Wall clock time and date at job start Tue Mar 31 2020 12:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.47255 * 2 1 4 4 C 1.46904 * 111.00117 * 65.65912 * 3 2 1 5 5 C 1.50698 * 109.46766 * 66.04766 * 4 3 2 6 6 C 1.38290 * 119.97414 * 269.97490 * 5 4 3 7 7 C 1.38241 * 120.11439 * 180.02562 * 6 5 4 8 8 C 1.38172 * 120.05277 * 359.68038 * 7 6 5 9 9 C 1.38708 * 119.94311 * 0.61885 * 8 7 6 10 10 O 1.35902 * 120.05535 * 179.67436 * 9 8 7 11 11 C 1.42893 * 117.00003 * 359.73056 * 10 9 8 12 12 C 1.53002 * 109.47389 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47281 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00262 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99916 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99680 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99941 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47466 * 89.99784 * 17 15 13 19 19 H 1.48502 * 109.47095 * 209.99898 * 17 15 13 20 20 H 1.48501 * 109.47221 * 329.99926 * 17 15 13 21 21 C 1.38123 * 119.97418 * 90.00302 * 5 4 3 22 22 C 1.46899 * 110.99846 * 301.70600 * 3 2 1 23 23 H 1.09006 * 109.47225 * 65.71366 * 22 3 2 24 24 C 1.52998 * 109.47232 * 185.71290 * 22 3 2 25 25 C 1.52995 * 109.47251 * 305.71180 * 22 3 2 26 26 C 1.53000 * 109.47254 * 179.64862 * 25 22 3 27 27 C 1.53004 * 109.47313 * 299.64890 * 25 22 3 28 28 H 1.08996 * 109.47332 * 182.28470 * 1 2 3 29 29 H 1.09001 * 109.47040 * 302.28140 * 1 2 3 30 30 H 1.09003 * 109.47004 * 62.27808 * 1 2 3 31 31 H 1.08996 * 109.47100 * 240.00217 * 2 1 3 32 32 H 1.08999 * 109.47585 * 119.99586 * 2 1 3 33 33 H 1.09000 * 109.46955 * 306.05159 * 4 3 2 34 34 H 1.08994 * 109.46837 * 186.04812 * 4 3 2 35 35 H 1.08006 * 119.94100 * 0.02562 * 6 5 4 36 36 H 1.08000 * 119.97500 * 179.97438 * 7 6 5 37 37 H 1.07999 * 120.02492 * 180.29782 * 8 7 6 38 38 H 1.09001 * 109.46975 * 299.99512 * 11 10 9 39 39 H 1.09001 * 109.47590 * 59.99608 * 11 10 9 40 40 H 1.09001 * 109.46846 * 299.99814 * 12 11 10 41 41 H 1.09001 * 109.46893 * 59.99403 * 12 11 10 42 42 H 0.96999 * 119.99514 * 179.97438 * 16 15 13 43 43 H 1.08004 * 120.02573 * 359.97300 * 21 5 4 44 44 H 1.08999 * 109.47248 * 180.02562 * 24 22 3 45 45 H 1.09002 * 109.46996 * 299.99870 * 24 22 3 46 46 H 1.08992 * 109.47502 * 60.00026 * 24 22 3 47 47 H 1.09001 * 109.47327 * 59.65116 * 25 22 3 48 48 H 1.08999 * 109.47260 * 59.99845 * 26 25 22 49 49 H 1.09006 * 109.47423 * 180.02562 * 26 25 22 50 50 H 1.09005 * 109.47086 * 300.00284 * 26 25 22 51 51 H 1.08999 * 109.46808 * 299.99914 * 27 25 22 52 52 H 1.08995 * 109.46651 * 60.00038 * 27 25 22 53 53 H 1.08998 * 109.46737 * 179.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6622 2.0698 1.2495 5 6 2.3956 1.4303 2.4003 6 6 1.8206 0.3754 3.0852 7 6 2.4905 -0.2131 4.1416 8 6 3.7397 0.2474 4.5115 9 6 4.3158 1.3093 3.8301 10 8 5.5415 1.7683 4.1962 11 6 6.1774 1.1139 5.2958 12 6 7.5376 1.7633 5.5585 13 6 8.2080 1.0735 6.7186 14 1 7.7132 0.2542 7.2189 15 6 9.4526 1.4891 7.1421 16 7 10.0545 2.4878 6.5338 17 14 10.2838 0.6337 8.5796 18 1 11.1065 -0.4952 8.0755 19 1 11.1552 1.6006 9.2944 20 1 9.2506 0.1155 9.5119 21 6 3.6412 1.8985 2.7704 22 6 1.5156 2.1216 -1.1668 23 1 0.4329 2.2239 -1.0919 24 6 2.1573 3.5098 -1.2097 25 6 1.8685 1.3569 -2.4441 26 6 1.3358 2.1196 -3.6587 27 6 3.3885 1.2209 -2.5536 28 1 -0.3634 -1.0268 0.0410 29 1 -0.3633 0.5489 0.8688 30 1 -0.3633 0.4781 -0.9097 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 0.5877 1.9890 1.4136 34 1 1.9412 3.1212 1.1802 35 1 0.8465 0.0107 2.7943 36 1 2.0393 -1.0365 4.6752 37 1 4.2647 -0.2159 5.3338 38 1 5.5527 1.2064 6.1843 39 1 6.3183 0.0593 5.0590 40 1 8.1622 1.6704 4.6700 41 1 7.3971 2.8179 5.7952 42 1 10.9299 2.7804 6.8320 43 1 4.0898 2.7224 2.2352 44 1 1.7829 4.0565 -2.0752 45 1 1.9059 4.0546 -0.2997 46 1 3.2398 3.4076 -1.2846 47 1 1.4165 0.3656 -2.4107 48 1 1.7878 3.1110 -3.6921 49 1 1.5868 1.5746 -4.5688 50 1 0.2529 2.2166 -3.5807 51 1 3.8405 2.2122 -2.5870 52 1 3.7679 0.6775 -1.6883 53 1 3.6398 0.6757 -3.4634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352817598.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:59 Heat of formation + Delta-G solvation = -44.005192 kcal Electronic energy + Delta-G solvation = -27146.210369 eV Core-core repulsion = 23595.904056 eV Total energy + Delta-G solvation = -3550.306312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24423 -40.28401 -38.45882 -35.86431 -35.42517 -32.83930 -32.51713 -31.63865 -30.57030 -29.09698 -27.98642 -27.17965 -26.63953 -24.56717 -23.86499 -23.29066 -22.53874 -21.20137 -19.28499 -19.02460 -18.09939 -17.41859 -17.00122 -16.92236 -16.77952 -16.60650 -16.31796 -16.22995 -15.17096 -14.97139 -14.46635 -14.35462 -14.31019 -14.26633 -14.13439 -13.89037 -13.63368 -13.33482 -13.21495 -13.07551 -13.00378 -12.78157 -12.69996 -12.57747 -12.52170 -12.37472 -12.29752 -12.10770 -11.86575 -11.81748 -11.59739 -11.56800 -11.49748 -11.35001 -11.30082 -11.08667 -10.62809 -9.77728 -9.15108 -8.98982 -8.27257 -6.41130 0.37900 0.55255 1.40309 1.42838 1.53953 2.27565 2.51824 2.72283 3.06987 3.21587 3.79322 3.89104 3.93210 3.98224 4.11412 4.19477 4.25647 4.26095 4.31060 4.33338 4.41616 4.43205 4.51633 4.54601 4.60413 4.62366 4.66195 4.68949 4.72871 4.84442 4.88830 4.91402 5.07127 5.10194 5.12261 5.12881 5.14369 5.17737 5.28822 5.31235 5.33771 5.42311 5.45778 5.48876 5.54512 5.55704 5.61884 5.64669 5.69000 5.92178 6.07167 6.22592 6.30297 6.59312 6.73609 7.28933 8.85994 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.002286 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.087705 B =12247.758832 C =13070.429123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.041 3.959 3 N -0.534 5.534 4 C 0.093 3.907 5 C -0.035 4.035 6 C -0.152 4.152 7 C -0.078 4.078 8 C -0.224 4.224 9 C 0.106 3.894 10 O -0.343 6.343 11 C 0.086 3.914 12 C 0.028 3.972 13 C -0.546 4.546 14 H 0.071 0.929 15 C 0.000 4.000 16 N -0.931 5.931 17 Si 0.977 3.023 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.259 1.259 21 C -0.152 4.152 22 C 0.088 3.912 23 H 0.049 0.951 24 C -0.153 4.153 25 C -0.087 4.087 26 C -0.145 4.145 27 C -0.139 4.139 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.125 0.875 38 H 0.059 0.941 39 H 0.058 0.942 40 H -0.003 1.003 41 H -0.002 1.002 42 H 0.267 0.733 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.058 0.942 51 H 0.051 0.949 52 H 0.048 0.952 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.508 -4.247 -17.494 30.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.087 4.087 3 N -0.258 5.258 4 C -0.034 4.034 5 C -0.035 4.035 6 C -0.171 4.171 7 C -0.096 4.096 8 C -0.243 4.243 9 C 0.061 3.939 10 O -0.258 6.258 11 C 0.012 3.988 12 C -0.009 4.009 13 C -0.584 4.584 14 H 0.089 0.911 15 C -0.198 4.198 16 N -0.570 5.570 17 Si 0.800 3.200 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.183 1.183 21 C -0.171 4.171 22 C -0.020 4.020 23 H 0.067 0.933 24 C -0.210 4.210 25 C -0.106 4.106 26 C -0.203 4.203 27 C -0.196 4.196 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.143 0.857 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.076 0.924 43 H 0.137 0.863 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.078 0.922 51 H 0.070 0.930 52 H 0.067 0.933 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.721 -3.981 -17.620 29.816 hybrid contribution 0.281 -0.156 0.981 1.033 sum -23.440 -4.138 -16.639 29.041 Atomic orbital electron populations 1.22366 0.97059 1.02911 1.02081 1.22266 0.93750 0.89837 1.02817 1.62196 1.60032 1.02464 1.01093 1.21083 0.97345 0.98162 0.86815 1.19621 0.92720 0.95385 0.95790 1.21157 1.01434 0.97363 0.97111 1.21188 0.92837 0.99186 0.96353 1.21464 0.99277 0.99784 1.03770 1.19516 0.85104 0.94129 0.95142 1.86081 1.29769 1.58972 1.50956 1.22831 0.93939 0.95985 0.86069 1.18963 0.90191 0.95641 0.96080 1.21391 1.03236 1.17991 1.15743 0.91125 1.26067 0.97883 0.95655 1.00202 1.70127 1.15884 1.28207 1.42811 0.85268 0.78361 0.78089 0.78246 1.19510 1.20599 1.18289 1.20358 0.96025 1.03208 0.97498 1.21648 0.96949 0.93716 0.89638 0.93282 1.22031 1.01451 0.95499 1.02008 1.21159 0.96468 0.99156 0.93784 1.21872 1.00975 1.00518 0.96946 1.21751 0.95487 1.01513 1.00869 0.91326 0.92359 0.92142 0.90468 0.91169 0.91983 0.89641 0.83711 0.83296 0.85729 0.92280 0.92388 0.98452 0.98369 0.92422 0.86304 0.90796 0.92794 0.92643 0.90990 0.92204 0.92287 0.92247 0.93020 0.93270 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.19 9.12 71.98 0.66 -1.54 16 2 C 0.04 0.65 5.16 86.30 0.45 1.10 16 3 N -0.53 -9.57 3.82 -875.54 -3.35 -12.92 16 4 C 0.09 1.74 4.80 85.56 0.41 2.15 16 5 C -0.03 -0.84 4.89 -19.88 -0.10 -0.93 16 6 C -0.15 -3.27 7.88 22.28 0.18 -3.09 16 7 C -0.08 -1.87 10.04 22.25 0.22 -1.64 16 8 C -0.22 -7.05 9.04 22.37 0.20 -6.84 16 9 C 0.11 3.90 6.69 22.50 0.15 4.05 16 10 O -0.34 -15.29 10.14 -92.45 -0.94 -16.23 16 11 C 0.09 3.92 4.68 71.98 0.34 4.25 16 12 C 0.03 1.60 5.34 29.85 0.16 1.76 16 13 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 14 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 15 C 0.00 0.03 5.46 84.66 0.46 0.49 16 16 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 17 Si 0.98 43.97 29.54 68.60 2.03 46.00 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 C -0.15 -4.80 9.64 22.37 0.22 -4.58 16 22 C 0.09 1.29 1.29 44.91 0.06 1.35 16 23 H 0.05 0.66 6.66 -2.38 -0.02 0.65 16 24 C -0.15 -2.33 8.33 71.98 0.60 -1.73 16 25 C -0.09 -1.19 2.15 -10.79 -0.02 -1.21 16 26 C -0.15 -1.58 8.85 71.98 0.64 -0.95 16 27 C -0.14 -2.34 8.60 71.98 0.62 -1.72 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.69 6.08 -2.39 -0.01 0.67 16 30 H 0.06 0.68 6.35 -2.39 -0.02 0.66 16 31 H 0.08 1.23 6.11 -2.39 -0.01 1.22 16 32 H 0.07 1.30 5.77 -2.39 -0.01 1.29 16 33 H 0.06 0.97 6.10 -2.39 -0.01 0.95 16 34 H 0.09 1.63 5.84 -2.39 -0.01 1.62 16 35 H 0.15 2.25 7.71 -2.91 -0.02 2.23 16 36 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.12 3.91 6.30 -2.91 -0.02 3.90 16 38 H 0.06 2.53 7.67 -2.39 -0.02 2.51 16 39 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.07 0.91 6.44 -2.39 -0.02 0.90 16 45 H 0.05 0.83 6.24 -2.39 -0.01 0.82 16 46 H 0.05 1.02 6.42 -2.39 -0.02 1.00 16 47 H 0.07 0.96 6.05 -2.39 -0.01 0.95 16 48 H 0.06 0.65 6.44 -2.39 -0.02 0.64 16 49 H 0.06 0.60 8.14 -2.38 -0.02 0.59 16 50 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 51 H 0.05 0.91 6.42 -2.39 -0.02 0.89 16 52 H 0.05 1.02 7.41 -2.39 -0.02 1.00 16 53 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -66.45 397.84 4.37 -62.09 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.88 Total: 18.42 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 5.46 Total: -40.21 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -3.06 Total: -70.07 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.94 Total: -16.23 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.45 4.37 -62.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352817598.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.082 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds