Wall clock time and date at job start Tue Mar 31 2020 12:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.53001 * 109.47279 * 65.00040 * 3 2 1 6 6 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 7 7 C 1.53009 * 109.47333 * 175.00082 * 6 3 2 8 8 H 1.08998 * 109.46964 * 54.99956 * 7 6 3 9 9 C 1.53000 * 109.47253 * 175.00450 * 7 6 3 10 10 N 1.46901 * 109.46999 * 295.00234 * 7 6 3 11 11 C 1.46895 * 110.99876 * 154.99752 * 10 7 6 12 12 C 1.50702 * 109.46997 * 179.97438 * 11 10 7 13 13 C 1.38292 * 119.97427 * 269.72824 * 12 11 10 14 14 C 1.38243 * 120.11282 * 179.72834 * 13 12 11 15 15 C 1.38174 * 120.05482 * 0.54343 * 14 13 12 16 16 C 1.38707 * 119.94141 * 359.73189 * 15 14 13 17 17 O 1.35904 * 120.05569 * 179.97438 * 16 15 14 18 18 C 1.42898 * 116.99621 * 0.02562 * 17 16 15 19 19 C 1.53000 * 109.47044 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47213 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00198 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00358 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99344 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00140 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46778 * 90.00633 * 24 22 20 26 26 H 1.48498 * 109.47033 * 209.99944 * 24 22 20 27 27 H 1.48491 * 109.47465 * 330.00419 * 24 22 20 28 28 C 1.38127 * 119.97065 * 90.00357 * 12 11 10 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09001 * 109.46924 * 300.00271 * 5 3 2 35 35 H 1.09000 * 109.47104 * 59.99686 * 5 3 2 36 36 H 1.08993 * 109.47832 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47310 * 295.00266 * 6 3 2 38 38 H 1.09002 * 109.47223 * 55.00225 * 6 3 2 39 39 H 1.08999 * 109.47073 * 59.99600 * 9 7 6 40 40 H 1.08998 * 109.46792 * 180.02562 * 9 7 6 41 41 H 1.09000 * 109.46788 * 299.99594 * 9 7 6 42 42 H 1.00905 * 111.00251 * 31.04549 * 10 7 6 43 43 H 1.08999 * 109.47309 * 299.99676 * 11 10 7 44 44 H 1.09001 * 109.47407 * 60.00371 * 11 10 7 45 45 H 1.07993 * 119.94097 * 359.97438 * 13 12 11 46 46 H 1.07995 * 119.97162 * 180.25343 * 14 13 12 47 47 H 1.07996 * 120.02821 * 179.75085 * 15 14 13 48 48 H 1.09002 * 109.47685 * 300.00005 * 18 17 16 49 49 H 1.09006 * 109.47167 * 60.00386 * 18 17 16 50 50 H 1.08998 * 109.47227 * 300.00117 * 19 18 17 51 51 H 1.09006 * 109.46762 * 60.00213 * 19 18 17 52 52 H 0.97005 * 119.99499 * 179.97438 * 23 22 20 53 53 H 1.07999 * 120.03176 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2511 8 1 3.6972 3.4715 0.5910 9 6 5.5946 2.8959 -0.2514 10 7 3.5705 3.4671 -1.5060 11 6 3.4972 4.9314 -1.4141 12 6 2.9881 5.4916 -2.7171 13 6 3.8797 5.8354 -3.7168 14 6 3.4154 6.3444 -4.9153 15 6 2.0594 6.5213 -5.1131 16 6 1.1635 6.1826 -4.1099 17 8 -0.1707 6.3562 -4.3017 18 6 -0.5806 6.8918 -5.5615 19 6 -2.1055 7.0137 -5.5920 20 6 -2.5378 7.5780 -6.9208 21 1 -1.7990 7.8254 -7.6686 22 6 -3.8767 7.7794 -7.1815 23 7 -4.7764 7.4795 -6.2703 24 14 -4.4125 8.4796 -8.8283 25 1 -4.6483 7.3687 -9.7853 26 1 -5.6664 9.2554 -8.6520 27 1 -3.3491 9.3710 -9.3569 28 6 1.6316 5.6667 -2.9098 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 0.5490 2.1252 1.3969 35 1 2.0699 1.5874 2.1492 36 1 1.9983 3.1542 1.3072 37 1 4.0030 0.9834 0.7597 38 1 3.8571 0.8799 -1.0113 39 1 5.9619 2.3092 -1.0935 40 1 5.9505 3.9223 -0.3403 41 1 5.9612 2.4639 0.6798 42 1 2.6755 3.0755 -1.7587 43 1 2.8190 5.2114 -0.6081 44 1 4.4898 5.3327 -1.2096 45 1 4.9402 5.7023 -3.5623 46 1 4.1135 6.6082 -5.6960 47 1 1.6975 6.9227 -6.0481 48 1 -0.1343 7.8765 -5.7003 49 1 -0.2535 6.2284 -6.3622 50 1 -2.5515 6.0288 -5.4535 51 1 -2.4330 7.6768 -4.7913 52 1 -5.7183 7.6216 -6.4536 53 1 0.9359 5.4019 -2.1274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237018802.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:15 Heat of formation + Delta-G solvation = -68.874613 kcal Electronic energy + Delta-G solvation = -26366.726958 eV Core-core repulsion = 22815.342226 eV Total energy + Delta-G solvation = -3551.384731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.10041 -39.56638 -38.52874 -36.36790 -35.47622 -33.49187 -32.59010 -31.11337 -30.56242 -30.10843 -27.79242 -27.09770 -26.05717 -24.54269 -23.46984 -23.30655 -21.60538 -21.46134 -20.49113 -19.14696 -18.17213 -17.16277 -16.96408 -16.89691 -16.65230 -16.64043 -16.28080 -15.83812 -15.52613 -15.29299 -14.51316 -14.39018 -14.34609 -14.29178 -14.20702 -13.98307 -13.47995 -13.31914 -13.12055 -13.09552 -12.99102 -12.81578 -12.73883 -12.65648 -12.56248 -12.49468 -12.30372 -12.16703 -11.88408 -11.81195 -11.59756 -11.57469 -11.43619 -11.36050 -11.33754 -11.04938 -10.63548 -9.85695 -9.30184 -9.09408 -8.28186 -6.41980 0.34101 0.54364 1.39996 1.42341 1.53511 2.26031 2.50172 2.76374 3.06265 3.40270 3.72759 3.80872 3.90906 3.95624 3.97590 4.14270 4.21912 4.25024 4.30708 4.34415 4.39780 4.45911 4.49672 4.55644 4.56854 4.63209 4.68744 4.70672 4.72193 4.79592 4.83678 4.97218 5.03035 5.04747 5.10395 5.11312 5.13556 5.21658 5.24001 5.30013 5.30635 5.42669 5.44723 5.47995 5.51348 5.52690 5.54296 5.65103 5.67683 5.90434 6.06185 6.15705 6.43449 6.56480 6.72747 7.28224 8.85070 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.002354 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.451457 B =11892.350757 C =13625.948315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.097 4.097 4 H 0.055 0.945 5 C -0.149 4.149 6 C -0.110 4.110 7 C 0.080 3.920 8 H 0.048 0.952 9 C -0.137 4.137 10 N -0.684 5.684 11 C 0.107 3.893 12 C -0.044 4.044 13 C -0.140 4.140 14 C -0.079 4.079 15 C -0.223 4.223 16 C 0.107 3.893 17 O -0.343 6.343 18 C 0.085 3.915 19 C 0.029 3.971 20 C -0.546 4.546 21 H 0.071 0.929 22 C 0.001 3.999 23 N -0.931 5.931 24 Si 0.976 3.024 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.259 1.259 28 C -0.165 4.165 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.339 0.661 43 H 0.039 0.961 44 H 0.095 0.905 45 H 0.147 0.853 46 H 0.150 0.850 47 H 0.126 0.874 48 H 0.059 0.941 49 H 0.059 0.941 50 H -0.002 1.002 51 H -0.002 1.002 52 H 0.267 0.733 53 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.103 -11.679 14.131 28.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C -0.115 4.115 4 H 0.073 0.927 5 C -0.206 4.206 6 C -0.147 4.147 7 C -0.029 4.029 8 H 0.066 0.934 9 C -0.195 4.195 10 N -0.318 5.318 11 C -0.021 4.021 12 C -0.045 4.045 13 C -0.159 4.159 14 C -0.096 4.096 15 C -0.242 4.242 16 C 0.061 3.939 17 O -0.257 6.257 18 C 0.011 3.989 19 C -0.008 4.008 20 C -0.584 4.584 21 H 0.089 0.911 22 C -0.197 4.197 23 N -0.571 5.571 24 Si 0.800 3.200 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.183 1.183 28 C -0.184 4.184 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.160 0.840 43 H 0.057 0.943 44 H 0.113 0.887 45 H 0.165 0.835 46 H 0.168 0.832 47 H 0.144 0.856 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.016 0.984 51 H 0.016 0.984 52 H 0.076 0.924 53 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 22.378 -11.725 14.017 28.892 hybrid contribution -1.836 0.602 -0.408 1.975 sum 20.542 -11.123 13.609 27.035 Atomic orbital electron populations 1.21853 0.96341 1.01740 1.01575 1.21521 0.95511 0.95911 1.02245 1.21208 0.95816 0.96540 0.97971 0.92651 1.21922 1.01241 1.00189 0.97229 1.21773 0.94393 0.95719 1.02847 1.21658 0.96172 0.95089 0.89965 0.93395 1.21771 0.93950 1.01863 1.01874 1.60650 1.33911 1.03755 1.33474 1.20866 1.01150 0.88416 0.91701 1.19701 0.91129 0.96799 0.96850 1.21158 1.00513 1.01244 0.92939 1.21245 0.93910 0.96389 0.98095 1.21494 0.95058 1.07864 0.99767 1.19478 0.82758 0.96191 0.95433 1.86077 1.21224 1.79498 1.38919 1.22845 0.96892 0.97005 0.82148 1.18960 0.89074 0.95981 0.96825 1.21394 0.93048 1.43545 1.00402 0.91133 1.26055 0.96601 0.95549 1.01522 1.70126 1.01819 1.48787 1.36327 0.85277 0.77934 0.78598 0.78222 1.19494 1.20602 1.18298 1.20413 0.96173 1.05843 0.95964 0.93818 0.92440 0.92348 0.91172 0.92079 0.92981 0.91748 0.93128 0.90077 0.91505 0.92614 0.92908 0.91496 0.84046 0.94326 0.88656 0.83482 0.83215 0.85608 0.92272 0.92310 0.98397 0.98378 0.92415 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.67 71.98 0.70 -1.75 16 2 C -0.11 -1.58 5.40 30.59 0.17 -1.41 16 3 C -0.10 -1.39 2.29 -10.80 -0.02 -1.41 16 4 H 0.06 0.98 6.29 -2.39 -0.02 0.97 16 5 C -0.15 -2.06 8.71 71.98 0.63 -1.44 16 6 C -0.11 -1.40 4.27 30.60 0.13 -1.26 16 7 C 0.08 1.12 2.51 44.92 0.11 1.23 16 8 H 0.05 0.68 6.00 -2.39 -0.01 0.67 16 9 C -0.14 -1.69 9.41 71.98 0.68 -1.01 16 10 N -0.68 -12.19 6.30 -495.57 -3.12 -15.31 16 11 C 0.11 1.99 5.61 85.56 0.48 2.47 16 12 C -0.04 -1.07 5.39 -19.88 -0.11 -1.18 16 13 C -0.14 -3.13 9.70 22.28 0.22 -2.92 16 14 C -0.08 -1.92 10.04 22.26 0.22 -1.70 16 15 C -0.22 -7.00 9.04 22.37 0.20 -6.79 16 16 C 0.11 3.85 6.69 22.51 0.15 4.00 16 17 O -0.34 -15.00 10.14 -92.47 -0.94 -15.94 16 18 C 0.09 3.84 4.68 71.98 0.34 4.18 16 19 C 0.03 1.60 5.34 29.85 0.16 1.76 16 20 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 21 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 22 C 0.00 0.07 5.46 84.66 0.46 0.53 16 23 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 24 Si 0.98 43.77 29.54 68.60 2.03 45.80 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 28 C -0.16 -5.05 9.64 22.37 0.22 -4.83 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.86 6.56 -2.39 -0.02 0.85 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.78 6.56 -2.39 -0.02 0.77 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.73 6.46 -2.39 -0.02 0.71 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 40 H 0.05 0.66 7.45 -2.39 -0.02 0.64 16 41 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.34 6.75 6.41 -89.69 -0.57 6.17 16 43 H 0.04 0.72 8.00 -2.39 -0.02 0.70 16 44 H 0.10 1.50 7.38 -2.39 -0.02 1.48 16 45 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 46 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 47 H 0.13 3.93 6.30 -2.91 -0.02 3.91 16 48 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 49 H 0.06 2.50 7.66 -2.38 -0.02 2.48 16 50 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 51 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 52 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 53 H 0.12 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -65.48 416.07 3.49 -61.98 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.28 Total: 22.82 kcal Atomic # 6 Polarization: -47.43 SS G_CDS: 4.96 Total: -42.48 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -2.84 Total: -72.19 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.94 Total: -15.94 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.48 3.49 -61.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237018802.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.892 kcal (2) G-P(sol) polarization free energy of solvation -65.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds