Wall clock time and date at job start Tue Mar 31 2020 12:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46942 * 2 1 4 4 H 1.09000 * 109.47384 * 305.00398 * 3 2 1 5 5 C 1.53005 * 109.46857 * 64.99908 * 3 2 1 6 6 C 1.52991 * 109.47250 * 184.99837 * 3 2 1 7 7 C 1.52996 * 109.47226 * 174.14284 * 6 3 2 8 8 H 1.09003 * 109.47392 * 55.75165 * 7 6 3 9 9 C 1.52994 * 109.47150 * 295.74758 * 7 6 3 10 10 N 1.46907 * 109.47340 * 175.75102 * 7 6 3 11 11 C 1.46895 * 111.00217 * 206.06377 * 10 7 6 12 12 C 1.50692 * 109.47600 * 179.97438 * 11 10 7 13 13 C 1.38294 * 119.97272 * 269.73128 * 12 11 10 14 14 C 1.38245 * 120.10940 * 179.72510 * 13 12 11 15 15 C 1.38162 * 120.05581 * 0.53665 * 14 13 12 16 16 C 1.38707 * 119.94719 * 359.73551 * 15 14 13 17 17 O 1.35898 * 120.05630 * 179.97438 * 16 15 14 18 18 C 1.42903 * 117.00187 * 0.02562 * 17 16 15 19 19 C 1.53000 * 109.47248 * 180.02562 * 18 17 16 20 20 C 1.50694 * 109.47265 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99878 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00254 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00247 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46815 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47097 * 119.99629 * 24 22 20 27 27 H 1.48493 * 109.47036 * 239.99569 * 24 22 20 28 28 C 1.38120 * 119.97438 * 89.99232 * 12 11 10 29 29 H 1.08999 * 109.46699 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47131 * 299.99580 * 1 2 3 31 31 H 1.09001 * 109.46826 * 59.99805 * 1 2 3 32 32 H 1.08998 * 109.47629 * 240.00434 * 2 1 3 33 33 H 1.08996 * 109.47470 * 119.99943 * 2 1 3 34 34 H 1.08998 * 109.47167 * 176.18210 * 5 3 2 35 35 H 1.09004 * 109.47393 * 296.18423 * 5 3 2 36 36 H 1.09006 * 109.47323 * 56.18324 * 5 3 2 37 37 H 1.09003 * 109.47179 * 54.13865 * 6 3 2 38 38 H 1.08998 * 109.47260 * 294.14403 * 6 3 2 39 39 H 1.09004 * 109.47410 * 179.97438 * 9 7 6 40 40 H 1.09002 * 109.47762 * 300.00184 * 9 7 6 41 41 H 1.09005 * 109.46924 * 60.00393 * 9 7 6 42 42 H 1.00907 * 110.99754 * 330.01635 * 10 7 6 43 43 H 1.09007 * 109.47043 * 300.00013 * 11 10 7 44 44 H 1.08999 * 109.47172 * 59.99676 * 11 10 7 45 45 H 1.07999 * 119.93989 * 359.96569 * 13 12 11 46 46 H 1.08001 * 119.96889 * 180.24583 * 14 13 12 47 47 H 1.08006 * 120.02334 * 179.74946 * 15 14 13 48 48 H 1.08992 * 109.47187 * 300.00496 * 18 17 16 49 49 H 1.08998 * 109.46376 * 60.00561 * 18 17 16 50 50 H 1.09005 * 109.47149 * 300.00552 * 19 18 17 51 51 H 1.09001 * 109.46849 * 60.00384 * 19 18 17 52 52 H 0.97002 * 120.00282 * 180.02562 * 23 22 20 53 53 H 1.08002 * 120.02894 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9817 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4445 -0.1257 7 6 4.0626 2.8837 -0.2725 8 1 3.7055 3.4793 0.5677 9 6 3.5319 3.4761 -1.5795 10 7 5.5315 2.8944 -0.2910 11 6 6.0547 4.1829 0.1821 12 6 7.5610 4.1560 0.1497 13 6 8.2684 3.7301 1.2590 14 6 9.6502 3.6989 1.2305 15 6 10.3282 4.1038 0.0968 16 6 9.6212 4.5367 -1.0153 17 8 10.2858 4.9359 -2.1314 18 6 11.7133 4.8833 -2.0901 19 6 12.2803 5.3679 -3.4260 20 6 13.7856 5.3118 -3.3828 21 1 14.2877 4.9657 -2.4914 22 6 14.5219 5.7034 -4.4807 23 7 13.9106 6.1254 -5.5659 24 14 16.3879 5.6346 -4.4268 25 1 16.8264 5.1268 -3.1019 26 1 16.8807 4.7255 -5.4925 27 1 16.9399 6.9961 -4.6432 28 6 8.2342 4.5617 -0.9861 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8935 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0559 3.1317 1.3371 35 1 0.5483 2.1858 1.3651 36 1 2.0129 1.5495 2.1515 37 1 3.8578 0.8674 -1.0027 38 1 4.0034 0.9976 0.7664 39 1 3.8862 4.5016 -1.6840 40 1 3.8890 2.8806 -2.4198 41 1 2.4420 3.4683 -1.5658 42 1 5.9055 2.1308 0.2524 43 1 5.6912 4.9820 -0.4642 44 1 5.7167 4.3595 1.2032 45 1 7.7403 3.4178 2.1478 46 1 10.2003 3.3622 2.0967 47 1 11.4079 4.0830 0.0764 48 1 12.0774 5.5243 -1.2874 49 1 12.0339 3.8573 -1.9097 50 1 11.9161 4.7271 -4.2292 51 1 11.9597 6.3939 -3.6061 52 1 14.4286 6.4006 -6.3385 53 1 7.6814 4.8979 -1.8509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237020510.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:18 Heat of formation + Delta-G solvation = -69.374331 kcal Electronic energy + Delta-G solvation = -25755.044506 eV Core-core repulsion = 22203.638105 eV Total energy + Delta-G solvation = -3551.406401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.08734 -39.47267 -38.56132 -36.52660 -35.47096 -33.44661 -32.58614 -31.26612 -30.54455 -29.67685 -27.89203 -27.10732 -26.17434 -24.53013 -23.49985 -23.26029 -21.57434 -21.54690 -20.41717 -19.10044 -18.14801 -17.17013 -16.94961 -16.88151 -16.72194 -16.46570 -16.39152 -16.00884 -15.25248 -14.92756 -14.79012 -14.49151 -14.34615 -14.26852 -14.22850 -13.92392 -13.74610 -13.47203 -13.08208 -12.95771 -12.90881 -12.89433 -12.70184 -12.61776 -12.55712 -12.38682 -12.37599 -12.01759 -11.84552 -11.81687 -11.60702 -11.55415 -11.39347 -11.34951 -11.26704 -11.07809 -10.63699 -9.81717 -9.32668 -9.08078 -8.27384 -6.41397 0.35163 0.53814 1.40568 1.41748 1.55261 2.27058 2.51258 2.75615 3.07021 3.33431 3.80359 3.84434 3.92561 3.95440 4.10147 4.14195 4.23290 4.25710 4.29504 4.32063 4.36752 4.43803 4.48004 4.55159 4.59296 4.67681 4.68972 4.72547 4.74856 4.81833 4.86509 4.97773 5.03091 5.06743 5.10478 5.12273 5.19367 5.25622 5.27410 5.30793 5.32946 5.39394 5.45007 5.45389 5.52524 5.58379 5.61494 5.63462 5.68409 5.90810 6.06702 6.15215 6.50789 6.57926 6.73531 7.28923 8.85995 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.001728 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.012544 B =16201.278144 C =16764.751177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.072 0.928 5 C -0.149 4.149 6 C -0.110 4.110 7 C 0.085 3.915 8 H 0.055 0.945 9 C -0.142 4.142 10 N -0.693 5.693 11 C 0.109 3.891 12 C -0.045 4.045 13 C -0.152 4.152 14 C -0.077 4.077 15 C -0.223 4.223 16 C 0.105 3.895 17 O -0.343 6.343 18 C 0.085 3.915 19 C 0.027 3.973 20 C -0.547 4.547 21 H 0.071 0.929 22 C 0.001 3.999 23 N -0.931 5.931 24 Si 0.978 3.022 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.276 1.276 28 C -0.153 4.153 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.346 0.654 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.126 0.874 48 H 0.060 0.940 49 H 0.059 0.941 50 H -0.003 1.003 51 H -0.002 1.002 52 H 0.267 0.733 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.763 -10.323 18.462 33.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.091 0.909 5 C -0.206 4.206 6 C -0.148 4.148 7 C -0.024 4.024 8 H 0.073 0.927 9 C -0.200 4.200 10 N -0.325 5.325 11 C -0.020 4.020 12 C -0.045 4.045 13 C -0.171 4.171 14 C -0.095 4.095 15 C -0.242 4.242 16 C 0.060 3.940 17 O -0.258 6.258 18 C 0.011 3.989 19 C -0.010 4.010 20 C -0.584 4.584 21 H 0.089 0.911 22 C -0.197 4.197 23 N -0.570 5.570 24 Si 0.801 3.199 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.172 4.172 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.165 0.835 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.169 0.831 46 H 0.169 0.831 47 H 0.144 0.856 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.016 0.984 51 H 0.016 0.984 52 H 0.076 0.924 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -25.785 -10.013 17.443 32.702 hybrid contribution 1.124 0.155 0.187 1.150 sum -24.661 -9.858 17.630 31.878 Atomic orbital electron populations 1.21813 0.95537 1.01723 1.01982 1.21570 0.96207 0.96085 1.01831 1.21171 0.94317 0.96442 0.98842 0.90938 1.21928 1.01536 1.00362 0.96763 1.21747 0.95800 0.95224 1.02033 1.21599 0.86243 0.96945 0.97563 0.92705 1.21856 1.00611 1.00222 0.97263 1.60474 1.07476 1.04227 1.60355 1.20833 0.88665 0.92922 0.99558 1.19694 0.95900 0.96649 0.92269 1.21209 0.93871 1.03059 0.98934 1.21222 0.94805 0.96478 0.96999 1.21498 1.00784 1.07145 0.94782 1.19534 0.92813 0.95218 0.86474 1.86085 1.22281 1.81240 1.36182 1.22844 0.75707 1.00335 0.99997 1.18975 0.95309 0.95375 0.91317 1.21428 0.91243 1.44950 1.00799 0.91082 1.26055 1.04834 0.94155 0.94664 1.70131 1.37985 1.44215 1.04673 0.85215 0.77851 0.78031 0.78817 1.18087 1.20221 1.20180 1.20392 0.90407 1.06351 1.00071 0.92693 0.92215 0.92885 0.92436 0.92011 0.92643 0.92170 0.92698 0.92046 0.91571 0.93700 0.93330 0.91152 0.83455 0.90688 0.92213 0.83112 0.83063 0.85606 0.92216 0.92307 0.98421 0.98351 0.92439 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 71.98 0.70 -0.68 16 2 C -0.12 -1.19 5.40 30.60 0.17 -1.03 16 3 C -0.09 -0.91 2.25 -10.79 -0.02 -0.94 16 4 H 0.07 0.80 6.28 -2.39 -0.01 0.78 16 5 C -0.15 -1.35 8.71 71.98 0.63 -0.73 16 6 C -0.11 -1.33 4.17 30.59 0.13 -1.20 16 7 C 0.09 1.21 2.57 44.91 0.12 1.32 16 8 H 0.06 0.70 5.98 -2.39 -0.01 0.69 16 9 C -0.14 -2.25 9.18 71.98 0.66 -1.58 16 10 N -0.69 -12.27 6.30 -495.59 -3.12 -15.39 16 11 C 0.11 2.00 5.61 85.56 0.48 2.48 16 12 C -0.04 -1.07 5.39 -19.88 -0.11 -1.18 16 13 C -0.15 -3.16 9.70 22.28 0.22 -2.95 16 14 C -0.08 -1.82 10.04 22.25 0.22 -1.59 16 15 C -0.22 -6.98 9.04 22.36 0.20 -6.77 16 16 C 0.10 3.85 6.69 22.51 0.15 4.00 16 17 O -0.34 -15.33 10.14 -92.40 -0.94 -16.26 16 18 C 0.09 3.89 4.68 71.98 0.34 4.22 16 19 C 0.03 1.54 5.34 29.85 0.16 1.70 16 20 C -0.55 -31.39 9.11 25.60 0.23 -31.16 16 21 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 22 C 0.00 0.08 5.46 84.65 0.46 0.55 16 23 N -0.93 -57.35 13.29 21.44 0.28 -57.07 16 24 Si 0.98 43.93 29.54 68.60 2.03 45.96 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 28 C -0.15 -4.87 9.64 22.37 0.22 -4.66 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.49 6.65 -2.39 -0.02 0.47 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 0.52 6.34 -2.39 -0.02 0.50 16 35 H 0.06 0.50 6.75 -2.38 -0.02 0.48 16 36 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.74 8.04 -2.39 -0.02 0.72 16 39 H 0.04 0.78 7.52 -2.38 -0.02 0.76 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.90 6.42 -2.38 -0.02 0.88 16 42 H 0.35 5.58 8.27 -89.69 -0.74 4.83 16 43 H 0.07 1.48 7.45 -2.38 -0.02 1.46 16 44 H 0.06 0.86 7.99 -2.39 -0.02 0.84 16 45 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 47 H 0.13 3.91 6.30 -2.91 -0.02 3.90 16 48 H 0.06 2.55 7.66 -2.39 -0.02 2.53 16 49 H 0.06 2.52 7.66 -2.39 -0.02 2.50 16 50 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 51 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 52 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 53 H 0.12 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -67.09 416.05 3.31 -63.78 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.12 Total: 19.17 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 4.94 Total: -40.19 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -2.84 Total: -72.46 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.94 Total: -16.26 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -67.09 3.31 -63.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237020510.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.592 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds