Wall clock time and date at job start Tue Mar 31 2020 12:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46942 * 2 1 4 4 H 1.09000 * 109.47384 * 305.00398 * 3 2 1 5 5 C 1.53005 * 109.46857 * 64.99908 * 3 2 1 6 6 C 1.52991 * 109.47250 * 184.99837 * 3 2 1 7 7 C 1.52996 * 109.47226 * 174.14284 * 6 3 2 8 8 H 1.09003 * 109.47392 * 55.75165 * 7 6 3 9 9 C 1.52994 * 109.47150 * 295.74758 * 7 6 3 10 10 N 1.46907 * 109.47340 * 175.75102 * 7 6 3 11 11 C 1.46895 * 111.00217 * 206.06377 * 10 7 6 12 12 C 1.50692 * 109.47600 * 179.97438 * 11 10 7 13 13 C 1.38294 * 119.97272 * 269.73128 * 12 11 10 14 14 C 1.38245 * 120.10940 * 179.72510 * 13 12 11 15 15 C 1.38162 * 120.05581 * 0.53665 * 14 13 12 16 16 C 1.38707 * 119.94719 * 359.73551 * 15 14 13 17 17 O 1.35898 * 120.05630 * 179.97438 * 16 15 14 18 18 C 1.42903 * 117.00187 * 0.02562 * 17 16 15 19 19 C 1.53000 * 109.47248 * 180.02562 * 18 17 16 20 20 C 1.50694 * 109.47265 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99878 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00254 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00247 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46815 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47097 * 119.99629 * 24 22 20 27 27 H 1.48493 * 109.47036 * 239.99569 * 24 22 20 28 28 C 1.38120 * 119.97438 * 89.99232 * 12 11 10 29 29 H 1.08999 * 109.46699 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47131 * 299.99580 * 1 2 3 31 31 H 1.09001 * 109.46826 * 59.99805 * 1 2 3 32 32 H 1.08998 * 109.47629 * 240.00434 * 2 1 3 33 33 H 1.08996 * 109.47470 * 119.99943 * 2 1 3 34 34 H 1.08998 * 109.47167 * 176.18210 * 5 3 2 35 35 H 1.09004 * 109.47393 * 296.18423 * 5 3 2 36 36 H 1.09006 * 109.47323 * 56.18324 * 5 3 2 37 37 H 1.09003 * 109.47179 * 54.13865 * 6 3 2 38 38 H 1.08998 * 109.47260 * 294.14403 * 6 3 2 39 39 H 1.09004 * 109.47410 * 179.97438 * 9 7 6 40 40 H 1.09002 * 109.47762 * 300.00184 * 9 7 6 41 41 H 1.09005 * 109.46924 * 60.00393 * 9 7 6 42 42 H 1.00907 * 110.99754 * 330.01635 * 10 7 6 43 43 H 1.09007 * 109.47043 * 300.00013 * 11 10 7 44 44 H 1.08999 * 109.47172 * 59.99676 * 11 10 7 45 45 H 1.07999 * 119.93989 * 359.96569 * 13 12 11 46 46 H 1.08001 * 119.96889 * 180.24583 * 14 13 12 47 47 H 1.08006 * 120.02334 * 179.74946 * 15 14 13 48 48 H 1.08992 * 109.47187 * 300.00496 * 18 17 16 49 49 H 1.08998 * 109.46376 * 60.00561 * 18 17 16 50 50 H 1.09005 * 109.47149 * 300.00552 * 19 18 17 51 51 H 1.09001 * 109.46849 * 60.00384 * 19 18 17 52 52 H 0.97002 * 120.00282 * 180.02562 * 23 22 20 53 53 H 1.08002 * 120.02894 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9817 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4445 -0.1257 7 6 4.0626 2.8837 -0.2725 8 1 3.7055 3.4793 0.5677 9 6 3.5319 3.4761 -1.5795 10 7 5.5315 2.8944 -0.2910 11 6 6.0547 4.1829 0.1821 12 6 7.5610 4.1560 0.1497 13 6 8.2684 3.7301 1.2590 14 6 9.6502 3.6989 1.2305 15 6 10.3282 4.1038 0.0968 16 6 9.6212 4.5367 -1.0153 17 8 10.2858 4.9359 -2.1314 18 6 11.7133 4.8833 -2.0901 19 6 12.2803 5.3679 -3.4260 20 6 13.7856 5.3118 -3.3828 21 1 14.2877 4.9657 -2.4914 22 6 14.5219 5.7034 -4.4807 23 7 13.9106 6.1254 -5.5659 24 14 16.3879 5.6346 -4.4268 25 1 16.8264 5.1268 -3.1019 26 1 16.8807 4.7255 -5.4925 27 1 16.9399 6.9961 -4.6432 28 6 8.2342 4.5617 -0.9861 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8935 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0559 3.1317 1.3371 35 1 0.5483 2.1858 1.3651 36 1 2.0129 1.5495 2.1515 37 1 3.8578 0.8674 -1.0027 38 1 4.0034 0.9976 0.7664 39 1 3.8862 4.5016 -1.6840 40 1 3.8890 2.8806 -2.4198 41 1 2.4420 3.4683 -1.5658 42 1 5.9055 2.1308 0.2524 43 1 5.6912 4.9820 -0.4642 44 1 5.7167 4.3595 1.2032 45 1 7.7403 3.4178 2.1478 46 1 10.2003 3.3622 2.0967 47 1 11.4079 4.0830 0.0764 48 1 12.0774 5.5243 -1.2874 49 1 12.0339 3.8573 -1.9097 50 1 11.9161 4.7271 -4.2292 51 1 11.9597 6.3939 -3.6061 52 1 14.4286 6.4006 -6.3385 53 1 7.6814 4.8979 -1.8509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237020510.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:19 Heat of formation + Delta-G solvation = -54.158521 kcal Electronic energy + Delta-G solvation = -25754.384699 eV Core-core repulsion = 22203.638105 eV Total energy + Delta-G solvation = -3550.746594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.82439 -38.73202 -37.39619 -35.79700 -33.38079 -32.62369 -30.87272 -30.36096 -29.30081 -28.85744 -27.33254 -25.66028 -24.85176 -23.85461 -22.31058 -21.60384 -20.99077 -20.21223 -19.81650 -17.59639 -16.37854 -16.21291 -15.84579 -15.68369 -15.58790 -15.30823 -15.23369 -14.62221 -14.46381 -14.23864 -13.95228 -13.56748 -13.42806 -13.10263 -12.92073 -12.63150 -12.47261 -12.37672 -12.32597 -12.26497 -12.17424 -11.84985 -11.45623 -11.42618 -11.40955 -11.26426 -11.18652 -10.92821 -10.86477 -10.78364 -10.68084 -10.53852 -10.39672 -9.84534 -9.64521 -9.27358 -8.75040 -8.54959 -8.44225 -7.81846 -6.09488 -4.14074 1.47081 1.69928 3.27109 3.34120 3.37766 3.74179 3.86754 4.15211 4.36795 4.41681 4.44764 4.59124 4.75741 4.83493 4.93029 4.98533 5.02305 5.09828 5.15209 5.17847 5.20122 5.26994 5.29488 5.32168 5.42417 5.48861 5.51909 5.59047 5.60344 5.62938 5.67868 5.70347 5.73369 5.77376 5.84771 5.87676 5.97841 6.04544 6.05404 6.08498 6.18911 6.21774 6.56927 6.59417 6.69986 6.75414 6.83087 7.02332 7.20798 7.52592 7.65668 7.82933 8.08858 8.25133 8.91751 9.50271 11.02103 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.001728 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.012544 B =16201.278144 C =16764.751177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.092 4.092 4 H 0.076 0.924 5 C -0.151 4.151 6 C -0.117 4.117 7 C 0.081 3.919 8 H 0.046 0.954 9 C -0.142 4.142 10 N -0.680 5.680 11 C 0.104 3.896 12 C -0.051 4.051 13 C -0.167 4.167 14 C -0.081 4.081 15 C -0.211 4.211 16 C 0.145 3.855 17 O -0.315 6.315 18 C 0.065 3.935 19 C 0.025 3.975 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.898 3.102 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.138 4.138 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.342 0.658 43 H 0.080 0.920 44 H 0.037 0.963 45 H 0.113 0.887 46 H 0.119 0.881 47 H 0.129 0.871 48 H 0.050 0.950 49 H 0.050 0.950 50 H 0.028 0.972 51 H 0.028 0.972 52 H 0.263 0.737 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.397 -9.266 15.479 31.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.111 4.111 4 H 0.094 0.906 5 C -0.208 4.208 6 C -0.154 4.154 7 C -0.028 4.028 8 H 0.064 0.936 9 C -0.200 4.200 10 N -0.312 5.312 11 C -0.025 4.025 12 C -0.051 4.051 13 C -0.186 4.186 14 C -0.099 4.099 15 C -0.230 4.230 16 C 0.098 3.902 17 O -0.228 6.228 18 C -0.009 4.009 19 C -0.013 4.013 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.158 4.158 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.161 0.839 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.131 0.869 46 H 0.137 0.863 47 H 0.147 0.853 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.046 0.954 51 H 0.046 0.954 52 H 0.072 0.928 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.395 -8.946 14.437 30.551 hybrid contribution 1.182 -0.143 1.061 1.595 sum -24.213 -9.089 15.498 30.151 Atomic orbital electron populations 1.21818 0.95966 1.01482 1.01850 1.21582 0.95832 0.96328 1.02004 1.21211 0.95063 0.96231 0.98626 0.90620 1.21950 1.01213 1.00543 0.97120 1.21814 0.95174 0.96153 1.02307 1.21600 0.87334 0.96169 0.97683 0.93627 1.21855 0.99685 1.01054 0.97413 1.60522 1.06324 1.04404 1.59915 1.20871 0.90591 0.92686 0.98336 1.19391 0.94412 0.98156 0.93184 1.20761 0.94110 1.05437 0.98299 1.20834 0.94074 0.97789 0.97188 1.21386 1.00742 1.06572 0.94332 1.19206 0.92022 0.92497 0.86510 1.86178 1.23088 1.79742 1.33828 1.23321 0.74656 1.00054 1.02833 1.19131 0.95029 0.97657 0.89436 1.21013 0.90500 1.44820 1.00104 0.92321 1.24989 0.98970 0.94946 0.95283 1.69987 1.35602 1.43359 1.03764 0.86435 0.85051 0.77777 0.78144 1.19647 1.20840 1.20842 1.20261 0.91103 1.05416 0.98987 0.92944 0.92595 0.92780 0.91935 0.92147 0.92543 0.92610 0.92879 0.90938 0.92145 0.92818 0.91867 0.92555 0.83928 0.90125 0.94503 0.86873 0.86280 0.85298 0.93184 0.93154 0.95361 0.95390 0.92771 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.67 37.16 0.36 -0.44 16 2 C -0.12 -0.68 5.40 -26.72 -0.14 -0.83 16 3 C -0.09 -0.55 2.25 -90.62 -0.20 -0.75 16 4 H 0.08 0.47 6.28 -51.93 -0.33 0.14 16 5 C -0.15 -0.85 8.71 37.16 0.32 -0.53 16 6 C -0.12 -0.80 4.17 -26.74 -0.11 -0.91 16 7 C 0.08 0.64 2.57 -67.71 -0.17 0.47 16 8 H 0.05 0.35 5.98 -51.93 -0.31 0.04 16 9 C -0.14 -1.17 9.18 37.15 0.34 -0.83 16 10 N -0.68 -6.60 6.30 -108.00 -0.68 -7.28 16 11 C 0.10 1.06 5.61 -4.98 -0.03 1.03 16 12 C -0.05 -0.65 5.39 -104.65 -0.56 -1.22 16 13 C -0.17 -2.03 9.70 -39.56 -0.38 -2.42 16 14 C -0.08 -1.07 10.04 -39.61 -0.40 -1.46 16 15 C -0.21 -3.37 9.04 -39.44 -0.36 -3.73 16 16 C 0.14 2.59 6.69 -39.22 -0.26 2.33 16 17 O -0.32 -6.66 10.14 -19.42 -0.20 -6.86 16 18 C 0.07 1.43 4.68 37.16 0.17 1.60 16 19 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 20 C -0.53 -14.80 9.11 -34.45 -0.31 -15.11 16 21 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 24 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C -0.14 -2.17 9.64 -39.43 -0.38 -2.55 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.28 6.65 -51.93 -0.35 -0.07 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.33 6.34 -51.93 -0.33 0.00 16 35 H 0.05 0.29 6.75 -51.93 -0.35 -0.06 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.40 8.04 -51.93 -0.42 -0.02 16 39 H 0.05 0.47 7.52 -51.93 -0.39 0.08 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.39 6.42 -51.93 -0.33 0.05 16 42 H 0.34 3.16 8.27 -39.29 -0.32 2.83 16 43 H 0.08 0.84 7.45 -51.92 -0.39 0.45 16 44 H 0.04 0.33 7.99 -51.93 -0.42 -0.08 16 45 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.13 2.03 6.30 -52.48 -0.33 1.70 16 48 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 49 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 50 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 52 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 53 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 416.05 15.07 6.27 6.27 Total: -1.00 -29.95 416.05 -10.93 -40.88 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -9.67 Total: -0.29 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -2.37 Total: -23.21 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.06 Total: -33.15 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.20 Total: -6.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -29.95 -10.93 -40.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237020510.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.276 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds