Wall clock time and date at job start Tue Mar 31 2020 12:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47390 * 2 1 4 4 C 1.53004 * 109.46991 * 240.00078 * 2 1 3 5 5 C 1.50695 * 109.47083 * 60.00127 * 4 2 1 6 6 H 1.08009 * 120.00159 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00021 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00135 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00106 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46869 * 90.00014 * 9 7 5 11 11 H 1.48501 * 109.47244 * 210.00056 * 9 7 5 12 12 H 1.48504 * 109.47207 * 330.00341 * 9 7 5 13 13 C 1.53000 * 109.47188 * 120.00285 * 2 1 3 14 14 N 1.46903 * 109.47094 * 299.99626 * 13 2 1 15 15 C 1.46896 * 110.99892 * 179.97438 * 14 13 2 16 16 C 1.53004 * 109.47159 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47523 * 180.02562 * 16 15 14 18 18 O 1.42893 * 109.47460 * 179.97438 * 17 16 15 19 19 C 1.42896 * 114.00368 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.47376 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.09009 * 109.47162 * 299.99870 * 1 2 3 28 28 H 1.09001 * 109.47408 * 59.99553 * 1 2 3 29 29 H 1.09004 * 109.47508 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47439 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47210 * 300.00568 * 3 2 1 32 32 H 1.09009 * 109.47315 * 60.00229 * 3 2 1 33 33 H 1.08999 * 109.46953 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.46784 * 299.99936 * 4 2 1 35 35 H 0.96998 * 120.00388 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47177 * 180.02562 * 13 2 1 37 37 H 1.09007 * 109.47479 * 59.99517 * 13 2 1 38 38 H 1.00897 * 110.99729 * 303.95594 * 14 13 2 39 39 H 1.08993 * 109.47261 * 60.00323 * 15 14 13 40 40 H 1.09004 * 109.47681 * 300.00002 * 15 14 13 41 41 H 1.08998 * 109.47484 * 59.99641 * 16 15 14 42 42 H 1.09001 * 109.46810 * 299.99905 * 16 15 14 43 43 H 1.09006 * 109.46948 * 59.99612 * 17 16 15 44 44 H 1.08998 * 109.47057 * 300.00511 * 17 16 15 45 45 H 1.08995 * 109.47430 * 59.99865 * 19 18 17 46 46 H 1.09004 * 109.46934 * 300.00059 * 19 18 17 47 47 H 1.09005 * 109.47610 * 60.00060 * 20 19 18 48 48 H 1.09000 * 109.47256 * 299.99402 * 20 19 18 49 49 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 50 50 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 51 51 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 52 52 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 53 53 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8711 -0.4815 -3.7319 8 7 2.6271 -1.5508 -3.8527 9 14 1.2478 0.3987 -5.2572 10 1 2.2253 1.4411 -5.6612 11 1 1.0836 -0.5805 -6.3614 12 1 -0.0608 1.0353 -4.9613 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0209 -0.6953 3.6702 16 6 1.4914 0.0525 4.8956 17 6 1.9820 -0.6413 6.1679 18 8 1.4879 0.0575 7.3122 19 6 1.8910 -0.5115 8.5595 20 6 1.3073 0.3130 9.7086 21 6 1.7318 -0.2875 11.0240 22 6 2.9038 0.1287 11.6276 23 6 3.2929 -0.4217 12.8344 24 6 2.5099 -1.3878 13.4380 25 6 1.3407 -1.8078 12.8319 26 6 0.9491 -1.2541 11.6273 27 1 -0.3634 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1299 -0.7209 -1.2495 34 1 1.6765 -1.7490 -1.2492 35 1 2.8621 -1.8818 -4.7336 36 1 3.1299 -0.7209 1.2494 37 1 1.6766 -1.7490 1.2493 38 1 1.8198 0.9435 2.4401 39 1 3.1107 -0.6956 3.6873 40 1 1.6570 -1.7227 3.6869 41 1 0.4016 0.0525 4.8784 42 1 1.8550 1.0800 4.8792 43 1 3.0719 -0.6408 6.1848 44 1 1.6189 -1.6689 6.1844 45 1 2.9789 -0.5083 8.6257 46 1 1.5259 -1.5364 8.6262 47 1 0.2192 0.3094 9.6423 48 1 1.6720 1.3380 9.6422 49 1 3.5154 0.8838 11.1562 50 1 4.2088 -0.0969 13.3058 51 1 2.8138 -1.8175 14.3812 52 1 0.7311 -2.5658 13.3013 53 1 0.0332 -1.5787 11.1561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266242044.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:02 Heat of formation + Delta-G solvation = -56.374432 kcal Electronic energy + Delta-G solvation = -25140.433095 eV Core-core repulsion = 21589.590412 eV Total energy + Delta-G solvation = -3550.842683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.79136 -38.39422 -37.64880 -35.17442 -33.84691 -32.43136 -31.32791 -31.05069 -28.83046 -26.97552 -26.30837 -25.80298 -24.10953 -23.62113 -23.01529 -22.07728 -21.60059 -21.10746 -17.82385 -17.34885 -16.76219 -16.69492 -16.21753 -15.77135 -15.45405 -15.28104 -15.11185 -14.62705 -14.27121 -13.95550 -13.85915 -13.76775 -13.40825 -13.17042 -13.10001 -12.61495 -12.56552 -12.18232 -11.98558 -11.82609 -11.77213 -11.59774 -11.38996 -11.33056 -11.17822 -11.04267 -10.91936 -10.77438 -10.73750 -10.46390 -10.23422 -10.09678 -9.85481 -9.65958 -9.36020 -9.16572 -8.99650 -8.81047 -8.30039 -8.08174 -5.94583 -3.94631 0.88271 0.95937 3.17344 3.34579 3.41179 3.44262 3.46157 4.37784 4.38008 4.49228 4.54951 4.61754 4.69966 4.70918 4.82048 4.87925 5.05295 5.08235 5.09470 5.12871 5.17274 5.32265 5.41023 5.41758 5.45038 5.50901 5.63489 5.65644 5.70004 5.72858 5.79415 5.99715 6.02443 6.08084 6.08220 6.12854 6.19144 6.28375 6.36266 6.53531 6.56252 6.69303 6.81573 6.85716 6.93858 7.23299 7.24936 7.29075 7.42057 7.68617 7.73115 7.87786 8.05810 8.50443 9.10786 9.68172 11.17129 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.048823 B = 0.001339 C = 0.001335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.357180 B =20904.993943 C =20964.155492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.060 4.060 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.686 5.686 15 C 0.061 3.939 16 C -0.115 4.115 17 C 0.066 3.934 18 O -0.389 6.389 19 C 0.069 3.931 20 C -0.080 4.080 21 C -0.082 4.082 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.115 4.115 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.012 0.988 34 H 0.015 0.985 35 H 0.258 0.742 36 H 0.023 0.977 37 H 0.066 0.934 38 H 0.339 0.661 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.123 0.877 50 H 0.122 0.878 51 H 0.121 0.879 52 H 0.122 0.878 53 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 1.275 33.672 33.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.060 4.060 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.318 5.318 15 C -0.069 4.069 16 C -0.153 4.153 17 C -0.011 4.011 18 O -0.308 6.308 19 C -0.008 4.008 20 C -0.117 4.117 21 C -0.082 4.082 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.133 4.133 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.158 0.842 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.141 0.859 50 H 0.140 0.860 51 H 0.139 0.861 52 H 0.140 0.860 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.631 0.993 33.518 33.538 hybrid contribution 0.968 0.286 -0.874 1.335 sum 0.337 1.279 32.643 32.670 Atomic orbital electron populations 1.21596 0.94958 1.00567 1.00185 1.20642 0.95923 0.95038 0.94410 1.21769 0.99656 0.96747 1.00445 1.19123 0.95864 0.95199 0.90187 1.21248 1.30700 1.11923 0.90623 0.92274 1.25012 0.95427 0.95101 0.99047 1.69965 1.37382 1.23202 1.23261 0.86665 0.79254 0.79405 0.83101 1.20842 1.21377 1.19895 1.22110 0.96290 0.98116 0.89292 1.60523 1.63762 1.06438 1.01122 1.21801 0.96768 0.98678 0.89618 1.21468 1.02726 0.99789 0.91331 1.22461 0.97632 0.95510 0.85529 1.87848 1.75001 1.54549 1.13420 1.22402 0.98371 0.96431 0.83558 1.20482 1.02065 0.99654 0.89528 1.19760 0.95214 0.97078 0.96124 1.21122 0.96238 1.00236 0.95726 1.21177 0.99799 0.97071 0.95670 1.21190 0.95221 0.97711 1.00078 1.21180 0.96917 0.99924 0.95680 1.21126 0.99862 0.96562 0.95747 0.93855 0.92704 0.94202 0.94137 0.91710 0.94766 0.96947 0.96686 0.93189 0.95898 0.91589 0.84221 0.95641 0.91138 0.90188 0.91368 0.93480 0.93205 0.93302 0.93245 0.89965 0.90008 0.85914 0.85989 0.86101 0.85973 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.06 37.15 0.30 -1.97 16 2 C -0.06 -1.20 0.60 -154.51 -0.09 -1.30 16 3 C -0.13 -2.41 7.89 37.15 0.29 -2.12 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.94 7.65 -34.44 -0.26 -14.20 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.29 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 13 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 14 N -0.69 -10.02 5.71 -113.78 -0.65 -10.67 16 15 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 16 C -0.12 -1.24 5.84 -26.73 -0.16 -1.39 16 17 C 0.07 0.64 5.94 37.16 0.22 0.86 16 18 O -0.39 -4.10 10.34 -35.23 -0.36 -4.47 16 19 C 0.07 0.57 5.92 37.15 0.22 0.79 16 20 C -0.08 -0.58 5.71 -27.88 -0.16 -0.74 16 21 C -0.08 -0.59 5.13 -104.62 -0.54 -1.13 16 22 C -0.12 -0.79 9.70 -39.58 -0.38 -1.17 16 23 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 24 C -0.12 -0.76 10.05 -39.58 -0.40 -1.15 16 25 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 26 C -0.11 -0.79 9.70 -39.58 -0.38 -1.17 16 27 H 0.04 0.77 7.60 -51.92 -0.39 0.37 16 28 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 32 H 0.03 0.54 6.57 -51.92 -0.34 0.20 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.34 4.75 6.77 -39.29 -0.27 4.48 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 48 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 49 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 50 H 0.12 0.54 8.06 -52.49 -0.42 0.11 16 51 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 52 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 53 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 420.95 15.07 6.34 6.34 Total: -1.00 -30.38 420.95 -11.34 -41.72 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -10.00 Total: -0.47 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -2.39 Total: -22.87 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.09 Total: -36.92 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.36 Total: -4.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -30.38 -11.34 -41.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266242044.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.659 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds