Wall clock time and date at job start Tue Mar 31 2020 13:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47477 * 2 1 4 4 C 1.53003 * 109.47266 * 240.00250 * 2 1 3 5 5 C 1.53000 * 109.47525 * 120.00082 * 2 1 3 6 6 N 1.46894 * 109.47339 * 84.30140 * 5 2 1 7 7 C 1.46907 * 110.99973 * 80.12444 * 6 5 2 8 8 C 1.50707 * 109.46693 * 75.23197 * 7 6 5 9 9 H 1.07999 * 120.00018 * 5.12041 * 8 7 6 10 10 C 1.37875 * 119.99540 * 185.12311 * 8 7 6 11 11 N 1.31512 * 120.00443 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99529 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47385 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46812 * 120.00432 * 12 10 8 15 15 H 1.48502 * 109.47112 * 240.00279 * 12 10 8 16 16 C 1.46898 * 111.00431 * 316.17578 * 6 5 2 17 17 C 1.50706 * 109.47288 * 275.51489 * 16 6 5 18 18 C 1.39865 * 125.89969 * 76.63853 * 17 16 6 19 19 C 1.35319 * 107.91704 * 179.72065 * 18 17 16 20 20 N 1.34940 * 107.74705 * 0.42595 * 19 18 17 21 21 C 1.46502 * 126.03937 * 179.83894 * 20 19 18 22 22 C 1.54273 * 110.02994 * 32.61978 * 21 20 19 23 23 C 1.54964 * 104.16040 * 217.13635 * 22 21 20 24 24 C 1.54889 * 102.77659 * 37.89095 * 23 22 21 25 25 C 1.53875 * 110.03304 * 275.40786 * 21 20 19 26 26 N 1.30837 * 125.89693 * 256.62125 * 17 16 6 27 27 H 1.08992 * 109.47419 * 301.44692 * 1 2 3 28 28 H 1.09001 * 109.46896 * 61.44539 * 1 2 3 29 29 H 1.09004 * 109.47326 * 181.44155 * 1 2 3 30 30 H 1.08997 * 109.47678 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.47159 * 299.99900 * 3 2 1 32 32 H 1.08997 * 109.47182 * 59.99670 * 3 2 1 33 33 H 1.09004 * 109.46693 * 281.29007 * 4 2 1 34 34 H 1.08996 * 109.47506 * 41.28435 * 4 2 1 35 35 H 1.08996 * 109.47225 * 161.29480 * 4 2 1 36 36 H 1.09007 * 109.46891 * 324.30776 * 5 2 1 37 37 H 1.08994 * 109.47502 * 204.31029 * 5 2 1 38 38 H 1.09002 * 109.47305 * 195.23153 * 7 6 5 39 39 H 1.08998 * 109.46737 * 315.23597 * 7 6 5 40 40 H 0.97003 * 119.99834 * 180.02562 * 11 10 8 41 41 H 1.08995 * 109.47845 * 155.51088 * 16 6 5 42 42 H 1.09009 * 109.47138 * 35.50989 * 16 6 5 43 43 H 1.07998 * 126.03905 * 359.97438 * 18 17 16 44 44 H 1.08006 * 126.12214 * 180.26192 * 19 18 17 45 45 H 1.08997 * 110.02165 * 154.01027 * 21 20 19 46 46 H 1.08994 * 110.48443 * 335.78623 * 22 21 20 47 47 H 1.09004 * 110.48373 * 98.42479 * 22 21 20 48 48 H 1.08999 * 110.72111 * 279.57414 * 23 22 21 49 49 H 1.08999 * 110.76362 * 156.22324 * 23 22 21 50 50 H 1.08999 * 110.48398 * 203.40891 * 24 23 22 51 51 H 1.08993 * 110.59905 * 80.81378 * 24 23 22 52 52 H 1.09004 * 110.03043 * 238.56719 * 25 21 20 53 53 H 1.08996 * 110.03024 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 2.0737 -2.1684 0.9997 7 6 3.2720 -2.5435 0.2371 8 6 4.4750 -2.5114 1.1443 9 1 4.3503 -2.3208 2.2000 10 6 5.7348 -2.7254 0.6264 11 7 5.8867 -2.9569 -0.6592 12 14 7.2260 -2.6849 1.7507 13 1 6.7893 -2.4065 3.1424 14 1 7.9177 -3.9981 1.7028 15 1 8.1564 -1.6186 1.3007 16 6 0.8530 -2.6130 0.3140 17 6 -0.2302 -2.8668 1.3305 18 6 -0.9861 -1.8889 1.9851 19 6 -1.8541 -2.5174 2.8113 20 7 -1.6481 -3.8456 2.6911 21 6 -2.3700 -4.8984 3.4099 22 6 -3.8271 -4.4604 3.6649 23 6 -4.1518 -5.0241 5.0714 24 6 -2.8213 -4.8202 5.8377 25 6 -1.7307 -5.1274 4.7907 26 7 -0.6262 -4.0401 1.7529 27 1 -0.3634 0.5361 0.8766 28 1 -0.3633 0.4912 -0.9027 29 1 -0.3634 -1.0274 0.0259 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.9714 -1.7988 -1.1001 34 1 1.4331 -0.4340 -2.1079 35 1 3.0788 -0.4448 -1.4297 36 1 1.3742 -0.5124 2.0866 37 1 3.0441 -0.3701 1.4870 38 1 3.1469 -3.5489 -0.1651 39 1 3.4161 -1.8396 -0.5825 40 1 6.7730 -3.1078 -1.0235 41 1 1.0586 -3.5319 -0.2349 42 1 0.5248 -1.8402 -0.3813 43 1 -0.8959 -0.8210 1.8514 44 1 -2.5798 -2.0412 3.4541 45 1 -2.3536 -5.8229 2.8329 46 1 -3.9046 -3.3732 3.6627 47 1 -4.4918 -4.8927 2.9170 48 1 -4.4059 -6.0825 5.0134 49 1 -4.9573 -4.4574 5.5384 50 1 -2.7528 -5.5149 6.6748 51 1 -2.7345 -3.7918 6.1884 52 1 -1.4048 -6.1634 4.8840 53 1 -0.8831 -4.4556 4.9258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357308486.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:35 Heat of formation + Delta-G solvation = 129.844037 kcal Electronic energy + Delta-G solvation = -28511.919250 eV Core-core repulsion = 25001.444357 eV Total energy + Delta-G solvation = -3510.474893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16734 -39.46863 -37.95874 -33.90085 -32.75251 -31.79447 -29.89071 -29.05969 -28.98280 -27.59319 -26.78743 -26.48107 -25.68563 -23.52713 -21.98504 -20.99788 -20.56368 -19.53311 -19.19220 -18.33454 -17.23378 -16.37508 -15.98459 -15.40606 -14.88509 -14.83119 -14.43548 -14.12800 -14.07129 -13.97238 -13.61460 -13.19348 -13.05026 -12.97349 -12.35214 -12.34439 -11.89502 -11.77467 -11.64306 -11.49749 -11.45324 -11.37495 -11.15497 -11.05350 -11.02001 -10.90825 -10.87598 -10.75318 -10.65677 -10.40755 -10.30962 -10.08217 -9.88938 -9.67944 -9.54065 -9.07416 -8.78782 -8.30765 -8.16457 -6.91020 -5.91796 -3.91098 2.23433 2.72736 3.23775 3.36355 3.43952 3.49806 4.11795 4.24923 4.51768 4.55345 4.91874 4.96284 5.02125 5.10851 5.14526 5.16571 5.26641 5.28474 5.30240 5.33699 5.42829 5.46937 5.54452 5.57129 5.72169 5.74216 5.79695 5.90443 5.94771 5.96476 5.99302 6.03533 6.06091 6.13432 6.20513 6.22355 6.30489 6.39069 6.47446 6.51394 6.57539 6.71188 6.81403 6.93974 6.98346 7.10717 7.36723 7.38148 7.54276 7.94993 8.19897 8.24456 8.35790 8.68758 9.16956 9.71452 11.17742 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.003611 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.094724 B = 7752.201909 C = 9175.127284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.167 4.167 5 C 0.073 3.927 6 N -0.523 5.523 7 C 0.162 3.838 8 C -0.496 4.496 9 H 0.060 0.940 10 C 0.054 3.946 11 N -0.901 5.901 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.083 3.917 17 C 0.104 3.896 18 C -0.270 4.270 19 C 0.040 3.960 20 N -0.373 5.373 21 C 0.161 3.839 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.138 4.138 26 N -0.290 5.290 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.021 0.979 39 H 0.038 0.962 40 H 0.258 0.742 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.076 0.924 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.701 1.921 7.167 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.102 4.102 3 C -0.192 4.192 4 C -0.223 4.223 5 C -0.056 4.056 6 N -0.246 5.246 7 C 0.038 3.962 8 C -0.535 4.535 9 H 0.079 0.921 10 C -0.147 4.147 11 N -0.541 5.541 12 Si 0.721 3.279 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.046 4.046 17 C -0.064 4.064 18 C -0.299 4.299 19 C -0.105 4.105 20 N -0.155 5.155 21 C 0.058 3.942 22 C -0.174 4.174 23 C -0.160 4.160 24 C -0.162 4.162 25 C -0.177 4.177 26 N -0.112 5.112 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.169 0.831 44 H 0.179 0.821 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.095 0.905 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.432 0.247 7.483 21.761 hybrid contribution 0.818 1.259 0.007 1.502 sum -19.615 1.506 7.490 21.050 Atomic orbital electron populations 1.22945 0.95615 1.03541 1.00644 1.21176 0.95060 0.96051 0.97929 1.21823 1.01289 0.95541 1.00515 1.22797 1.01090 1.02707 0.95733 1.22205 1.01445 0.87529 0.94393 1.62035 1.01364 1.12596 1.48635 1.20538 0.85441 0.96412 0.93775 1.21244 0.90440 1.46798 0.95030 0.92145 1.24940 0.98835 0.95895 0.94991 1.69958 1.22692 1.49868 1.11591 0.86526 0.82902 0.77417 0.81083 1.19790 1.21209 1.21248 1.21522 0.89052 1.01729 0.92258 1.22484 0.96364 0.89868 0.97700 1.21791 1.02276 1.01004 1.04866 1.22277 1.01712 0.84800 1.01731 1.48753 1.29175 1.04495 1.33121 1.21843 0.90018 0.89968 0.92373 1.22828 0.94257 1.02209 0.98087 1.22482 0.97645 1.01352 0.94473 1.22368 0.94105 1.01964 0.97737 1.22626 0.99009 1.03051 0.92983 1.77393 1.04134 1.22943 1.06695 0.92871 0.93666 0.88976 0.92381 0.93579 0.93262 0.89443 0.94321 0.91523 0.92484 0.90131 0.96082 0.94456 0.93199 0.90908 0.88262 0.83136 0.82062 0.88192 0.90261 0.90475 0.90966 0.90929 0.91179 0.91376 0.90487 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 6.32 37.15 0.23 -2.12 16 2 C -0.10 -1.62 0.77 -154.51 -0.12 -1.74 16 3 C -0.13 -1.96 8.27 37.16 0.31 -1.66 16 4 C -0.17 -2.98 6.25 37.16 0.23 -2.75 16 5 C 0.07 1.40 4.85 -3.83 -0.02 1.38 16 6 N -0.52 -11.37 4.50 -237.51 -1.07 -12.44 16 7 C 0.16 4.16 3.73 -4.97 -0.02 4.14 16 8 C -0.50 -14.08 8.48 -34.44 -0.29 -14.37 16 9 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 10 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 12 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 16 C 0.08 1.59 3.82 -4.97 -0.02 1.57 16 17 C 0.10 1.87 6.38 -82.40 -0.53 1.35 16 18 C -0.27 -4.10 8.57 -40.01 -0.34 -4.45 16 19 C 0.04 0.53 10.43 -17.23 -0.18 0.35 16 20 N -0.37 -5.43 3.44 -53.77 -0.19 -5.62 16 21 C 0.16 1.76 4.01 -66.81 -0.27 1.49 16 22 C -0.14 -1.06 6.38 -25.03 -0.16 -1.22 16 23 C -0.12 -0.77 6.91 -24.70 -0.17 -0.94 16 24 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 25 C -0.14 -1.41 6.60 -25.61 -0.17 -1.58 16 26 N -0.29 -5.41 12.58 33.67 0.42 -4.99 16 27 H 0.05 0.66 6.80 -51.93 -0.35 0.31 16 28 H 0.04 0.57 8.11 -51.93 -0.42 0.15 16 29 H 0.09 1.34 2.73 -51.93 -0.14 1.20 16 30 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.72 2.92 -51.93 -0.15 1.56 16 34 H 0.04 0.60 7.98 -51.93 -0.41 0.19 16 35 H 0.07 1.33 7.05 -51.93 -0.37 0.97 16 36 H 0.06 1.03 7.03 -51.93 -0.36 0.66 16 37 H 0.08 1.72 7.03 -51.93 -0.37 1.36 16 38 H 0.02 0.59 7.53 -51.93 -0.39 0.20 16 39 H 0.04 0.97 3.94 -51.93 -0.20 0.76 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 41 H 0.07 1.49 7.44 -51.93 -0.39 1.10 16 42 H 0.10 1.70 2.22 -51.92 -0.12 1.59 16 43 H 0.15 2.07 4.64 -52.49 -0.24 1.82 16 44 H 0.16 1.54 6.90 -52.48 -0.36 1.18 16 45 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.08 0.61 5.95 -51.93 -0.31 0.30 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 53 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -31.66 382.43 -9.90 -41.56 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.77 Total: 4.82 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.78 Total: -20.20 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.09 Total: -49.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.66 -9.90 -41.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357308486.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.404 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds