Wall clock time and date at job start Tue Mar 31 2020 12:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47676 * 2 1 4 4 O 1.42896 * 109.47335 * 180.02562 * 3 2 1 5 5 C 1.35906 * 116.99809 * 180.02562 * 4 3 2 6 6 C 1.38751 * 120.05795 * 359.97438 * 5 4 3 7 7 C 1.38122 * 119.94623 * 180.02562 * 6 5 4 8 8 C 1.38287 * 120.05339 * 0.02562 * 7 6 5 9 9 C 1.38244 * 120.11143 * 359.97438 * 8 7 6 10 10 C 1.38158 * 120.05890 * 359.97438 * 9 8 7 11 11 C 1.50707 * 120.03102 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46902 * 220.02795 * 11 10 9 13 13 C 1.52998 * 109.46591 * 100.02733 * 11 10 9 14 14 C 1.52999 * 109.47430 * 304.87198 * 13 11 10 15 15 C 1.52995 * 109.47032 * 174.51710 * 14 13 11 16 16 C 1.53002 * 109.46986 * 294.51344 * 14 13 11 17 17 N 1.46900 * 109.47010 * 340.02858 * 11 10 9 18 18 C 1.46897 * 110.99810 * 202.71922 * 17 11 10 19 19 C 1.53002 * 109.46894 * 184.99086 * 18 17 11 20 20 C 1.50700 * 109.46942 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00032 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00015 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00382 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99953 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46686 * 90.00139 * 24 22 20 26 26 H 1.48497 * 109.47061 * 210.00440 * 24 22 20 27 27 H 1.48499 * 109.46777 * 330.00170 * 24 22 20 28 28 H 1.08995 * 109.47164 * 59.99737 * 1 2 3 29 29 H 1.08995 * 109.47646 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46641 * 300.00131 * 1 2 3 31 31 H 1.09003 * 109.46641 * 239.99869 * 2 1 3 32 32 H 1.09001 * 109.47534 * 120.00478 * 2 1 3 33 33 H 1.08995 * 109.47372 * 59.99977 * 3 2 1 34 34 H 1.09009 * 109.46906 * 300.00462 * 3 2 1 35 35 H 1.08004 * 120.02383 * 0.02562 * 6 5 4 36 36 H 1.07995 * 119.97042 * 179.72217 * 7 6 5 37 37 H 1.07994 * 119.94502 * 179.97438 * 8 7 6 38 38 H 1.08001 * 119.97007 * 180.02562 * 9 8 7 39 39 H 1.08994 * 109.47315 * 64.87755 * 13 11 10 40 40 H 1.09003 * 109.46647 * 184.87396 * 13 11 10 41 41 H 1.08996 * 109.46855 * 54.51248 * 14 13 11 42 42 H 1.08996 * 109.47678 * 60.00041 * 15 14 13 43 43 H 1.09007 * 109.46996 * 180.02562 * 15 14 13 44 44 H 1.08998 * 109.47361 * 299.99487 * 15 14 13 45 45 H 1.08996 * 109.47446 * 306.05900 * 16 14 13 46 46 H 1.09006 * 109.47227 * 66.06184 * 16 14 13 47 47 H 1.09000 * 109.46899 * 186.05387 * 16 14 13 48 48 H 1.00902 * 110.99985 * 326.67426 * 17 11 10 49 49 H 1.08997 * 109.47107 * 304.99361 * 18 17 11 50 50 H 1.09002 * 109.47248 * 64.99679 * 18 17 11 51 51 H 1.08997 * 109.47468 * 300.00053 * 19 18 17 52 52 H 1.09002 * 109.46690 * 60.00250 * 19 18 17 53 53 H 0.96990 * 120.00269 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0861 2.6533 -0.0001 6 6 3.3316 3.8177 0.0003 7 6 3.9611 5.0472 0.0003 8 6 5.3421 5.1181 -0.0008 9 6 6.0961 3.9594 -0.0013 10 6 5.4713 2.7271 -0.0001 11 6 6.2938 1.4644 -0.0013 12 1 5.8317 0.7303 -0.6614 13 6 6.3638 0.9002 1.4192 14 6 6.8999 1.9737 2.3685 15 6 6.8417 1.4571 3.8074 16 6 8.3490 2.3008 2.0023 17 7 7.6511 1.7645 -0.4764 18 6 8.3042 0.5576 -1.0006 19 6 9.7534 0.8813 -1.3694 20 6 10.4232 -0.3567 -1.9077 21 1 9.8705 -1.2817 -1.9800 22 6 11.7417 -0.3084 -2.3080 23 7 12.3265 -1.3888 -2.7773 24 14 12.6976 1.2918 -2.1837 25 1 13.3567 1.3727 -0.8554 26 1 13.7286 1.3367 -3.2515 27 1 11.7672 2.4379 -2.3453 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 2.2530 3.7628 0.0008 36 1 3.3742 5.9537 -0.0039 37 1 5.8325 6.0803 -0.0013 38 1 7.1746 4.0174 -0.0017 39 1 5.3671 0.5971 1.7393 40 1 7.0288 0.0366 1.4347 41 1 6.2910 2.8734 2.2805 42 1 7.4507 0.5574 3.8955 43 1 7.2232 2.2221 4.4838 44 1 5.8094 1.2241 4.0684 45 1 8.9357 1.3824 1.9856 46 1 8.3784 2.7686 1.0182 47 1 8.7652 2.9845 2.7421 48 1 7.6377 2.4982 -1.1690 49 1 8.2884 -0.2233 -0.2403 50 1 7.7721 0.2124 -1.8871 51 1 9.7691 1.6622 -2.1297 52 1 10.2854 1.2265 -0.4829 53 1 13.2539 -1.3548 -3.0592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342346229.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:25 Heat of formation + Delta-G solvation = -49.266895 kcal Electronic energy + Delta-G solvation = -28026.734679 eV Core-core repulsion = 24476.200202 eV Total energy + Delta-G solvation = -3550.534477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.49046 -39.39903 -37.94434 -36.14798 -34.86714 -34.76456 -33.09453 -31.02988 -30.77169 -28.98032 -27.76152 -27.44429 -26.11154 -24.32772 -23.24893 -22.48987 -22.06587 -21.61993 -20.29706 -18.98444 -18.89602 -17.31101 -17.25540 -17.06179 -16.39931 -16.12988 -16.01743 -15.55894 -15.25126 -15.03842 -14.83363 -14.71017 -14.64301 -14.34685 -14.25589 -13.55668 -13.48237 -13.32793 -13.25875 -13.02699 -12.98971 -12.89873 -12.76802 -12.38164 -12.28398 -12.22615 -12.06438 -12.04671 -11.83772 -11.71409 -11.57817 -11.54264 -11.45502 -11.35322 -11.31508 -11.13446 -10.74981 -9.70896 -9.10173 -8.98111 -8.28235 -6.32484 0.43172 0.55617 1.38836 1.40127 1.52909 2.27825 2.38417 2.86976 3.07810 3.23144 3.70510 3.88677 3.93735 4.05725 4.07814 4.16807 4.22844 4.28049 4.29863 4.34938 4.45264 4.51552 4.54329 4.56690 4.60250 4.67288 4.75844 4.79106 4.87005 4.89154 4.96767 4.98454 5.03196 5.11134 5.12769 5.16136 5.17457 5.23861 5.28450 5.32774 5.37266 5.44654 5.46866 5.52456 5.56236 5.65769 5.67486 5.70088 5.94332 6.02732 6.19060 6.28458 6.48849 6.57315 6.76355 7.32190 8.88789 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.003307 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.049571 B = 8463.951494 C = 8969.359068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.055 3.945 4 O -0.332 6.332 5 C 0.118 3.882 6 C -0.213 4.213 7 C -0.084 4.084 8 C -0.160 4.160 9 C -0.078 4.078 10 C -0.122 4.122 11 C 0.142 3.858 12 H 0.031 0.969 13 C -0.089 4.089 14 C -0.077 4.077 15 C -0.145 4.145 16 C -0.144 4.144 17 N -0.666 5.666 18 C 0.090 3.910 19 C 0.002 3.998 20 C -0.532 4.532 21 H 0.027 0.973 22 C 0.004 3.996 23 N -0.954 5.954 24 Si 0.955 3.045 25 H -0.268 1.268 26 H -0.286 1.286 27 H -0.242 1.242 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.024 0.976 46 H 0.095 0.905 47 H 0.035 0.965 48 H 0.341 0.659 49 H 0.052 0.948 50 H 0.009 0.991 51 H 0.020 0.980 52 H 0.025 0.975 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.703 14.357 9.708 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.020 4.020 4 O -0.246 6.246 5 C 0.073 3.927 6 C -0.231 4.231 7 C -0.102 4.102 8 C -0.178 4.178 9 C -0.096 4.096 10 C -0.124 4.124 11 C 0.032 3.968 12 H 0.049 0.951 13 C -0.127 4.127 14 C -0.095 4.095 15 C -0.202 4.202 16 C -0.201 4.201 17 N -0.297 5.297 18 C -0.039 4.039 19 C -0.035 4.035 20 C -0.571 4.571 21 H 0.046 0.954 22 C -0.192 4.192 23 N -0.594 5.594 24 Si 0.778 3.222 25 H -0.193 1.193 26 H -0.212 1.212 27 H -0.166 1.166 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.114 0.886 47 H 0.054 0.946 48 H 0.160 0.840 49 H 0.071 0.929 50 H 0.027 0.973 51 H 0.038 0.962 52 H 0.043 0.957 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.208 14.013 10.260 29.794 hybrid contribution 0.250 -0.409 -1.083 1.185 sum -23.958 13.604 9.177 29.039 Atomic orbital electron populations 1.21661 0.92565 1.03104 1.02806 1.21502 0.97359 0.94326 1.03001 1.23050 0.77344 0.99451 1.02127 1.86078 1.22635 1.27301 1.88604 1.18953 0.91583 0.84881 0.97316 1.21419 1.00714 0.91997 1.08995 1.21264 0.94804 0.97548 0.96601 1.21345 0.94252 0.98761 1.03411 1.21113 1.01000 0.90808 0.96720 1.19220 0.90536 0.95456 1.07144 1.20100 0.87035 0.93225 0.96406 0.95145 1.21489 0.99934 0.97836 0.93412 1.20911 0.97287 0.97583 0.93727 1.21850 1.01174 1.00849 0.96345 1.22110 0.94611 1.00253 1.03155 1.60982 1.17374 1.09463 1.41898 1.21611 0.94510 0.91799 0.95985 1.19369 0.93106 0.95016 0.96051 1.21434 0.96983 0.96720 1.41946 0.95443 1.26016 0.98776 1.00351 0.94090 1.70073 1.13260 1.30948 1.45158 0.85588 0.78345 0.80143 0.78118 1.19321 1.21181 1.16569 0.91799 0.91281 0.91548 0.91933 0.91479 0.90928 0.91359 0.83833 0.83316 0.83943 0.84358 0.92077 0.93583 0.91487 0.93734 0.92262 0.92774 0.95675 0.88626 0.94564 0.84027 0.92937 0.97300 0.96175 0.95664 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.12 -1.85 6.30 30.59 0.19 -1.66 16 3 C 0.05 0.90 4.74 71.98 0.34 1.24 16 4 O -0.33 -8.02 9.33 -92.49 -0.86 -8.88 16 5 C 0.12 2.83 6.66 22.51 0.15 2.98 16 6 C -0.21 -3.98 9.04 22.37 0.20 -3.77 16 7 C -0.08 -1.40 10.04 22.25 0.22 -1.17 16 8 C -0.16 -2.94 10.04 22.28 0.22 -2.72 16 9 C -0.08 -1.78 7.66 22.25 0.17 -1.61 16 10 C -0.12 -3.16 3.90 -19.77 -0.08 -3.24 16 11 C 0.14 4.25 2.17 44.17 0.10 4.35 16 12 H 0.03 1.04 7.60 -2.39 -0.02 1.02 16 13 C -0.09 -2.59 4.70 30.59 0.14 -2.45 16 14 C -0.08 -2.03 2.55 -10.79 -0.03 -2.06 16 15 C -0.14 -3.44 9.19 71.98 0.66 -2.78 16 16 C -0.14 -4.23 8.29 71.98 0.60 -3.63 16 17 N -0.67 -21.55 2.15 -495.44 -1.07 -22.62 16 18 C 0.09 3.70 5.41 86.30 0.47 4.16 16 19 C 0.00 0.11 4.34 29.85 0.13 0.24 16 20 C -0.53 -31.57 9.66 25.60 0.25 -31.32 16 21 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 22 C 0.00 0.25 5.47 84.66 0.46 0.71 16 23 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 24 Si 0.95 45.23 27.47 68.60 1.88 47.11 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 27 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 34 H 0.07 0.97 7.66 -2.38 -0.02 0.95 16 35 H 0.14 1.99 6.30 -2.91 -0.02 1.97 16 36 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.14 3.18 5.58 -2.91 -0.02 3.16 16 39 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 40 H 0.05 1.52 7.14 -2.39 -0.02 1.50 16 41 H 0.07 1.74 6.20 -2.39 -0.01 1.73 16 42 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.10 2.87 4.15 -2.38 -0.01 2.86 16 47 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.34 10.35 7.17 -89.69 -0.64 9.71 16 49 H 0.05 2.28 7.12 -2.39 -0.02 2.26 16 50 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 52 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 53 H 0.27 15.88 8.31 -92.72 -0.77 15.11 16 Total: -1.00 -68.41 405.18 5.34 -63.08 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.16 Total: 25.66 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 4.92 Total: -43.45 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -0.77 Total: -83.51 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.86 Total: -8.88 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.11 kcal Total: -68.41 5.34 -63.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342346229.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.812 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds