Wall clock time and date at job start Tue Mar 31 2020 13:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31841 * 119.66797 * 2 1 4 4 C 1.31908 * 121.79018 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 119.55007 * 180.02562 * 4 3 2 6 6 C 1.38391 * 120.90458 * 359.72434 * 4 3 2 7 7 C 1.38469 * 119.22744 * 0.58072 * 6 4 3 8 8 C 1.38860 * 119.66716 * 180.02562 * 2 1 3 9 9 N 1.39757 * 120.47449 * 0.02562 * 8 2 1 10 10 S 1.65605 * 119.99614 * 214.97571 * 9 8 2 11 11 O 1.42093 * 106.40487 * 178.53754 * 10 9 8 12 12 O 1.42106 * 106.40091 * 311.46127 * 10 9 8 13 13 C 1.76204 * 107.21909 * 64.99644 * 10 9 8 14 14 H 1.08002 * 119.99947 * 0.02562 * 13 10 9 15 15 C 1.37869 * 120.00215 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00092 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 120.00220 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47048 * 59.99580 * 17 15 13 19 19 H 1.48496 * 109.47251 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46697 * 299.99885 * 17 15 13 21 21 H 1.08998 * 109.46520 * 269.97064 * 1 2 3 22 22 H 1.08995 * 109.47040 * 29.97253 * 1 2 3 23 23 H 1.09005 * 109.47236 * 149.97486 * 1 2 3 24 24 H 1.07995 * 120.38875 * 180.29032 * 6 4 3 25 25 H 1.08002 * 120.81799 * 179.71117 * 7 6 4 26 26 H 0.97000 * 120.00695 * 34.97476 * 9 8 2 27 27 H 0.96999 * 120.00470 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1456 0.0000 4 6 3.4778 1.1944 0.0005 5 35 4.3488 2.8729 0.0012 6 6 4.2320 0.0342 0.0068 7 6 3.5874 -1.1913 0.0003 8 6 2.1943 -1.2066 -0.0005 9 7 1.4985 -2.4186 -0.0016 10 16 2.1052 -3.7223 0.8199 11 8 1.1634 -4.7736 0.6560 12 8 3.4702 -3.8355 0.4411 13 6 2.0969 -3.3093 2.5328 14 1 1.7339 -2.3441 2.8539 15 6 2.5538 -4.2183 3.4633 16 7 2.9954 -5.3938 3.0725 17 14 2.5444 -3.7808 5.2794 18 1 1.1533 -3.4930 5.7119 19 1 3.0812 -4.9202 6.0659 20 1 3.3907 -2.5813 5.5039 21 1 -0.3632 -0.0005 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5142 24 1 5.3108 0.0839 0.0118 25 1 4.1508 -2.1128 0.0003 26 1 0.6603 -2.4963 -0.4835 27 1 3.3173 -6.0332 3.7271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235810448.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:00 Heat of formation + Delta-G solvation = -80.954567 kcal Electronic energy + Delta-G solvation = -17168.445026 eV Core-core repulsion = 14097.837421 eV Total energy + Delta-G solvation = -3070.607606 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 319.962 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.55703 -37.69697 -36.81433 -36.34274 -35.24113 -34.24772 -32.49715 -30.75413 -28.34252 -28.15419 -24.26827 -23.26237 -21.21048 -19.69601 -19.24602 -18.36100 -17.33198 -17.10849 -16.92568 -16.03394 -15.79617 -15.72018 -14.93576 -14.47346 -14.06284 -13.69346 -13.47890 -13.38283 -13.14586 -13.05453 -12.93594 -12.72701 -12.57117 -12.35874 -12.32616 -11.57238 -11.45297 -11.28321 -11.06973 -10.76260 -10.58782 -9.35329 -8.81614 -7.56628 -0.30947 0.04670 0.13444 0.31539 1.32994 1.33717 1.47167 2.15334 2.46532 2.51876 2.60020 3.28800 3.44863 3.63544 3.82160 3.90179 4.25941 4.44902 4.46072 4.69624 4.78448 4.83996 5.08423 5.16378 5.22401 5.47658 5.80444 6.04342 6.59525 6.71893 8.13987 Molecular weight = 319.96amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.004777 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.096213 B = 5859.905649 C = 6435.588991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.107 3.893 3 N -0.452 5.452 4 C 0.086 3.914 5 Br 0.006 6.994 6 C -0.110 4.110 7 C -0.134 4.134 8 C 0.134 3.866 9 N -1.046 6.046 10 S 2.714 3.286 11 O -1.025 7.025 12 O -1.017 7.017 13 C -1.035 5.035 14 H 0.116 0.884 15 C 0.079 3.921 16 N -0.886 5.886 17 Si 0.984 3.016 18 H -0.251 1.251 19 H -0.261 1.261 20 H -0.254 1.254 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.172 0.828 25 H 0.170 0.830 26 H 0.430 0.570 27 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 15.203 -4.344 15.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.038 4.038 3 N -0.163 5.163 4 C -0.132 4.132 5 Br 0.090 6.910 6 C -0.132 4.132 7 C -0.164 4.164 8 C 0.033 3.967 9 N -0.794 5.794 10 S 2.816 3.184 11 O -1.015 7.015 12 O -1.007 7.007 13 C -1.169 5.169 14 H 0.134 0.866 15 C -0.135 4.135 16 N -0.517 5.517 17 Si 0.802 3.198 18 H -0.175 1.175 19 H -0.185 1.185 20 H -0.178 1.178 21 H 0.108 0.892 22 H 0.115 0.885 23 H 0.107 0.893 24 H 0.189 0.811 25 H 0.187 0.813 26 H 0.269 0.731 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.529 15.524 -4.693 16.226 hybrid contribution -0.063 -1.040 0.946 1.407 sum 0.467 14.484 -3.747 14.968 Atomic orbital electron populations 1.20800 0.85751 1.04806 1.04550 1.21598 0.98592 0.85573 0.98031 1.67246 1.08464 1.28702 1.11896 1.22896 0.91689 0.92983 1.05607 1.96705 1.74621 1.22131 1.97574 1.22061 1.02783 0.89740 0.98643 1.22729 0.93582 1.01612 0.98470 1.18487 0.91777 0.87004 0.99438 1.53490 1.36013 1.24286 1.65647 1.00411 0.72023 0.70308 0.75660 1.93355 1.64877 1.54571 1.88729 1.93238 1.36881 1.85224 1.85352 1.30680 1.57605 1.12044 1.16541 0.86618 1.25859 0.88253 0.92342 1.07074 1.69939 1.34576 1.07068 1.40102 0.85234 0.80526 0.79517 0.74474 1.17459 1.18495 1.17763 0.89163 0.88526 0.89275 0.81052 0.81311 0.73103 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.34 9.93 71.24 0.71 -1.64 15 2 C 0.11 3.30 6.80 42.71 0.29 3.59 15 3 N -0.45 -14.15 10.23 -178.36 -1.82 -15.97 15 4 C 0.09 2.56 7.16 84.72 0.61 3.16 15 5 Br 0.01 0.14 33.86 -20.37 -0.69 -0.55 15 6 C -0.11 -3.33 9.82 22.36 0.22 -3.11 15 7 C -0.13 -4.90 9.33 22.59 0.21 -4.68 15 8 C 0.13 4.75 6.34 38.29 0.24 4.99 15 9 N -1.05 -38.64 5.49 -51.10 -0.28 -38.92 15 10 S 2.71 134.99 4.87 -56.49 -0.28 134.72 15 11 O -1.03 -56.95 18.02 -128.00 -2.31 -59.26 15 12 O -1.02 -54.55 14.75 -128.00 -1.89 -56.43 15 13 C -1.03 -53.84 9.68 67.73 0.66 -53.19 15 14 H 0.12 5.54 7.81 -2.91 -0.02 5.52 15 15 C 0.08 4.18 5.46 84.65 0.46 4.64 15 16 N -0.89 -49.93 13.19 21.44 0.28 -49.65 15 17 Si 0.98 39.62 29.54 68.60 2.03 41.65 15 18 H -0.25 -9.55 7.11 99.48 0.71 -8.85 15 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 20 H -0.25 -9.78 7.11 99.48 0.71 -9.07 15 21 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.10 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.09 1.75 6.51 -2.38 -0.02 1.74 15 24 H 0.17 4.15 8.06 -2.91 -0.02 4.13 15 25 H 0.17 6.92 5.14 -2.91 -0.01 6.90 15 26 H 0.43 12.77 7.35 -96.74 -0.71 12.06 15 27 H 0.30 15.30 8.31 -92.71 -0.77 14.53 15 Total: -1.00 -67.93 275.26 -1.03 -68.97 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.52 Total: 21.68 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 3.40 Total: -46.24 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -1.82 Total: -104.53 kcal Atomic # 8 Polarization: -111.50 SS G_CDS: -4.19 Total: -115.69 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Atomic # 16 Polarization: 134.99 SS G_CDS: -0.28 Total: 134.72 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -0.69 Total: -0.55 kcal Total: -67.93 -1.03 -68.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235810448.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.987 kcal (2) G-P(sol) polarization free energy of solvation -67.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds