Wall clock time and date at job start Tue Mar 31 2020 13:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47477 * 2 1 4 4 C 1.53003 * 109.47266 * 240.00250 * 2 1 3 5 5 C 1.53000 * 109.47525 * 120.00082 * 2 1 3 6 6 N 1.46894 * 109.47339 * 84.30140 * 5 2 1 7 7 C 1.46907 * 110.99973 * 80.12444 * 6 5 2 8 8 C 1.50707 * 109.46693 * 75.23197 * 7 6 5 9 9 H 1.07999 * 120.00018 * 5.12041 * 8 7 6 10 10 C 1.37875 * 119.99540 * 185.12311 * 8 7 6 11 11 N 1.31512 * 120.00443 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99529 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47385 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46812 * 120.00432 * 12 10 8 15 15 H 1.48502 * 109.47112 * 240.00279 * 12 10 8 16 16 C 1.46898 * 111.00431 * 316.17578 * 6 5 2 17 17 C 1.50706 * 109.47288 * 275.51489 * 16 6 5 18 18 C 1.39865 * 125.89969 * 76.63853 * 17 16 6 19 19 C 1.35319 * 107.91704 * 179.72065 * 18 17 16 20 20 N 1.34940 * 107.74705 * 0.42595 * 19 18 17 21 21 C 1.46502 * 126.03937 * 179.83894 * 20 19 18 22 22 C 1.54273 * 110.02994 * 32.61978 * 21 20 19 23 23 C 1.54964 * 104.16040 * 217.13635 * 22 21 20 24 24 C 1.54889 * 102.77659 * 37.89095 * 23 22 21 25 25 C 1.53875 * 110.03304 * 275.40786 * 21 20 19 26 26 N 1.30837 * 125.89693 * 256.62125 * 17 16 6 27 27 H 1.08992 * 109.47419 * 301.44692 * 1 2 3 28 28 H 1.09001 * 109.46896 * 61.44539 * 1 2 3 29 29 H 1.09004 * 109.47326 * 181.44155 * 1 2 3 30 30 H 1.08997 * 109.47678 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.47159 * 299.99900 * 3 2 1 32 32 H 1.08997 * 109.47182 * 59.99670 * 3 2 1 33 33 H 1.09004 * 109.46693 * 281.29007 * 4 2 1 34 34 H 1.08996 * 109.47506 * 41.28435 * 4 2 1 35 35 H 1.08996 * 109.47225 * 161.29480 * 4 2 1 36 36 H 1.09007 * 109.46891 * 324.30776 * 5 2 1 37 37 H 1.08994 * 109.47502 * 204.31029 * 5 2 1 38 38 H 1.09002 * 109.47305 * 195.23153 * 7 6 5 39 39 H 1.08998 * 109.46737 * 315.23597 * 7 6 5 40 40 H 0.97003 * 119.99834 * 180.02562 * 11 10 8 41 41 H 1.08995 * 109.47845 * 155.51088 * 16 6 5 42 42 H 1.09009 * 109.47138 * 35.50989 * 16 6 5 43 43 H 1.07998 * 126.03905 * 359.97438 * 18 17 16 44 44 H 1.08006 * 126.12214 * 180.26192 * 19 18 17 45 45 H 1.08997 * 110.02165 * 154.01027 * 21 20 19 46 46 H 1.08994 * 110.48443 * 335.78623 * 22 21 20 47 47 H 1.09004 * 110.48373 * 98.42479 * 22 21 20 48 48 H 1.08999 * 110.72111 * 279.57414 * 23 22 21 49 49 H 1.08999 * 110.76362 * 156.22324 * 23 22 21 50 50 H 1.08999 * 110.48398 * 203.40891 * 24 23 22 51 51 H 1.08993 * 110.59905 * 80.81378 * 24 23 22 52 52 H 1.09004 * 110.03043 * 238.56719 * 25 21 20 53 53 H 1.08996 * 110.03024 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 2.0737 -2.1684 0.9997 7 6 3.2720 -2.5435 0.2371 8 6 4.4750 -2.5114 1.1443 9 1 4.3503 -2.3208 2.2000 10 6 5.7348 -2.7254 0.6264 11 7 5.8867 -2.9569 -0.6592 12 14 7.2260 -2.6849 1.7507 13 1 6.7893 -2.4065 3.1424 14 1 7.9177 -3.9981 1.7028 15 1 8.1564 -1.6186 1.3007 16 6 0.8530 -2.6130 0.3140 17 6 -0.2302 -2.8668 1.3305 18 6 -0.9861 -1.8889 1.9851 19 6 -1.8541 -2.5174 2.8113 20 7 -1.6481 -3.8456 2.6911 21 6 -2.3700 -4.8984 3.4099 22 6 -3.8271 -4.4604 3.6649 23 6 -4.1518 -5.0241 5.0714 24 6 -2.8213 -4.8202 5.8377 25 6 -1.7307 -5.1274 4.7907 26 7 -0.6262 -4.0401 1.7529 27 1 -0.3634 0.5361 0.8766 28 1 -0.3633 0.4912 -0.9027 29 1 -0.3634 -1.0274 0.0259 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.9714 -1.7988 -1.1001 34 1 1.4331 -0.4340 -2.1079 35 1 3.0788 -0.4448 -1.4297 36 1 1.3742 -0.5124 2.0866 37 1 3.0441 -0.3701 1.4870 38 1 3.1469 -3.5489 -0.1651 39 1 3.4161 -1.8396 -0.5825 40 1 6.7730 -3.1078 -1.0235 41 1 1.0586 -3.5319 -0.2349 42 1 0.5248 -1.8402 -0.3813 43 1 -0.8959 -0.8210 1.8514 44 1 -2.5798 -2.0412 3.4541 45 1 -2.3536 -5.8229 2.8329 46 1 -3.9046 -3.3732 3.6627 47 1 -4.4918 -4.8927 2.9170 48 1 -4.4059 -6.0825 5.0134 49 1 -4.9573 -4.4574 5.5384 50 1 -2.7528 -5.5149 6.6748 51 1 -2.7345 -3.7918 6.1884 52 1 -1.4048 -6.1634 4.8840 53 1 -0.8831 -4.4556 4.9258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357308486.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:34 Heat of formation + Delta-G solvation = 111.022033 kcal Electronic energy + Delta-G solvation = -28512.735433 eV Core-core repulsion = 25001.444357 eV Total energy + Delta-G solvation = -3511.291076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.37487 -40.88527 -38.77922 -35.59032 -34.47206 -33.22015 -31.04592 -30.34584 -29.72145 -29.20977 -28.27770 -27.77162 -26.95949 -25.32048 -22.95587 -22.47692 -21.53323 -20.52844 -20.48616 -19.68565 -18.48468 -18.17309 -16.86478 -16.80860 -16.78223 -16.00690 -15.68456 -15.64680 -15.35246 -15.09836 -14.63965 -14.50849 -14.34254 -14.22348 -14.02442 -13.34984 -13.19978 -13.05338 -12.95869 -12.80665 -12.67656 -12.53828 -12.45320 -12.29707 -12.28236 -12.16896 -12.10873 -12.02953 -11.84430 -11.78010 -11.61174 -11.49342 -11.38474 -11.31709 -11.05299 -11.00612 -10.51159 -10.06798 -9.32344 -8.64532 -8.12026 -6.21811 1.08404 1.37760 1.38885 1.52059 1.69107 1.96462 2.42390 3.16451 3.37338 3.56293 3.58920 3.86775 3.89348 3.95484 4.01709 4.02288 4.16695 4.25401 4.35737 4.38632 4.43611 4.47825 4.56386 4.65328 4.67328 4.73105 4.78272 4.81792 4.86701 4.92609 4.94685 4.99436 5.00930 5.09258 5.11958 5.15444 5.18924 5.23262 5.24296 5.25479 5.30584 5.37777 5.40541 5.41229 5.51284 5.56143 5.61293 5.74668 5.84323 6.18737 6.35374 6.51597 6.74245 6.94306 6.98442 7.45605 8.95033 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.003611 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.094724 B = 7752.201909 C = 9175.127284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.095 4.095 3 C -0.130 4.130 4 C -0.164 4.164 5 C 0.077 3.923 6 N -0.537 5.537 7 C 0.180 3.820 8 C -0.515 4.515 9 H 0.049 0.951 10 C 0.004 3.996 11 N -0.931 5.931 12 Si 0.960 3.040 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.275 1.275 16 C 0.091 3.909 17 C 0.083 3.917 18 C -0.282 4.282 19 C 0.056 3.944 20 N -0.368 5.368 21 C 0.148 3.852 22 C -0.127 4.127 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.137 4.137 26 N -0.343 5.343 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.050 0.950 38 H -0.019 1.019 39 H 0.035 0.965 40 H 0.262 0.738 41 H 0.041 0.959 42 H 0.123 0.877 43 H 0.168 0.832 44 H 0.207 0.793 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.074 0.926 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.510 3.709 9.038 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.097 4.097 3 C -0.187 4.187 4 C -0.221 4.221 5 C -0.051 4.051 6 N -0.261 5.261 7 C 0.054 3.946 8 C -0.553 4.553 9 H 0.067 0.933 10 C -0.194 4.194 11 N -0.572 5.572 12 Si 0.786 3.214 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.200 1.200 16 C -0.037 4.037 17 C -0.083 4.083 18 C -0.311 4.311 19 C -0.090 4.090 20 N -0.150 5.150 21 C 0.046 3.954 22 C -0.165 4.165 23 C -0.150 4.150 24 C -0.156 4.156 25 C -0.176 4.176 26 N -0.166 5.166 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.068 0.932 38 H -0.001 1.001 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.140 0.860 43 H 0.185 0.815 44 H 0.224 0.776 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.098 0.902 49 H 0.112 0.888 50 H 0.099 0.901 51 H 0.090 0.910 52 H 0.093 0.907 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.256 2.033 9.356 25.150 hybrid contribution 1.640 0.621 -0.552 1.839 sum -21.616 2.654 8.804 23.490 Atomic orbital electron populations 1.22819 0.92901 1.03474 1.02787 1.21105 0.97117 0.96368 0.95069 1.21776 0.99940 0.94528 1.02483 1.22688 0.99902 1.01464 0.97998 1.22170 1.00278 0.86114 0.96553 1.61909 1.01060 1.14695 1.48437 1.20195 0.86706 0.94119 0.93533 1.21510 0.91967 1.47060 0.94792 0.93309 1.25768 1.01782 0.95315 0.96494 1.70072 1.23563 1.50400 1.13208 0.85472 0.79139 0.77720 0.79107 1.19410 1.20708 1.20028 1.21462 0.88440 1.00835 0.92971 1.22334 0.96727 0.90958 0.98255 1.21967 1.02476 1.01426 1.05221 1.22929 1.01260 0.84017 1.00781 1.49020 1.28035 1.06000 1.31976 1.22241 0.91946 0.89177 0.92013 1.22836 0.91496 1.02819 0.99376 1.22476 0.97316 1.02166 0.93031 1.22354 0.93556 1.02472 0.97174 1.22598 0.99035 1.02191 0.93762 1.77288 1.06410 1.24022 1.08881 0.90624 0.91623 0.89987 0.94580 0.91619 0.91226 0.91835 0.91671 0.94516 0.90868 0.93161 1.00058 0.94807 0.92898 0.94071 0.86027 0.81455 0.77611 0.89239 0.89388 0.89650 0.90223 0.88817 0.90132 0.90986 0.90693 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 6.32 71.98 0.46 -3.58 16 2 C -0.09 -2.99 0.77 -52.18 -0.04 -3.03 16 3 C -0.13 -3.59 8.27 71.98 0.59 -2.99 16 4 C -0.16 -6.01 6.25 71.98 0.45 -5.56 16 5 C 0.08 3.00 4.85 86.30 0.42 3.42 16 6 N -0.54 -24.64 4.50 -905.34 -4.07 -28.72 16 7 C 0.18 9.88 3.73 85.56 0.32 10.20 16 8 C -0.51 -30.71 8.48 25.60 0.22 -30.49 16 9 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 10 C 0.00 0.23 5.46 84.65 0.46 0.70 16 11 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 12 Si 0.96 46.44 29.54 68.60 2.03 48.46 16 13 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 14 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 15 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 16 C 0.09 3.67 3.82 85.56 0.33 4.00 16 17 C 0.08 3.07 6.38 43.10 0.27 3.35 16 18 C -0.28 -8.09 8.57 21.99 0.19 -7.91 16 19 C 0.06 1.35 10.43 83.54 0.87 2.22 16 20 N -0.37 -10.47 3.44 -324.04 -1.12 -11.58 16 21 C 0.15 3.10 4.01 45.72 0.18 3.28 16 22 C -0.13 -1.59 6.38 31.70 0.20 -1.39 16 23 C -0.11 -1.00 6.91 31.91 0.22 -0.78 16 24 C -0.12 -1.46 6.83 31.67 0.22 -1.24 16 25 C -0.14 -2.72 6.60 31.32 0.21 -2.51 16 26 N -0.34 -13.24 12.58 -47.38 -0.60 -13.83 16 27 H 0.08 1.56 6.80 -2.39 -0.02 1.55 16 28 H 0.06 1.39 8.11 -2.39 -0.02 1.37 16 29 H 0.08 2.24 2.73 -2.39 -0.01 2.24 16 30 H 0.03 1.14 8.11 -2.39 -0.02 1.12 16 31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 2.64 2.92 -2.39 -0.01 2.64 16 34 H 0.06 2.00 7.98 -2.39 -0.02 1.98 16 35 H 0.04 1.54 7.05 -2.39 -0.02 1.52 16 36 H 0.07 2.59 7.03 -2.38 -0.02 2.57 16 37 H 0.05 2.23 7.03 -2.39 -0.02 2.22 16 38 H -0.02 -1.15 7.53 -2.39 -0.02 -1.17 16 39 H 0.03 1.89 3.94 -2.39 -0.01 1.88 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.04 1.85 7.44 -2.39 -0.02 1.83 16 42 H 0.12 4.26 2.22 -2.38 -0.01 4.26 16 43 H 0.17 4.07 4.64 -2.91 -0.01 4.06 16 44 H 0.21 2.96 6.90 -2.91 -0.02 2.94 16 45 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.09 0.97 5.95 -2.39 -0.01 0.96 16 47 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.05 1.21 7.92 -2.39 -0.02 1.19 16 Total: -1.00 -73.87 382.43 2.99 -70.89 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.90 Total: 24.13 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 5.57 Total: -32.33 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -5.50 Total: -111.15 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -73.87 2.99 -70.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357308486.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.907 kcal (2) G-P(sol) polarization free energy of solvation -73.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds