92 8.78 71.98 0.63 -1.29 16 4 C -0.07 -1.02 1.48 -10.79 -0.02 -1.03 16 5 C 0.06 0.94 4.31 86.30 0.37 1.31 16 6 N -0.67 -12.65 2.33 -495.44 -1.15 -13.80 16 7 C 0.15 3.16 2.82 44.17 0.12 3.29 16 8 H 0.05 1.03 7.66 -2.39 -0.02 1.01 16 9 C -0.13 -2.60 9.39 71.98 0.68 -1.92 16 10 C -0.16 -4.77 4.72 -19.83 -0.09 -4.86 16 11 C -0.04 -1.44 8.99 22.25 0.20 -1.24 16 12 C -0.21 -8.79 9.99 22.39 0.22 -8.57 16 13 C 0.11 5.65 6.64 22.57 0.15 5.80 16 14 O -0.23 -14.25 9.76 -22.87 -0.22 -14.48 16 15 C -0.41 -24.31 9.49 67.92 0.64 -23.67 16 16 H 0.10 5.37 5.21 -2.91 -0.02 5.36 16 17 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 18 N -0.92 -57.17 13.67 21.61 0.30 -56.87 16 19 Si 1.02 43.18 29.55 68.60 2.03 45.20 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 23 C -0.24 -10.54 9.16 22.39 0.21 -10.34 16 24 C -0.07 -2.21 9.66 22.25 0.21 -1.99 16 25 C -0.08 -1.19 2.54 -10.79 -0.03 -1.22 16 26 C -0.14 -2.03 8.37 71.98 0.60 -1.42 16 27 C -0.15 -2.79 8.18 71.98 0.59 -2.20 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.71 6.24 -2.38 -0.01 0.70 16 31 H 0.08 0.92 6.34 -2.39 -0.02 0.90 16 32 H 0.06 0.74 6.24 -2.38 -0.01 0.73 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.99 8.11 -2.39 -0.02 0.97 16 36 H 0.08 1.21 5.40 -2.39 -0.01 1.19 16 37 H 0.03 0.50 5.94 -2.38 -0.01 0.49 16 38 H 0.34 7.14 7.98 -89.70 -0.72 6.43 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.11 7.45 -2.39 -0.02 1.09 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.15 4.07 7.70 -2.91 -0.02 4.05 16 43 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 44 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.12 5.15 5.65 -2.91 -0.02 5.14 16 46 H 0.14 3.72 8.03 -2.91 -0.02 3.70 16 47 H 0.06 0.94 6.18 -2.38 -0.01 0.92 16 48 H 0.06 0.87 6.55 -2.39 -0.02 0.86 16 49 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.06 0.71 6.26 -2.38 -0.01 0.70 16 51 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.09 1.87 5.81 -2.38 -0.01 1.86 16 53 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 Total: -1.00 -66.51 400.32 6.70 -59.80 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.17 Total: 32.66 kcal Atomic # 6 Polarization: -58.11 SS G_CDS: 5.58 Total: -52.52 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -0.86 Total: -70.67 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.22 Total: -14.48 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -66.51 6.70 -59.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229524617.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.856 kcal (2) G-P(sol) polarization free energy of solvation -66.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds