Wall clock time and date at job start Tue Mar 31 2020 13:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40081 * 126.03714 * 2 1 4 4 C 1.30840 * 108.20480 * 180.23245 * 3 2 1 5 5 C 1.39875 * 108.20240 * 359.78166 * 4 3 2 6 6 C 1.34944 * 126.03325 * 179.84672 * 2 1 3 7 7 C 1.50701 * 126.13198 * 0.03644 * 6 2 1 8 8 H 1.09003 * 109.46562 * 334.70949 * 7 6 2 9 9 C 1.52999 * 109.47378 * 94.71159 * 7 6 2 10 10 C 1.52999 * 109.47168 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47140 * 300.00003 * 10 9 7 12 12 C 1.52999 * 109.47093 * 59.99951 * 11 10 9 13 13 H 1.09003 * 109.47445 * 60.00170 * 12 11 10 14 14 N 1.46904 * 109.47409 * 180.02562 * 12 11 10 15 15 C 1.46896 * 111.00095 * 275.00412 * 14 12 11 16 16 C 1.52997 * 109.47114 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47143 * 59.99844 * 16 15 14 18 18 C 1.52997 * 109.47232 * 299.99800 * 16 15 14 19 19 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 20 20 C 1.50698 * 109.47184 * 179.97438 * 19 16 15 21 21 H 1.08005 * 119.99819 * 0.02562 * 20 19 16 22 22 C 1.37875 * 120.00046 * 179.97438 * 20 19 16 23 23 N 1.31511 * 120.00192 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99979 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47261 * 60.00310 * 24 22 20 27 27 H 1.48500 * 109.47454 * 300.00304 * 24 22 20 28 28 C 1.53003 * 109.47515 * 299.99966 * 12 11 10 29 29 H 1.08997 * 109.47320 * 270.15776 * 1 2 3 30 30 H 1.09003 * 109.46772 * 30.15111 * 1 2 3 31 31 H 1.08999 * 109.47373 * 150.14986 * 1 2 3 32 32 H 1.07995 * 125.90339 * 179.81378 * 4 3 2 33 33 H 1.07996 * 126.04489 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.46983 * 60.00028 * 9 7 6 35 35 H 1.09000 * 109.47026 * 300.00265 * 9 7 6 36 36 H 1.08996 * 109.47101 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.47270 * 60.00115 * 10 9 7 38 38 H 1.09001 * 109.47130 * 300.00197 * 11 10 9 39 39 H 1.08999 * 109.47287 * 180.02562 * 11 10 9 40 40 H 1.00892 * 111.00303 * 151.04383 * 14 12 11 41 41 H 1.09001 * 109.47271 * 59.99820 * 15 14 12 42 42 H 1.09004 * 109.47041 * 299.99667 * 15 14 12 43 43 H 1.09004 * 109.47059 * 179.97438 * 17 16 15 44 44 H 1.08992 * 109.47060 * 300.00021 * 17 16 15 45 45 H 1.09004 * 109.46930 * 59.99935 * 17 16 15 46 46 H 1.09001 * 109.47375 * 299.99867 * 18 16 15 47 47 H 1.09002 * 109.47045 * 59.99942 * 18 16 15 48 48 H 1.09000 * 109.47140 * 179.97438 * 18 16 15 49 49 H 1.08998 * 109.46509 * 60.00429 * 19 16 15 50 50 H 1.08993 * 109.46955 * 299.99989 * 19 16 15 51 51 H 0.97001 * 119.99934 * 359.97438 * 23 22 20 52 52 H 1.08996 * 109.47448 * 179.97438 * 28 12 11 53 53 H 1.09003 * 109.46930 * 300.00519 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7321 -0.0050 5 6 3.5437 -0.6666 -0.0033 6 6 2.2588 -1.0913 0.0029 7 6 1.7973 -2.5258 0.0060 8 1 0.8012 -2.5860 0.4447 9 6 1.7546 -3.0510 -1.4304 10 6 1.2854 -4.5072 -1.4273 11 6 2.2571 -5.3544 -0.6033 12 6 2.2997 -4.8292 0.8331 13 1 1.3036 -4.8891 1.2717 14 7 3.2332 -5.6422 1.6243 15 6 2.5703 -6.8431 2.1498 16 6 3.5720 -7.6627 2.9658 17 6 4.0943 -6.8179 4.1295 18 6 4.7417 -8.0764 2.0705 19 6 2.8814 -8.9133 3.5137 20 6 3.8681 -9.7209 4.3168 21 1 4.8860 -9.3765 4.4259 22 6 3.4713 -10.8990 4.9133 23 7 2.2319 -11.3182 4.7809 24 14 4.6943 -11.8997 5.9094 25 1 4.0241 -13.1136 6.4411 26 1 5.2021 -11.0794 7.0383 27 1 5.8292 -12.3021 5.0402 28 6 2.7690 -3.3729 0.8301 29 1 -0.3634 0.0028 1.0276 30 1 -0.3633 0.8887 -0.5162 31 1 -0.3634 -0.8913 -0.5115 32 1 4.4054 1.3709 -0.0092 33 1 4.4210 -1.2965 -0.0061 34 1 2.7506 -2.9907 -1.8690 35 1 1.0620 -2.4477 -2.0174 36 1 1.2554 -4.8815 -2.4506 37 1 0.2892 -4.5671 -0.9889 38 1 3.2532 -5.2945 -1.0417 39 1 1.9231 -6.3919 -0.6014 40 1 3.6429 -5.0997 2.3698 41 1 2.1985 -7.4452 1.3207 42 1 1.7367 -6.5484 2.7873 43 1 4.8076 -7.4020 4.7111 44 1 4.5862 -5.9269 3.7395 45 1 3.2609 -6.5232 4.7673 46 1 4.3696 -8.6783 1.2415 47 1 5.2336 -7.1853 1.6805 48 1 5.4555 -8.6600 2.6519 49 1 2.5090 -9.5153 2.6848 50 1 2.0483 -8.6182 4.1516 51 1 1.5967 -10.7983 4.2639 52 1 2.7989 -2.9987 1.8534 53 1 3.7651 -3.3131 0.3916 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367896607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:36 Heat of formation + Delta-G solvation = 38.353252 kcal Electronic energy + Delta-G solvation = -27485.772351 eV Core-core repulsion = 23971.330120 eV Total energy + Delta-G solvation = -3514.442231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61012 -39.11646 -37.26669 -34.28845 -33.47782 -32.42981 -32.08955 -29.22224 -28.49206 -27.01848 -26.52201 -26.36098 -25.05662 -23.42902 -22.63782 -21.83060 -21.39110 -20.00673 -19.46321 -18.13232 -17.13418 -16.39002 -15.80986 -15.62168 -15.26515 -14.93599 -14.62514 -14.48160 -14.15290 -13.96114 -13.69043 -13.53894 -13.45915 -13.04586 -12.81112 -12.74243 -12.61552 -12.47503 -12.26216 -12.11596 -11.61961 -11.44257 -11.30414 -11.12965 -11.00690 -10.96784 -10.86429 -10.73527 -10.59041 -10.52975 -10.35086 -10.09635 -9.95316 -9.77737 -9.48739 -9.25534 -8.73637 -8.38536 -8.27033 -8.14812 -6.28657 -3.96254 1.61718 2.24506 2.62290 3.46342 3.48098 3.66388 4.04441 4.18252 4.28293 4.49531 4.58676 4.64596 4.78641 4.87104 4.91457 4.94341 5.03731 5.12133 5.14673 5.23587 5.27822 5.40983 5.44070 5.46422 5.55677 5.60943 5.67827 5.71375 5.74288 5.85074 5.88921 5.91594 6.02068 6.04957 6.12195 6.20781 6.26769 6.32342 6.42848 6.45087 6.59285 6.71510 6.74831 6.77377 7.12338 7.14647 7.20863 7.34552 7.43457 7.47314 7.57830 7.67043 8.30963 8.53872 8.96056 9.74247 11.11228 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.025072 B = 0.002292 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.507063 B =12214.190622 C =12570.512182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.374 5.374 3 N -0.304 5.304 4 C 0.046 3.954 5 C -0.270 4.270 6 C 0.096 3.904 7 C -0.021 4.021 8 H 0.079 0.921 9 C -0.106 4.106 10 C -0.118 4.118 11 C -0.108 4.108 12 C 0.088 3.912 13 H 0.039 0.961 14 N -0.681 5.681 15 C 0.071 3.929 16 C -0.051 4.051 17 C -0.128 4.128 18 C -0.115 4.115 19 C 0.020 3.980 20 C -0.586 4.586 21 H 0.053 0.947 22 C 0.011 3.989 23 N -0.917 5.917 24 Si 1.065 2.935 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.289 1.289 28 C -0.106 4.106 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.182 0.818 33 H 0.148 0.852 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.339 0.661 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.044 0.956 48 H 0.055 0.945 49 H 0.005 0.995 50 H 0.002 0.998 51 H 0.267 0.733 52 H 0.063 0.937 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 21.736 -12.763 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.157 5.157 3 N -0.125 5.125 4 C -0.139 4.139 5 C -0.299 4.299 6 C -0.031 4.031 7 C -0.042 4.042 8 H 0.097 0.903 9 C -0.144 4.144 10 C -0.156 4.156 11 C -0.146 4.146 12 C -0.022 4.022 13 H 0.057 0.943 14 N -0.313 5.313 15 C -0.058 4.058 16 C -0.051 4.051 17 C -0.186 4.186 18 C -0.172 4.172 19 C -0.017 4.017 20 C -0.625 4.625 21 H 0.071 0.929 22 C -0.192 4.192 23 N -0.554 5.554 24 Si 0.894 3.106 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.215 1.215 28 C -0.145 4.145 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.199 0.801 33 H 0.165 0.835 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.159 0.841 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.023 0.977 50 H 0.020 0.980 51 H 0.077 0.923 52 H 0.082 0.918 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.614 21.059 -12.396 24.576 hybrid contribution -0.318 1.152 -0.130 1.202 sum -2.932 22.212 -12.525 25.668 Atomic orbital electron populations 1.21842 0.74685 1.04385 1.03404 1.48481 1.06408 1.03461 1.57335 1.77353 1.01935 1.07906 1.25297 1.23839 0.95166 0.95208 0.99736 1.21261 0.96442 0.94857 1.17322 1.21094 0.91325 0.90041 1.00676 1.19801 0.99864 0.86926 0.97591 0.90318 1.21562 1.02328 0.96192 0.94355 1.21549 0.99274 0.94333 1.00487 1.21537 0.99839 0.99074 0.94137 1.21473 0.94539 0.91303 0.94842 0.94307 1.60568 1.33779 1.08586 1.28410 1.22145 0.95374 0.90967 0.97310 1.20476 0.95060 0.95731 0.93869 1.21760 1.00628 0.98114 0.98056 1.21582 0.97804 0.99499 0.98297 1.19249 0.95686 0.91577 0.95203 1.22017 0.97682 1.08512 1.34265 0.92929 1.25782 0.99288 0.96536 0.97585 1.70778 1.03930 1.40969 1.39757 0.83595 0.74745 0.76199 0.76070 1.20955 1.21580 1.21517 1.21704 0.99405 0.93643 0.99704 0.90786 0.89296 0.89531 0.80110 0.83464 0.91005 0.92324 0.91491 0.92131 0.91095 0.91767 0.84109 0.91692 0.96140 0.91602 0.94636 0.94306 0.94343 0.93709 0.92631 0.97691 0.97967 0.92254 0.91794 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.06 59.85 0.66 1.29 16 2 N -0.37 -3.77 4.01 -63.88 -0.26 -4.03 16 3 N -0.30 -3.55 12.58 30.63 0.39 -3.17 16 4 C 0.05 0.46 12.03 -17.36 -0.21 0.25 16 5 C -0.27 -2.65 9.98 -40.01 -0.40 -3.05 16 6 C 0.10 0.93 5.86 -82.26 -0.48 0.45 16 7 C -0.02 -0.17 2.20 -91.77 -0.20 -0.38 16 8 H 0.08 0.62 7.51 -51.93 -0.39 0.23 16 9 C -0.11 -0.82 5.19 -26.73 -0.14 -0.96 16 10 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 11 C -0.11 -1.13 5.42 -26.73 -0.15 -1.27 16 12 C 0.09 0.98 2.49 -67.71 -0.17 0.81 16 13 H 0.04 0.46 7.80 -51.93 -0.41 0.05 16 14 N -0.68 -9.24 5.52 -106.72 -0.59 -9.83 16 15 C 0.07 1.18 4.45 -3.83 -0.02 1.16 16 16 C -0.05 -1.00 0.60 -154.51 -0.09 -1.10 16 17 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 18 C -0.11 -2.21 8.06 37.16 0.30 -1.91 16 19 C 0.02 0.51 3.35 -27.88 -0.09 0.41 16 20 C -0.59 -16.15 7.65 -34.44 -0.26 -16.41 16 21 H 0.05 1.42 5.68 -52.48 -0.30 1.13 16 22 C 0.01 0.32 5.46 -17.82 -0.10 0.22 16 23 N -0.92 -28.12 13.65 55.43 0.76 -27.36 16 24 Si 1.07 25.34 29.90 -169.99 -5.08 20.26 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 28 C -0.11 -0.99 4.06 -26.73 -0.11 -1.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.40 7.55 -51.93 -0.39 0.01 16 32 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.15 1.26 7.37 -52.49 -0.39 0.87 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.76 7.46 -51.93 -0.39 0.38 16 40 H 0.34 4.49 6.39 -39.30 -0.25 4.24 16 41 H 0.06 1.13 7.44 -51.93 -0.39 0.74 16 42 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 43 H 0.06 1.35 6.62 -51.93 -0.34 1.00 16 44 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 48 H 0.05 1.16 6.62 -51.93 -0.34 0.82 16 49 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 50 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 51 H 0.27 8.17 7.22 -40.82 -0.29 7.87 16 52 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 53 H 0.08 0.76 7.28 -51.93 -0.38 0.39 16 LS Contribution 401.27 15.07 6.05 6.05 Total: -1.00 -31.90 401.27 -9.75 -41.64 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -9.69 Total: 1.22 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -1.32 Total: -24.79 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.30 Total: -44.38 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.90 -9.75 -41.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367896607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.998 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds